Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19b23
(695 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15027| Best HMM Match : KIX (HMM E-Value=2) 30 1.6
SB_27527| Best HMM Match : MFAP1_C (HMM E-Value=0.57) 30 2.1
SB_23893| Best HMM Match : rve (HMM E-Value=3.1e-24) 30 2.1
SB_5433| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_36173| Best HMM Match : RVT_1 (HMM E-Value=1.2) 30 2.1
SB_47100| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 29 2.7
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 29 2.7
SB_738| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_41665| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_17599| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_47544| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_18512| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_34614| Best HMM Match : FMO-like (HMM E-Value=0) 29 4.8
SB_29559| Best HMM Match : zf-CCHC (HMM E-Value=0.0015) 29 4.8
SB_24355| Best HMM Match : SAM_2 (HMM E-Value=3e-07) 29 4.8
SB_23500| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8) 28 6.3
SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032) 28 6.3
SB_2838| Best HMM Match : DUF436 (HMM E-Value=3.5) 28 6.3
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_47268| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40) 28 8.3
>SB_15027| Best HMM Match : KIX (HMM E-Value=2)
Length = 547
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Frame = +1
Query: 325 ESLPAYSDKLDFKQERDLRMHFMSDLERNIMKATLK-FSTNYIMGYINSKDMRMTGKFAS 501
E+L SDK +K+ +DL + + R + K + F + + Y+ G+F
Sbjct: 200 EALRQLSDKEVYKETKDLTQYITELVNRRVRKLSADGFIDDKTLDYLIINGKPRAGRFYL 259
Query: 502 SSVKYKKTTEQHMSDSRCTTCNYRFKD 582
+KK S C TC + +
Sbjct: 260 HPKIHKKGNPSRPVISGCNTCTEKISE 286
>SB_27527| Best HMM Match : MFAP1_C (HMM E-Value=0.57)
Length = 818
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = +1
Query: 97 KGRVKSLPTPVANSPLSPVRQP----PKSNIKPPTRISLPTR 210
+ R SLP A+SP +P P P SN PP+ +SL R
Sbjct: 676 RARSLSLPCTAASSPSTPASSPSPTPPLSNSLPPSTLSLMLR 717
>SB_23893| Best HMM Match : rve (HMM E-Value=3.1e-24)
Length = 553
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Frame = +1
Query: 16 IFEC*PTVTMNRFFRENNIFDAPKTGGKGRVKSLPTPVANSP----LSPVRQPPKSNIKP 183
+ C P V+ E + P+ K +PT SP +PVR+ P+ KP
Sbjct: 488 VLPCTPVVSSKPILPEPEVTPLPEVSPKSSETVVPTCTTESPPDVASTPVRRYPRRTPKP 547
Query: 184 PTRISL 201
R+ L
Sbjct: 548 VVRLDL 553
>SB_5433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Frame = +1
Query: 325 ESLPAYSDKLDFKQERDLRMHFMSDLERNIMKATLK-FSTNYIMGYINSKDMRMTGKFAS 501
E L SDK +K+ +DL + + R + K + F + + Y+ TG+F
Sbjct: 928 EVLRQLSDKEVYKETKDLTQYITELVNRRVRKLSADGFIDDKTLDYLIINGKPRTGRFYL 987
Query: 502 SSVKYKKTTEQHMSDSRCTTCNYRFKD 582
+KK S C TC + +
Sbjct: 988 LPKIHKKGNPGRPVISGCNTCTEKISE 1014
>SB_36173| Best HMM Match : RVT_1 (HMM E-Value=1.2)
Length = 623
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Frame = +1
Query: 325 ESLPAYSDKLDFKQERDLRMHFMSDLERNIMKATLK-FSTNYIMGYINSKDMRMTGKFAS 501
E+L SDK +K+ +DL + + R + K + F + + YI G+F
Sbjct: 266 EALRQLSDKEVYKETKDLTQYITELVNRRVRKLSADGFIDDKTLDYIIINGKPRAGRFYL 325
Query: 502 SSVKYKKTTEQHMSDSRCTTCNYRFKD 582
+KK S C TC + +
Sbjct: 326 LPKIHKKGNPGRPVISGCNTCTEKISE 352
>SB_47100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 167
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -3
Query: 597 PCARVVFESIIASGASRIAHVLLRSLFVFYRTACKFA 487
PCA VV+ + AS A ++ L + + Y+T+ K +
Sbjct: 16 PCASVVYRLLFASNAMAVSRFLAIMVKILYKTSVKLS 52
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Frame = +1
Query: 79 APKTGGKGRVKSLPTPVANSPLSPVRQPPKSNIKPPTR-ISLPTRTFSANP 228
AP G R P P N P P+R P PP + P + S+NP
Sbjct: 230 APPPTGSSRPLPAPPPGENRPPPPMRGPTSGGEPPPPKNAPPPPKRGSSNP 280
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Frame = +1
