Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19b23
(695 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g01840.1 68418.m00103 ovate family protein 59% similar to ova... 32 0.42
At5g14920.1 68418.m01750 gibberellin-regulated family protein si... 31 0.55
At1g69280.1 68414.m07943 expressed protein 31 0.96
At5g56890.1 68418.m07099 protein kinase family protein contains ... 30 1.3
At5g43100.1 68418.m05261 aspartyl protease family protein low si... 30 1.3
At2g26640.1 68415.m03196 beta-ketoacyl-CoA synthase, putative si... 30 1.7
At2g24570.1 68415.m02934 WRKY family transcription factor identi... 29 2.9
At4g30680.1 68417.m04349 MA3 domain-containing protein similar t... 29 3.9
At2g44630.1 68415.m05555 kelch repeat-containing F-box family pr... 29 3.9
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 29 3.9
At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin fa... 29 3.9
At4g35240.1 68417.m05009 expressed protein contains Pfam domains... 28 5.1
At3g20850.1 68416.m02636 proline-rich family protein contains pr... 28 6.8
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 28 6.8
At1g18760.1 68414.m02339 zinc finger (C3HC4-type RING finger) fa... 28 6.8
At4g09030.1 68417.m01490 arabinogalactan-protein (AGP10) identic... 27 9.0
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 27 9.0
At3g14205.1 68416.m01795 phosphoinositide phosphatase family pro... 27 9.0
At2g26780.1 68415.m03212 expressed protein contains Pfam profile... 27 9.0
At1g60590.1 68414.m06820 polygalacturonase, putative / pectinase... 27 9.0
>At5g01840.1 68418.m00103 ovate family protein 59% similar to ovate
protein (GI:23429649) [Lycopersicon esculentum];
contains TIGRFAM TIGR01568 : uncharacterized
plant-specific domain TIGR01568
Length = 270
Score = 31.9 bits (69), Expect = 0.42
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +1
Query: 58 RENNIFDAPK-TGGKGRVKSLPTPVANSPLS--PVRQPPKSNIKPPTRISLPTRTFSANP 228
++ N+ P T K + ++PTP + +PLS P R+P S+ PP S P R S N
Sbjct: 28 KKKNLQSQPNSTTSKKKHHAVPTPTSTTPLSPRPPRRPSHSSKAPP---SHPPRKSSGNR 84
Query: 229 L 231
L
Sbjct: 85 L 85
>At5g14920.1 68418.m01750 gibberellin-regulated family protein
similar to SP|P46689 Gibberellin-regulated protein 1
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 275
Score = 31.5 bits (68), Expect = 0.55
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Frame = +1
Query: 67 NIFDAPKTGGKGRVKSLPTPV------ANSPLSPVRQPPKSNIKPPTRISLPTRTFSANP 228
N+ A + SLPTP A P SP +PP + KPPT + P + + P
Sbjct: 17 NVVFAASNEESNALVSLPTPTLPSPSPATKPPSPALKPPTPSYKPPTLPTTPIKPPTTKP 76
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 124 PVANSPLSPVRQPPKSNIKPPTRISLPTR 210
P N P +PV+ P +KPPT + TR
Sbjct: 185 PTYNPPTTPVKPPTAPPVKPPTPPPVRTR 213
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Frame = +1
Query: 106 VKSLPTPVANSP--LSPVRQPPKSNIKPPTR---ISLPTRTFSANP 228
VK TP SP P +PP S +KPPT + PT T P
Sbjct: 139 VKPPTTPPVQSPPVQPPTYKPPTSPVKPPTTTPPVKPPTTTPPVQP 184
>At1g69280.1 68414.m07943 expressed protein
Length = 400
Score = 30.7 bits (66), Expect = 0.96
Identities = 25/94 (26%), Positives = 29/94 (30%), Gaps = 2/94 (2%)
Frame = -2
Query: 586 CCL*IYNCKWCIANRSCAAP*SFCILQNCLQICPSCAYLYCLYNP*CNWWKILAW--LS* 413
CC C C SC C C C + C YN C W W S
Sbjct: 304 CCKNTGPCFSCCRLPSCGYNFFCCKRLKCCPCFSWCRWPSCDYNSSCGWLFCCHWSCWSC 363
Query: 412 CCVLNRS*NAYVDHALV*NPVCRCTRANFPICYQ 311
CC + S D N R +A F +Q
Sbjct: 364 CCCSSSSKKVVDDEMTRGNDEQRLQKAEFKTSHQ 397
>At5g56890.1 68418.m07099 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 1113
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 76 DAPKTGG-KGRVKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSAN 225
DAPK GRV P PV+ SP+S + P + PPT ++P R S N
