Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19b24
(681 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44) 133 1e-31
SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.) 126 2e-29
SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0) 122 3e-28
SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.) 119 2e-27
SB_34218| Best HMM Match : No HMM Matches (HMM E-Value=.) 83 2e-16
SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0) 33 0.16
SB_42896| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_47927| Best HMM Match : TSP_1 (HMM E-Value=9.5e-34) 28 6.1
SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_12646| Best HMM Match : SSrecog (HMM E-Value=0) 28 6.1
SB_12316| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44)
Length = 251
Score = 133 bits (322), Expect = 1e-31
Identities = 68/108 (62%), Positives = 83/108 (76%), Gaps = 3/108 (2%)
Frame = +1
Query: 355 DKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRV 534
DKEE V AKLAEQAERYDDM +MKEV + G ELS E+RNLLSVAYKNV+GARR+SWR+
Sbjct: 3 DKEEHVYMAKLAEQAERYDDMVNSMKEVAKMGTELSTEDRNLLSVAYKNVIGARRASWRI 62
Query: 535 ISSIEQKTE--GSE-RKQQMAKEYRVKVEKELREICYDVLGLLDKHLI 669
I+SIEQK E G + K +M + YR +E+EL+ IC ++L LLD LI
Sbjct: 63 ITSIEQKEESKGEDMAKLEMIRNYRKTIEEELKTICGEILSLLDDSLI 110
>SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 126 bits (304), Expect = 2e-29
Identities = 64/111 (57%), Positives = 85/111 (76%)
Frame = +1
Query: 346 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSS 525
M V +E L+ AKL+EQ +RYD+MA MKEV+E +LS EERNLLSV+YKN+VG RRSS
Sbjct: 80 MMVVRETLIYNAKLSEQCDRYDEMAKIMKEVSEKYPKLSKEERNLLSVSYKNIVGQRRSS 139
Query: 526 WRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKA 678
WRVISSIE+KT S + K+Y+ +EKEL+++C +VLG+L++ LIP A
Sbjct: 140 WRVISSIEEKTAESS-SLAIVKKYKACIEKELKDLCKEVLGILER-LIPGA 188
>SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)
Length = 248
Score = 122 bits (294), Expect = 3e-28
Identities = 62/112 (55%), Positives = 78/112 (69%)
Frame = +1
Query: 334 PSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGA 513
P+ +EEL+ AK+AEQAERYDDM AM VT+ G L++EERNLLSVAYKNVVGA
Sbjct: 3 PNFVSKCSREELIHLAKMAEQAERYDDMVNAMSAVTKEGKPLNDEERNLLSVAYKNVVGA 62
Query: 514 RRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLI 669
RRSSWRVISS+EQK E + K+YR + EL C +VL +L+ +L+
Sbjct: 63 RRSSWRVISSMEQK--APEEMAALTKKYREDITNELNGKCAEVLDILENYLL 112
>SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 309
Score = 119 bits (287), Expect = 2e-27
Identities = 60/88 (68%), Positives = 66/88 (75%)
Frame = +1
Query: 415 MAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKE 594
MA AMKE TE L EERNLLSVAYKNVVGA+RSSWRVISSIEQK EGSERK+Q +
Sbjct: 1 MAKAMKEATEISETLEQEERNLLSVAYKNVVGAKRSSWRVISSIEQKLEGSERKKQNTET 60
Query: 595 YRVKVEKELREICYDVLGLLDKHLIPKA 678
YR +E EL E+C VL LL+ LIP A
Sbjct: 61 YRQTIENELNEVCETVLKLLESKLIPNA 88
>SB_34218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 607
Score = 83.0 bits (196), Expect = 2e-16
Identities = 43/102 (42%), Positives = 63/102 (61%), Gaps = 2/102 (1%)
Frame = +1
Query: 346 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSS 525
M + ELVQ AKLAEQ ER++D+ MK+ E L+ E RNLLSV YKNVVG++R +
Sbjct: 186 MQDSRNELVQLAKLAEQTERFEDVILYMKKAIEINPSLNKEHRNLLSVGYKNVVGSKRFA 245
Query: 526 WRVISSIEQKTEGSERKQQMAK--EYRVKVEKELREICYDVL 645
WR + ++ R Q+ +Y+ K+E EL+ +C ++L
Sbjct: 246 WRHLHHDALQSGRYIRDSQLKGIIKYKEKIEMELKTLCREIL 287
>SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)
Length = 442
Score = 33.5 bits (73), Expect = 0.16