Query: 79 APKTGGKGRVKSLPTPVANSPLSPVRQPPKSNIKPPTR-ISLPTRTFSANP 228
AP G R P P N P P+R P PP + P + S+NP
Sbjct: 142 APPPTGSSRPLPAPPPGENRPPPPMRGPTSGGEPPPPKNAPPPPKRGSSNP 192
>SB_738| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 108
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = +1
Query: 106 VKSLPT-PVANSPLSPVRQPPKSNI-KPPTR--ISLPTRTFSANP 228
+ S PT P+ + P SP+ PP + I PPT +S PT + + P
Sbjct: 16 IMSPPTNPIMSPPTSPIMSPPTNPIMSPPTNPIMSPPTNSIMSAP 60
>SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2346
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 8/40 (20%)
Frame = +1
Query: 115 LPTPVANSPLSPVRQPPKSN--------IKPPTRISLPTR 210
LP P+ PL P+R PP + + PP+RI LP++
Sbjct: 1340 LPLPLPRLPLPPLRLPPPHSRLPLPPPKLPPPSRIPLPSK 1379
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 115 LPTPVANSPLSPVRQPPKSNIKPPTRIS 198
LP P + PL P + PP S I P+++S
Sbjct: 1354 LPPPHSRLPLPPPKLPPPSRIPLPSKLS 1381
>SB_41665| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 657
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Frame = +1
Query: 325 ESLPAYSDKLDFKQERDLRMHFMSDLERNIMKATLK-FSTNYIMGYINSKDMRMTGKFAS 501
E+L SDK +K+ +DL + + R + K + F + + Y+ G+F
Sbjct: 187 EALRQLSDKEVYKETKDLTQYITELVNRRVRKLSADGFIDDKTLDYLIINGKPRAGRFYL 246
Query: 502 SSVKYKKTTEQHMSDSRCTTCNYRFKD 582
+KK S C TC + +
Sbjct: 247 LPKIHKKGNPGRPVISGCNTCTEKISE 273
>SB_17599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 803
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Frame = +1
Query: 325 ESLPAYSDKLDFKQERDLRMHFMSDLERNIMKATLK-FSTNYIMGYINSKDMRMTGKFAS 501
E L SDK +K+ +DL + + R + K + F + + Y+ G+F
Sbjct: 525 EVLRQLSDKEVYKETKDLTQYITELVNRRVRKLSADGFIDDKTLDYLIINGKPRVGRFYL 584
Query: 502 SSVKYKKTTEQHMSDSRCTTCNYRFKD 582
+KK+ S C TC + +
Sbjct: 585 LPKIHKKSNPGRPVISGCNTCTEKISE 611
>SB_47544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 585
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Frame = +1
Query: 325 ESLPAYSDKLDFKQERDLRMHFMSDLERNIMKATLK-FSTNYIMGYINSKDMRMTGKFAS 501
E+L SDK +K+ +DL + + R + K + F + + Y+ G+F
Sbjct: 185 EALRQLSDKEVYKETKDLTQYITELVNRRVRKLSADGFIDDKTLDYLIINGKPRAGRFYL 244
Query: 502 SSVKYKKTTEQHMSDSRCTTCNYRFKD 582
+KK S C TC + +
Sbjct: 245 LPKIHKKGNPGRPVISGCNTCTEKISE 271
>SB_18512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 551
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Frame = +1
Query: 325 ESLPAYSDKLDFKQERDLRMHFMSDLERNIMKATLK-FSTNYIMGYINSKDMRMTGKFAS 501
E+L SDK +K+ +DL + + R + K + F + + Y+ G+F
Sbjct: 138 EALRQLSDKEVYKETKDLTQYITELVNRRVRKLSADGFIDDKTLDYLIINGKPRAGRFYL 197
Query: 502 SSVKYKKTTEQHMSDSRCTTCNYRFKD 582
+KK S C TC + +
Sbjct: 198 LPKIHKKGNPGRPVISGCNTCTEKISE 224
>SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2143
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Frame = +1
Query: 85 KTGGKGRVKSLPTPVANSPLSPVRQPPKSNI---KPPTRISLPTRTFSANPLER 237
+T + RV++ P A P P PP SN+ PP + P + P ++
Sbjct: 64 ETAARSRVETTDGPAAVIPPPPPPPPPASNVPAPPPPPPVMPPQKVIMRKPTKK 117
>SB_34614| Best HMM Match : FMO-like (HMM E-Value=0)
Length = 475
Score = 28.7 bits (61), Expect = 4.8
Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 2/82 (2%)
Frame = +3
Query: 411 HHESHAKIFHQL--HYGLYKQ*RYAHDGQICKQFCKIQKDYGAAHERFAMHHLQL*IQRQ 584
HH K FH H+ LYK RY K+ D G + ++R+
Sbjct: 79 HHSYVMKYFHLFARHFDLYKYIRYRTKVLEVKKTDDFN-DTGNWELSYVSLEDTTKVKRE 137
Query: 585 HARMVFVCCGSHRKSRWTILTA 650
V VC G H K W + A
Sbjct: 138 VFNGVMVCVGHHSKPYWPVFPA 159
>SB_29559| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)
Length = 858
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 76 DAPKTGGKGRVKSLPTPVANSPLSPVRQPPKSNIKPPT 189
D +T G+ V P PL+P PPK+ + P+
Sbjct: 300 DPGQTQGEEAVPGTPLQKPGGPLAPAESPPKTGTEEPS 337
>SB_24355| Best HMM Match : SAM_2 (HMM E-Value=3e-07)
Length = 352
