Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19c01
         (643 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    25   0.47 
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    25   0.62 
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    25   0.62 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    25   0.62 
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    24   1.1  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    24   1.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   1.9  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   3.3  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   5.8  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
 Frame = +3

Query: 270 MDLVSLETSDEN--EWVKARIVQDKIKYIWTSGRLCDF-KGCNRP-----DLLPNEINGW 425
           + +V L+T+ E   EW K     +     W      +F KG N       D+  N +N W
Sbjct: 13  VSVVLLDTTQEEKLEWTKYPFGAEANTPGWVEESFTNFDKGINWRSYVVCDVAYNNVNNW 72

Query: 426 FWTAELQK 449
            WT  +++
Sbjct: 73  LWTPFIER 80


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 260 SAVVSCAQPVFFDAAERWVPP 198
           S  + C   +F +AA  WVPP
Sbjct: 12  SLALLCLHAIFVNAAPDWVPP 32


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 260 SAVVSCAQPVFFDAAERWVPP 198
           S  + C   +F +AA  WVPP
Sbjct: 12  SLALLCLHAIFVNAAPDWVPP 32


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
 Frame = +3

Query: 213 LRGVEEDWLSARNYCRQRCMDLVSLETSDENEWVKARIVQ------DKIK--YIWTSGRL 368
           ++ +E+    A+    +  +DLV   TSD+++W +  I        +K K  YIW    +
Sbjct: 97  IKDLEDLTAEAKKQNLKVILDLVPNHTSDQHKWFQMSINNTNNNNTNKYKDYYIWVD-PV 155

Query: 369 CDFKGCNRPDLLPNE----INGWFWT 434
            D KG    D  PN      NG  WT
Sbjct: 156 KDDKGNPIKDKYPNNWLSVFNGTGWT 181


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +3

Query: 270 MDLVSLETSDENEWVK---ARIVQDKIKYIWTSGRLCDFK 380
           +D V   TSD++EW +     I      YIW  G++ + K
Sbjct: 118 LDFVPNHTSDQHEWFQLSLKNIEPYNNYYIWHPGKIVNGK 157


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +3

Query: 270 MDLVSLETSDENEWVK---ARIVQDKIKYIWTSGRLCDFK 380
           +D V   TSD++EW +     I      YIW  G++ + K
Sbjct: 118 LDFVPNHTSDQHEWFQLSLKNIEPYNNYYIWHPGKIVNGK 157


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 19/78 (24%), Positives = 34/78 (43%)
 Frame = +1

Query: 292 PAMKMNGSKRVLSRTR*STFGHRAVFVTSKDATDLTYYLTK*TVGSGLLSCRSWLPPPTV 471
           P  ++ G ++  S    ST  +  +    +    + YYL +  + SGL+   SW+    +
Sbjct: 186 PQFRVLGHRQRHSTIHLSTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWV-SFWL 244

Query: 472 NRTTGPKVAALENRNLIT 525
           NR   P   AL    ++T
Sbjct: 245 NRNATPARVALGVTTVLT 262


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +3

Query: 408 NEINGWFWTAELQKLA 455
           NE+N W+W  ++  L+
Sbjct: 361 NEMNKWWWNMKISNLS 376


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +1

Query: 82  WWPRHSSPMD 111
           W+PRH+S +D
Sbjct: 173 WFPRHASDLD 182


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,823
Number of Sequences: 438
Number of extensions: 4858
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)