Identities = 23/86 (26%), Positives = 40/86 (46%)
Frame = +1
Query: 358 KEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRVI 537
KE+ AK ++ ER + A K+ E + EE++ L K R+ +
Sbjct: 339 KEKERLEAKQKKEQERLEKQAEKEKKEKERLEKKQREEKDRLEKKEKKEEEKRKKEEEIN 398
Query: 538 SSIEQKTEGSERKQQMAKEYRVKVEK 615
+ IE+K + E+K+Q +E K E+
Sbjct: 399 AKIEEKKKREEKKKQEEEEKMKKKEQ 424
>SB_42896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 994
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +1
Query: 322 ISPLPSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEER 474
+SPLPS+ +E+V KLAE+ E ++++ T+ E + EE+
Sbjct: 643 VSPLPSTATEDQMQEVVDSNKLAEKKEVTEEVSPVKPLSTKESKENALEEK 693
>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3367
Score = 29.9 bits (64), Expect = 2.0
Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
Frame = +1
Query: 343 TMSVDKEELVQRAKLAEQAERY---DDMAAAMKEVTETGVELSNE-ERNLLSVAYKNVVG 510
++S+ +EL + LA Q + D A K+VT ++ + E R + +
Sbjct: 3123 SLSLKSQELEAKNALANQKLKQMVKDQQEAEKKKVTSMEIQTTIETHRKQTIIEMVSCAA 3182
Query: 511 ARRSSWR--------VISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHL 666
R S++ + SS++++T+ + KQQ + +VE + E V G+ +HL
Sbjct: 3183 CLRKSYQESAFLDLLITSSLQKQTKQIKEKQQAVMKDLAQVEPAVDEARQAVKGIKKQHL 3242
Query: 667 I 669
+
Sbjct: 3243 V 3243
>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/100 (22%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Frame = +1
Query: 334 PSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLL-SVAYKNVVG 510
PSS S DK+E+ +++ +++++ ++A K + E ++S + S+ K +
Sbjct: 1066 PSSRSSHDKDEISEKSNPSDKSD--VEVARKNKHMPEALYKISETISGMNDSITLKEPLK 1123
Query: 511 ARRSSWR--VISSIEQKTEGSERKQQMAKEYRVKVEKELR 624
A+ R ++ + E +R+ + K++R++ EK+ R
Sbjct: 1124 AKDGDGRNKEEQELKDRMENEKREDTIRKQHRLQWEKKAR 1163
>SB_47927| Best HMM Match : TSP_1 (HMM E-Value=9.5e-34)
Length = 512
Score = 28.3 bits (60), Expect = 6.1
Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +1
Query: 376 RAKLAEQAERYDDMAAAM-KEVTETGVELSNEERNLLSVAYKNVVGARRSSWRVISSIEQ 552
+ K+ +++E+YD + + KE T+ G + E + N AR + ++ +
Sbjct: 13 KRKIFKKSEKYDRLEEPLEKEGTDGGEIEAEAEVEPHTEEEANYNEARSENCEKNNNNDS 72
Query: 553 KTEGSERKQQMAKEYRVKVEKELRE 627
T ++ +Q KE+ V +EK+L++
Sbjct: 73 STPDAKSQQADIKEWIVSLEKQLKD 97
>SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1126
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 529 RVISSIEQKTEGSERKQQMAKEYRVKVEKELREIC 633
R++ IE+K E E ++ AKE + + E+E + IC
Sbjct: 919 RIMKEIEEK-EKKEEAERKAKEEKEREERERKRIC 952
>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
Length = 783
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +1
Query: 574 KQQMAKEYRVKVEKELREICYDVLGLLDKHLIPK 675
K++M ++Y K+EKE+ Y+++ L K ++ K
Sbjct: 292 KEEMKEKYDGKIEKEMSGAIYEIISRLMKAVVGK 325
>SB_12316| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 676
Score = 27.9 bits (59), Expect = 8.0
Identities = 26/99 (26%), Positives = 47/99 (47%)
Frame = +1
Query: 331 LPSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVG 510
L S+ +D+E R +++++ RY + A MK V E + ++E + +
Sbjct: 539 LDSNLSKLDQEVRGLREEISQEESRYHYLHAMMK-VLEIQQKRIDDEMKAYTAQDQ---A 594
Query: 511 ARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELRE 627
R+ SWR EQ T + ++ + K R K +K +RE
Sbjct: 595 DRKKSWR-----EQYTRKIQEQENLGKSLREK-QKAVRE 627
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,228,074
Number of Sequences: 59808
Number of extensions: 400088
Number of successful extensions: 1122
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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