Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19b23
(695 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.068
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 27 1.9
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po... 27 1.9
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 27 3.4
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.4
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 3.4
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 26 4.5
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 5.9
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 26 5.9
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 26 5.9
SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces pom... 26 5.9
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.8
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 25 7.8
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 25 7.8
SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.8
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.3 bits (70), Expect = 0.068
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +1
Query: 118 PTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANPLER 237
P PV+N SP +PPK + P +S P T A PL R
Sbjct: 972 PLPVSNILSSPTSEPPKDH-PPSAPLSKPVSTSPAAPLAR 1010
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +1
Query: 115 LPT---PVANSPLSPVRQPPKSNIKPPTRISLPT 207
LPT P N+P PV P +I+PP ++LPT
Sbjct: 334 LPTSNLPSQNAPARPVE--PSPSIQPPNLLNLPT 365
>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 380
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 64 NNIFDAPKTGGKGRVKSLPTPVANSPLSPVRQPPKSNIK 180
N + A KT +GR+ S PV +SP PV K + K
Sbjct: 327 NRLEKASKTIPQGRLDSFFKPVPSSPKKPVDTKSKGSAK 365
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 26.6 bits (56), Expect = 3.4
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +1
Query: 70 IFDAPKTGGKGRVKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANP 228
IF AP+ R S P + +P+S PP + P R LP R+ S P
Sbjct: 21 IFGAPRKREPARTVSTPAFMEPAPVSKKPLPPPTRRLP--RKPLPFRSTSLQP 71
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 112 SLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSA 222
S+P A S SPV++PP P R++ T + S+
Sbjct: 206 SVPAATAASTASPVKKPPPPAPPKPRRLAARTSSNSS 242
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 26.6 bits (56), Expect = 3.4
Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Frame = +1
Query: 55 FRENNIFD-APKTGGKGRVKSLPTPVANSPLS-PVRQP-PK----SNIK-PPTRISLPTR 210
F E+N F +PK R K+L + L P R P PK S IK PP+R+ LPT
Sbjct: 162 FEEDNFFSVSPK-----RRKNLFEKYGKTDLGKPARVPSPKKSLSSTIKSPPSRVKLPTS 216
Query: 211 TFSANP 228
S +P
Sbjct: 217 ILSKSP 222
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 26.2 bits (55), Expect = 4.5
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
Frame = +1
Query: 304 PEFGNKLESLPAYSDKLD----FKQERDLRMHFMSDLE-----RNIMKATLKFSTNYIMG 456
P+FGN SLP+ + L+ F ++ L D E N + ST I
Sbjct: 30 PQFGNTTNSLPSMNGLLNHENSFASQQSLSSSAFDDSEIVTSTANSTVVSSALSTPKIDD 89
Query: 457 YINSKDMRMTGKFASSSVK 513
NS D+R+ G SS K
Sbjct: 90 AQNSDDVRVDGTRRSSRAK 108
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 82 PKTGGKGRVKSLPTPVANSPLSPVRQPP-KSNIKPPTRISLPTRTFSANP 228
P T R P A++P P + PP S++ PP + + P ++ + P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAP 188
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 58 RENNIFDAPKT-GGKGRVKSLPTPVANSPLSPVRQP 162
+ N +DA +T G +V P P +PL+ + +P
Sbjct: 152 KHNAFYDASQTFGSTAKVAPAPAPSTKTPLANISKP 187
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 260 VKNQSSTEKMDILCRPSLVTNWKVCPRT 343
V+N SST K +L PS +T V PRT
Sbjct: 38 VENVSSTPKKGVLEDPSTLTPEVVTPRT 65
>SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 25.8 bits (54), Expect = 5.9
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = +2
Query: 233 SAASAAAL*VKNQSSTEKMDILCRPSLVTNWKVCPRTATNWISNKSVIY 379
S ASA AL V N S + + R S++ WKV T NK IY
Sbjct: 191 SKASAGALEVFNISHVKNPMVFLRNSVLKGWKVI-GTKPALPDNKDQIY 238
>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 368
Score = 25.4 bits (53), Expect = 7.8
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 301 PPEFGNKLES-LPAYSDKLDFKQERDLRMHFMSDLERNIMKA 423
P G+ + S LP S LDFKQE H MS L ++ K+
Sbjct: 303 PQSTGSSVSSSLPTLS--LDFKQEYSGNNHDMSGLSSSLSKS 342
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 632 LDDSDRIDICCQKMLSISQR 691
L+D DR CC++ LS +QR
Sbjct: 318 LEDIDRCIQCCRRFLSANQR 337
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 283 KDGYFVPPEFGNKLESLPAYSDKLDFKQERDLRMHFM 393
KD Y +P GN + L K+D ++R+ + +FM
Sbjct: 585 KDAYIIPMPSGNSVPELLDLLPKVDLPKDRNFQ-YFM 620
>SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 220
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 139 PLSPVRQPPKSNIKPPTRISLPTRTFSANPL 231
P SP + +S PPT IS+P S+NPL
Sbjct: 67 PFSPSKIMNRSISVPPTNISVP--QISSNPL 95
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,855,776
Number of Sequences: 5004
Number of extensions: 58561
Number of successful extensions: 209
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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