Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19b24
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   1.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.2  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    21   8.2  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    21   8.2  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   8.2  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -1

Query: 513 GTYDILISN*KEVPLLVAKFDAGFRHFLHRGRHV 412
           G +D+ + + + V  L     A F    HRG H+
Sbjct: 183 GAFDVTLESGERVTFLDTPGHAAFISMRHRGAHI 216


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 240  SR*ETVSPVRAKWLLQGHSYASQSI 166
            S+ + VSP + K LL GH    Q+I
Sbjct: 1023 SQIKLVSPGQIKSLLTGHGLQGQTI 1047


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 339 RWKRTNSLMPDLLKPAVL 286
           +W+R N  +PD L+  VL
Sbjct: 551 KWERANRELPDDLRQKVL 568


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 339 RWKRTNSLMPDLLKPAVL 286
           +W+R N  +PD L+  VL
Sbjct: 551 KWERANRELPDDLRQKVL 568


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 264 NKKSVCTPRQR 296
           NKK VC PR +
Sbjct: 80  NKKKVCVPRSK 90


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 264 NKKSVCTPRQR 296
           NKK VC PR +
Sbjct: 80  NKKKVCVPRSK 90


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 220 AGTCKMAAARALLCVTVNFKKCKY 149
           A +  +AAA A+   T   K C+Y
Sbjct: 127 ASSAALAAAAAVDAATAGDKSCRY 150


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,923
Number of Sequences: 438
Number of extensions: 3787
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)