Sbjct: 138 DAPKEPPFSGRVT--PAPVS-SPVSDIPPIPSVALPPPTPSNVPPRNASNN 185
>At5g43100.1 68418.m05261 aspartyl protease family protein low
similarity to CND41, chloroplast nucleoid DNA binding
protein [Nicotiana tabacum] GI:2541876; contains Pfam
profile PF00026: Eukaryotic aspartyl protease
Length = 631
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +1
Query: 40 TMNRFFRENNIFDAPKTGGKGRVKSLPTPVANSPLSPVRQPPKSNIKP-PTRISLPT 207
T+ + REN+ KT + L P + +P SP+ Q SNI P P PT
Sbjct: 399 TLVTYDRENDKLGFLKTNCSDIWRRLAAPESPAPTSPISQNKSSNISPSPATSESPT 455
>At2g26640.1 68415.m03196 beta-ketoacyl-CoA synthase, putative
similar to beta-ketoacyl-CoA synthase [Simmondsia
chinensis][GI:1045614]
Length = 509
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +2
Query: 50 VFFERITFLTRQRPVARAVSNLCQRLSPTRRC--RLFVSRQNLTSNHLRASL 199
VF I F+TR RPV V+ C + +R+C ++F+ R LT + +L
Sbjct: 86 VFLMTIYFMTRPRPV-YLVNFSCFKPDESRKCTKKIFMDRSKLTGSFTEENL 136
>At2g24570.1 68415.m02934 WRKY family transcription factor identical
to WRKY transcription factor 17 GI:15991743 from
[Arabidopsis thaliana]
Length = 321
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 148 PVRQPPKSNIKPPTRISLPTRTFSANP 228
PV PP S++ PP +++ P T + P
Sbjct: 76 PVHSPPSSSVPPPVKVTTPAPTQISAP 102
>At4g30680.1 68417.m04349 MA3 domain-containing protein similar to
SP|Q03387 Eukaryotic initiation factor (iso)4F subunit
P82-34 (eIF-(iso)4F P82-34) {Triticum aestivum};
contains Pfam profile PF02847: MA3 domain
Length = 263
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 94 GKGRVKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPT 207
G + K +P+P + P QP + PPT SL T
Sbjct: 64 GSQQPKPVPSPTRQTVEKPKPQPQPQEVAPPTTTSLNT 101
>At2g44630.1 68415.m05555 kelch repeat-containing F-box family
protein similar to SKP1 interacting partner 6
[Arabidopsis thaliana] GI:10716957; contains Pfam
profiles PF00646: F-box domain, PF01344: Kelch motif
Length = 372
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 130 ANSPLSPVRQPPKSNIKPPTRISLP 204
A+ P QPP S++ PP+ SLP
Sbjct: 4 ADEPPQKTNQPPSSSLTPPSLFSLP 28
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = +1
Query: 112 SLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANP 228
S P P SP PV PP + PP P FS P
Sbjct: 566 SPPPPHVYSPPPPVASPPPPSPPPPVHSPPPPPVFSPPP 604
Score = 28.3 bits (60), Expect = 5.1
Identities = 20/43 (46%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 106 VKSLPTPVANSPL-SPVRQPPK-SNIKPPTRISLPTRTFSANP 228
V S P PV + P SPV PP S+ PP S P TFS P
Sbjct: 599 VFSPPPPVFSPPPPSPVYSPPPPSHSPPPPVYSPPPPTFSPPP 641
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/41 (43%), Positives = 19/41 (46%)
Frame = +1
Query: 106 VKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANP 228
V S P PVA SP P PP + PP S P FS P
Sbjct: 572 VYSPPPPVA-SPPPPSPPPPVHSPPPPPVFSPPPPVFSPPP 611
>At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin
family protein similar to arabinogalactan protein
[Daucus carota] GI:11322245; contains Pfam profile
PF01190: Pollen proteins Ole e I family
Length = 359
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 85 KTGGKGRVKSLPTPVANSPLSPVRQPP-KSNIKPPTR 192
K+ K VK+ +P A P+ P PP K+ +KPPT+
Sbjct: 69 KSPVKPPVKAPVSPPAKPPVKPPVYPPTKAPVKPPTK 105
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 97 KGRVKSLPTPVANSPLSPVRQPP-KSNIKPPTR 192
K VK +P A P+ P PP K+ +KPPT+
Sbjct: 105 KPPVKPPVSPPAKPPVKPPVYPPTKAPVKPPTK 137
>At4g35240.1 68417.m05009 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 828
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +1
Query: 31 PTVTMNRFFRENNIFDAPKTGGKGRVKSLPTPVANSPLSPVRQPPKSN 174
P N +F +N P G G + T A P P PP+SN
Sbjct: 229 PYPPQNSYFGYSNPVPGPGPGYYGSSSASTTAAATKPPPPPPSPPRSN 276
>At3g20850.1 68416.m02636 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 134
