Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19b22
         (628 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26870.1 68417.m03867 aspartyl-tRNA synthetase, putative / as...    53   2e-07
At4g31180.2 68417.m04427 aspartyl-tRNA synthetase, putative / as...    51   7e-07
At4g31180.1 68417.m04426 aspartyl-tRNA synthetase, putative / as...    51   7e-07
At4g22430.1 68417.m03241 hypothetical protein                          27   7.7  

>At4g26870.1 68417.m03867 aspartyl-tRNA synthetase, putative /
           aspartate--tRNA ligase, putative simialr to
           aspartate-tRNA ligase (EC 6.1.1.12) from Drosophila
           melanogaster GI:4512034, Homo sapiens SP|P14868, Rattus
           norvegicus SP|P15178; contains Pfam profile PF00152 tRNA
           synthetases class II (D, K and N)
          Length = 532

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 29/97 (29%), Positives = 50/97 (51%)
 Frame = +1

Query: 337 SMESEPDFSEGLYGNMKMIQSSGEHRDRVYTDVENLSIKMDGQTVWVRARLQTSRAKGKQ 516
           S+E E +     YG++   +       +  TDV NL  ++ G  V +R RL  +R  G +
Sbjct: 44  SLEEEDESCSSNYGDVTTNELQSAVEGKELTDVSNLVEEIVGSEVSIRGRLHKNRLVGTK 103

Query: 517 CFAVLRQTSSTVQLLVSVNEQRKISKQMVKFTGNITR 627
            F +LR++  TVQ +V   E+ ++   M+KF   ++R
Sbjct: 104 LFVILRESGFTVQCVV---EETRVGANMIKFVKQLSR 137


>At4g31180.2 68417.m04427 aspartyl-tRNA synthetase, putative /
           aspartate--tRNA ligase, putative similar to
           Aspartyl-tRNA synthetase (Aspartate--tRNA ligase)
           (AspRS) [Homo sapiens] GI:20178330
          Length = 558

 Score = 50.8 bits (116), Expect = 7e-07
 Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 12/109 (11%)
 Frame = +1

Query: 337 SMESEPDFSEGLYGNMKM--IQSSGEHR---------DRVYTDVENLSIKMDGQTVWVRA 483
           S+E   +FS   YG++ +  +QSS + +          + +TDV +L  +M    V +R 
Sbjct: 56  SLEENDEFSNN-YGDVTLTELQSSADPKAGKWIEAVEGKEWTDVSDLVEEMLESEVLIRG 114

Query: 484 RLQTSR-AKGKQCFAVLRQTSSTVQLLVSVNEQRKISKQMVKFTGNITR 627
           R+ T+R    K  F VLR++ STVQ +VS +E+ K+   MVK+   ++R
Sbjct: 115 RVHTNRPTSNKLGFVVLRESGSTVQCVVSQSEKTKVGANMVKYLKQLSR 163


>At4g31180.1 68417.m04426 aspartyl-tRNA synthetase, putative /
           aspartate--tRNA ligase, putative similar to
           Aspartyl-tRNA synthetase (Aspartate--tRNA ligase)
           (AspRS) [Homo sapiens] GI:20178330
          Length = 558

 Score = 50.8 bits (116), Expect = 7e-07
 Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 12/109 (11%)
 Frame = +1

Query: 337 SMESEPDFSEGLYGNMKM--IQSSGEHR---------DRVYTDVENLSIKMDGQTVWVRA 483
           S+E   +FS   YG++ +  +QSS + +          + +TDV +L  +M    V +R 
Sbjct: 56  SLEENDEFSNN-YGDVTLTELQSSADPKAGKWIEAVEGKEWTDVSDLVEEMLESEVLIRG 114

Query: 484 RLQTSR-AKGKQCFAVLRQTSSTVQLLVSVNEQRKISKQMVKFTGNITR 627
           R+ T+R    K  F VLR++ STVQ +VS +E+ K+   MVK+   ++R
Sbjct: 115 RVHTNRPTSNKLGFVVLRESGSTVQCVVSQSEKTKVGANMVKYLKQLSR 163


>At4g22430.1 68417.m03241 hypothetical protein
          Length = 348

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
 Frame = -1

Query: 442 NFQHQCKPCHDVPLTIGSFSYSHKVLLRSQALIPLMAELMKPYARLSFV---VSQRFWQL 272
           +F  + K CH +PL   + + +   L  S   +  +  L +P   L  V   +    WQL
Sbjct: 168 DFYGKPKDCHFIPLPDHALNRNKTCLATSSGFVMYIKTLAQPGGNLLKVWRLIDDSAWQL 227

Query: 271 FW 266
            W
Sbjct: 228 MW 229


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,379,714
Number of Sequences: 28952
Number of extensions: 200307
Number of successful extensions: 484
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)