Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19b22
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0343 + 28132348-28132878,28133256-28133366,28133477-281335...    45   4e-05
02_01_0316 + 2125283-2125687,2125768-2125881,2125986-2126099,212...    33   0.14 

>02_05_0343 +
           28132348-28132878,28133256-28133366,28133477-28133590,
           28134077-28134367,28134447-28134557,28134658-28134711,
           28135587-28135666,28135749-28135864,28136491-28136605,
           28136740-28136788,28136984-28137106
          Length = 564

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 28/100 (28%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
 Frame = +1

Query: 334 PSMESEPDFSEGLYGNMKMIQ-SSGEHRDRVYTDVENLSIKMDGQTVWVRARLQTSRAKG 510
           P  +++  F+   YG++ + +  S     RV+T++  L     G++V +R   Q  R   
Sbjct: 56  PQADADDPFAAN-YGDVPVEEIQSKTISGRVWTEIGGLDEAAAGRSVLIRGAAQAIRPVS 114

Query: 511 KQ-CFAVLRQTSSTVQLLVSVNEQRKISKQMVKFTGNITR 627
           K+  F VLR++ STVQ ++  +    +S QMV+F  ++++
Sbjct: 115 KKMAFVVLRESMSTVQCVLVASADAGVSTQMVRFATSLSK 154


>02_01_0316 +
           2125283-2125687,2125768-2125881,2125986-2126099,
           2126271-2126561,2126658-2126768,2127317-2127370,
           2127555-2127634,2127912-2128027,2128141-2128382
          Length = 508

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 424 YTDVENLSIKMDGQTVWVRARLQTSRAKGKQ-CFAVLRQTSSTVQLLV 564
           + DV  L   + G+ V VR      RA G++  F VLRQ SSTVQ +V
Sbjct: 42  WADVAALGPDVAGRAVRVRGAAHAVRAVGRRVAFLVLRQGSSTVQCVV 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,587,982
Number of Sequences: 37544
Number of extensions: 230459
Number of successful extensions: 483
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)