Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19b23
(695 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0235 + 32539025-32539886,32540330-32540473,32540595-325407... 32 0.38
04_04_0662 - 27051508-27051828,27051878-27053438,27054333-27054733 31 0.87
09_03_0125 - 12531409-12531442,12531577-12531668,12531747-125323... 31 1.2
06_03_0905 + 25843547-25844314 29 2.7
02_01_0791 - 5930553-5930802,5931042-5932351 29 2.7
11_01_0066 - 536281-537196,537397-537452 29 3.5
08_02_1227 - 25398063-25398302,25398629-25398790,25399019-253991... 29 3.5
06_03_0661 + 23225514-23227073 29 4.7
05_04_0163 + 18652306-18652839,18653785-18653853,18655139-186552... 29 4.7
03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-42... 29 4.7
11_06_0610 - 25449085-25453284 28 6.2
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647... 28 6.2
12_02_0749 - 22758317-22760407 28 8.1
09_04_0430 + 17502387-17503505 28 8.1
07_03_1486 + 26899479-26899549,26899861-26899989,26900649-269008... 28 8.1
01_01_0668 - 5109476-5110112,5110196-5110439,5110519-5110917,511... 28 8.1
>03_06_0235 +
32539025-32539886,32540330-32540473,32540595-32540747,
32540871-32540986,32541254-32541421,32541534-32541758,
32541884-32542015
Length = 599
Score = 32.3 bits (70), Expect = 0.38
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +1
Query: 79 APKTGGKGRVKSLPTPVANSPLSPVRQPPK 168
AP GG+GR+ + P P +++PL+ +PP+
Sbjct: 40 APDGGGQGRLPAPPPPTSDAPLAVQNKPPE 69
>04_04_0662 - 27051508-27051828,27051878-27053438,27054333-27054733
Length = 760
Score = 31.1 bits (67), Expect = 0.87
Identities = 21/78 (26%), Positives = 29/78 (37%)
Frame = +1
Query: 106 VKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANPLERXXXXXXXXXXXXXNRK 285
V +PTPV PV+QP + + PT A PL++
Sbjct: 393 VIQMPTPVQLQTPPPVKQPARQHQPQPTPPPPQAAPIPAAPLQQQPPQPQHKETIHHEAV 452
Query: 286 DGYFVPPEFGNKLESLPA 339
PP G+ LE +PA
Sbjct: 453 TPRRAPPTSGSSLELVPA 470
>09_03_0125 -
12531409-12531442,12531577-12531668,12531747-12532337,
12532454-12532789,12532899-12533156,12533867-12533971,
12534625-12534702,12535464-12535542,12535649-12535723,
12535828-12535946,12536042-12537106
Length = 943
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = -2
Query: 145 TAASWRQALAKI*HGPCHRSLARQKCYSLEKNGSL*LLVSTQKS 14
+A+ WR LA++ P S +++ S+++ GS +LVST+K+
Sbjct: 247 SASWWRPVLARMVGRPVSVSGLKKRLVSIDRKGSYTMLVSTRKT 290
>06_03_0905 + 25843547-25844314
Length = 255
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 118 PTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANPL 231
P P+ P PV PPK + P ++ PT + P+
Sbjct: 76 PPPLVAPPKVPVTHPPKGPVTRPPPVTYPTPPVTTPPV 113
>02_01_0791 - 5930553-5930802,5931042-5932351
Length = 519
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +2
Query: 50 VFFERITFLTRQRPVARAVSNLCQRLSPTRRC 145
VF + FLTR RPV V C + P RRC
Sbjct: 89 VFLSTVRFLTRPRPV-YLVDFACYKPPPERRC 119
>11_01_0066 - 536281-537196,537397-537452
Length = 323
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +1
Query: 118 PTPVANSPLSPVRQPPKSNIKPPTRISLPTRT 213
P +A P SP PP S PP PT T
Sbjct: 217 PPSIATPPPSPASPPPPSTATPPPPSPTPTTT 248
>08_02_1227 -
25398063-25398302,25398629-25398790,25399019-25399150,
25399909-25399961,25400465-25400942
Length = 354
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 130 ANSPLSPVRQPPKSNIKPPTRISLP 204
A SPL P PP SN +PP S+P
Sbjct: 328 AGSPLHPGIAPPSSNSQPPFLSSMP 352
>06_03_0661 + 23225514-23227073
Length = 519
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +2
Query: 50 VFFERITFLTRQRPVARAVSNLCQRLSPTRRC--RLFVSRQNLTSNHLRASL 199
VF + FLTR RPV + C + P R+C F+ +LT + A+L
Sbjct: 93 VFLSTLYFLTRPRPV-YLLDFACYKPDPQRKCTRETFMRCSSLTGSFTDANL 143
>05_04_0163 +
18652306-18652839,18653785-18653853,18655139-18655270,
18655424-18655477,18655570-18655614,18656166-18656305,
18657107-18657232,18657325-18657361
Length = 378
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 277 NRKDGYFVPPEFGNKLESLPA 339
NR++ FV + G KLESLPA
Sbjct: 96 NRREALFVLAQLGRKLESLPA 116
>03_01_0049 +
418957-419040,419599-419796,419918-420040,420172-420209,
420334-420502,421115-424273,424367-424485,424915-425116
Length = 1363
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +1
Query: 403 ERNIMKATLKFSTNYIMGYINSKDMRMTGKFASSSVKYKKTTEQHMSDSRCTTCNYR 573
+ N+ LK + + SK++ TG FA +S+ K ++ +D N+R
Sbjct: 557 DSNLQIEELKSQICQLEEELRSKELLHTGSFADASISSSKVLQEKCADLELKLLNFR 613
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 106 VKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANP 228
VKSLP P +P+S + PP ++ PP +SLP + P
Sbjct: 1261 VKSLPPP---APVS-LPPPPVKSLPPPAPVSLPPPVVKSLP 1297
>01_01_0829 +
6471032-6471870,6472490-6472685,6472772-6472956,
6473206-6473539,6473629-6473833,6474927-6475033,
6475117-6475269
Length = 672
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 495 CKQFCKIQKDYGAAHERFAMHHLQL 569
C++ +I YG AH+R A H++L
Sbjct: 257 CEEAVRIDPSYGRAHQRLASLHIRL 281
>12_02_0749 - 22758317-22760407
Length = 696
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 291 SIFSVDDWFFTYNAAADAALQRIG 220
SI + DDWF NA AAL R+G
Sbjct: 54 SILAEDDWFPRLNAEFAAALPRLG 77
>09_04_0430 + 17502387-17503505
Length = 372
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +1
Query: 103 RVKSLPTPVANSPLS-PVRQPPKSNIKPPTRIS-LPTRTFSANPLE 234
R LPTP P S P R P+S PP R++ P T +A P+E
Sbjct: 178 RAAPLPTPPRAPPQSTPPRAAPQST--PPQRVAPQPPATAAAPPIE 221
>07_03_1486 +
26899479-26899549,26899861-26899989,26900649-26900834,
26901025-26901247,26901662-26901666,26901796-26901924,
26902697-26902894,26903138-26903356,26903461-26903699,
26903797-26903888,26904009-26904224,26904327-26904554,
26904631-26904722,26904806-26904899,26905475-26905567,
26905667-26906640,26906727-26906841,26907135-26908895
Length = 1687
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 121 TPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANPL 231
T N S VR+P S+I+ P R + +R+ S +PL
Sbjct: 12 TQTTNFVWSVVRRPAASSIRSPVRPVISSRSRSTSPL 48
>01_01_0668 -
5109476-5110112,5110196-5110439,5110519-5110917,
5111390-5111668,5111886-5112257,5112371-5112475,
5112832-5112909,5112990-5113199,5113287-5113406,
5113508-5113606,5113685-5113750,5113914-5114141,
5114216-5114521,5115324-5115381
Length = 1066
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 97 KGRVK-SLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSA 222
KG V ++PT N+P +PV P + N PP ++ P T A
Sbjct: 99 KGAVSPAVPTRPQNAP-TPVTPPKEYNAPPPVELTPPAPTHVA 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,822,196
Number of Sequences: 37544
Number of extensions: 393479
Number of successful extensions: 1307
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1302
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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