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/56 (25%), Positives = 24/56 (42%)
Frame = +1
Query: 40 TMNRFFRENNIFDAPKTGGKGRVKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPT 207
T N + +++ +P + PTPV + P + + PP PP + PT
Sbjct: 32 TYNNYQPQHSPLPSPVYSSPADLPPPPTPVYSPPPADLPPPPTPYYSPPADLPPPT 87
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 27.9 bits (59), Expect = 6.8
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Frame = +1
Query: 106 VKSLPTPVANSPLSPVRQPP-----KSNIKPPTRISLPTRTFSANPLERXXXXXXXXXXX 270
V S P PV + P PV+ PP + PP S PT+T P+
Sbjct: 643 VYSPPPPVYSPPPPPVKSPPPPPVYSPPLLPPKMSSPPTQT----PVNSPPPRTPSQTVE 698
Query: 271 XXNRKDGYFVPPEFGNKLESLP 336
+ + +PP G++ S P
Sbjct: 699 APPPSEEFIIPPFIGHQYASPP 720
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = +1
Query: 106 VKSLPTPVANSPLSPVRQPPKSNIKPPTRI-SLPTRTFSANP 228
V S P PV + P PV PP PP + S P +S P
Sbjct: 577 VHSPPPPVYSPPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPP 618
>At1g18760.1 68414.m02339 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 224
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = +1
Query: 463 NSKDMRMTGKFASSSVK---YKKTTEQHMSDSRCTTCNYRFKDNTRAWFL 603
N+ +R K +S+ YKKTT S RCT C F D T+ L
Sbjct: 145 NNISLRPANKLVVNSLARKIYKKTTS---STERCTICLEEFNDGTKVMTL 191
>At4g09030.1 68417.m01490 arabinogalactan-protein (AGP10) identical
to gi|10880497|gb|AAG24278; supported by Ceres cDNA
265772
Length = 127
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +1
Query: 118 PTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANP 228
P P SPL QPP++ P+ PT T SA P
Sbjct: 26 PAPT-RSPLPSPAQPPRTAAPTPSITPTPTPTPSATP 61
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +1
Query: 106 VKSLPTPVANSPLSPVRQPPKSNIKPPTRISLP 204
V S P P +SP PV PP PP + P
Sbjct: 681 VHSPPPPPVHSPPPPVHSPPPPVHSPPPPVHSP 713
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +1
Query: 106 VKSLPTPVANSPLSPVRQPPKSNIKPPTRISLP 204
V S P P +SP PV PP PP + P
Sbjct: 763 VHSPPPPPVHSPPPPVHSPPPPVHSPPPPVHSP 795
>At3g14205.1 68416.m01795 phosphoinositide phosphatase family
protein contains similarity to phosphoinositide
phosphatase SAC1 [Rattus norvegicus]
gi|11095248|gb|AAG29810; contains Pfam domain, PF02383:
SacI homology domain; identical to SAC domain protein 2
(SAC2) GI:31415720
Length = 808
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +1
Query: 61 ENNIFDAPKTGGKGRVKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANPL 231
E +F+ + G GR+ S+ + PL ++ + NIKP +S F A L
Sbjct: 272 EQIVFEEAQDGNPGRISSVVQNRGSIPLFWSQETSRLNIKPDIILSPKDPNFEATRL 328
>At2g26780.1 68415.m03212 expressed protein contains Pfam profile
TBP (TATA-binding protein) -interacting protein 120
(TIP120); contains TIGRFAM profile TIGR01612:
reticulocyte binding protein
Length = 1866
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -3
Query: 612 HNIQKPCARVVFESI--IASGASRIAHVLLRSLFVFYRTACKFARHA 478
H+ Q+P A+ E + IASG + L+ LF+ + CKFA A
Sbjct: 262 HSSQEPVAKRGEELLKKIASGTNLDDPKLINRLFLLFNDYCKFAMSA 308
>At1g60590.1 68414.m06820 polygalacturonase, putative / pectinase,
putative similar to polygalacturonase PG1 (GI:5669846),
PG2 (GI:5669848) from [Glycine max]; contains PF00295:
Glycosyl hydrolases family 28 (polygalacturonases)
Length = 540
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +1
Query: 85 KTGGKGRVKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANPLE 234
K+ K ++K+ P P +N V QPP+ PP + P P+E
Sbjct: 70 KSKPKPKMKTQP-PKSNDGSPVVSQPPQVQQPPPPHVQPPPTPLPLQPVE 118
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,989,294
Number of Sequences: 28952
Number of extensions: 311409
Number of successful extensions: 1268
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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