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 82 PKTGGKGRVKSLPTPVANSPLSPVRQPPKSNIKPP 186
P+T + KS P P+ +SPV++P K PP
Sbjct: 213 PRTNSSNKKKSAP-PLPKHVVSPVKRPNKVKAPPP 246
>SB_23500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 586
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Frame = +1
Query: 325 ESLPAYSDKLDFKQERDLRMHFMSDLERNIMKATLK-FSTNYIMGYINSKDMRMTGKFAS 501
E+L SDK +K+ +DL + + R + K + F + + Y+ G+F
Sbjct: 204 EALRQLSDKEVYKETKDLTQYITELVNRRVRKLSADGFIDDKTLDYLIINGKPRAGRFYL 263
Query: 502 SSVKYKKTTEQHMSDSRCTTCNYRFKD 582
+KK S C TC + +
Sbjct: 264 LPKIHKKGNPGRPVISGCNTCTEQISE 290
>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1212
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = +1
Query: 118 PTPVANSPLSPVRQPP---KSNIKPPTRISLPTRTFSANPLE 234
P+P + P P RQPP S PP R P T A+P E
Sbjct: 1062 PSPPPSEPAPPPRQPPPPSTSQPVPPPRQPDPIPTNPAHPTE 1103
>SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 82 PKTGGKGRVKSLPTPVANSPLSPVRQPPKSNIKPP 186
P+T + KS P P+ +SPV++P K PP
Sbjct: 213 PRTNSSNKKKSAP-PLPKHVVSPVKRPNKVKAPPP 246
>SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
Length = 519
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +1
Query: 118 PTPVANSPLSPVRQPPKSNIKPPTRI-SLPTRTFSANP 228
P P PL P+R+PP PP + S PT + P
Sbjct: 36 PIPHGPRPLPPLREPPTPAPTPPPALPSTPTLPLAPRP 73
>SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2142
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 112 SLPTPVANSPLSPVRQPPKS 171
SLP P+A+ L P QPPK+
Sbjct: 1496 SLPQPIASKQLEPPPQPPKA 1515
>SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)
Length = 521
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 79 APKTGGKG-RVKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPT 207
+PKT K R+KSL T SP R PK++ K + SL T
Sbjct: 349 SPKTSPKTMRMKSLKTSPKTSPEISPRTSPKTSSKTSPKTSLKT 392
>SB_2838| Best HMM Match : DUF436 (HMM E-Value=3.5)
Length = 422
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Frame = +1
Query: 325 ESLPAYSDKLDFKQERDLRMHFMSDLERNIMKATLK-FSTNYIMGYINSKDMRMTGKFAS 501
E+L SDK +K+ +DL + + R + K + F + + Y+ G+F
Sbjct: 188 EALRQLSDKEVYKETKDLTQYITELVNRRVRKLSADGFIDDKTLDYLIINGKPRAGRFYL 247
Query: 502 SSVKYKKTTEQHMSDSRCTTCNYRFKD 582
+KK S C TC + +
Sbjct: 248 LPKIHKKGYPGRPVISGCNTCTEKISE 274
>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2520
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 133 NSPLSPVRQPPKSNIKPPTRISLPTRTFSA 222
++PLSP PPKS ++ P + + SA
Sbjct: 2161 SNPLSPFHDPPKSPVEEPMQFEQLAKVLSA 2190
>SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 795
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 115 LPTPVANSPLSPVRQPPKSNIKPPTRISLP 204
LPTP+A+S P+ PP PPT I +P
Sbjct: 689 LPTPIASSEPLPLPPPP-----PPTGIDIP 713
>SB_47268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 722
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/50 (32%), Positives = 30/50 (60%)
Frame = +1
Query: 58 RENNIFDAPKTGGKGRVKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPT 207
++ + +PKTG + + +LP V + SPV++P KS +KP +++ T
Sbjct: 533 KKETVHWSPKTGVEEK-NTLP--VVPTWKSPVKKPTKSTVKPLPKLAKTT 579
>SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40)
Length = 2057
Score = 27.9 bits (59), Expect = 8.3
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = +1
Query: 316 NKLESLPAYSDKLDFKQERDLRMHFMSDLERNIMKATLKFSTNYIMGYINSKDMRMTGKF 495
N+ +S S L F E DLRM SDL + +K + ++SK ++ K
Sbjct: 998 NRRQSAGTKSKSLSFNNELDLRMRSTSDLSAH---PRIK-RHGSLANSLSSKAAKVKSKI 1053
Query: 496 ASSSVKYKKTTE 531
+SS K T E
Sbjct: 1054 SSSFFKKVTTVE 1065
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,793,969
Number of Sequences: 59808
Number of extensions: 464316
Number of successful extensions: 1597
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1588
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -