Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19b20
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.06 |||cargo receptor for soluble proteins |Schizosacchar...    81   1e-16
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac...    29   0.41 
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    29   0.54 
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    27   2.2  
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    26   3.8  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    26   3.8  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    26   5.1  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    26   5.1  
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    25   6.7  
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    25   6.7  
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe...    25   6.7  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    25   6.7  

>SPCC970.06 |||cargo receptor for soluble proteins
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 302

 Score = 81.4 bits (192), Expect = 1e-16
 Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 5/154 (3%)
 Frame = +1

Query: 175 LPTVARLCLISTFLEDGLRMWFQWSEQ----RDYMDMSWGCGKFLATMFVIVNLFGQLGG 342
           +P + R  +++T+ ED +R+  QW EQ    RDY    +G    L  +FV V L   L G
Sbjct: 54  MPLLGRFLIVATYFEDAIRIVTQWPEQVSYMRDYRRFRFGTAPLL--LFVCVVLM--LVG 109

Query: 343 CVMVLGRLKVDIACGVLFFIVVLQTFAYSILWDVQ-FXXXXXXXXXXXXXXXXXXXXXXX 519
             +V+ + +   A G L F+ +LQ FAY ++   + F                       
Sbjct: 110 STLVVFKKRQAYAIGSLLFVTLLQAFAYGLITSGEMFFRNMSVIGGLCLVASDTFIHRRI 169

Query: 520 SLFAGVPSLGENKPKTYLQLAGRILLAFMFITLL 621
           + FAG+P++ E+  +TY QLAGR+LL FMF+ LL
Sbjct: 170 NRFAGLPAVSEHNKRTYFQLAGRVLLIFMFLGLL 203


>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 446

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +1

Query: 103 QIPNEYVSTAEDVADQVIRKGKNVLPTVARLCLISTFLEDGLRMWFQ 243
           QIP    STA+  A+ + ++ +  LP V   C   TF  D L  +FQ
Sbjct: 41  QIPQIEGSTAKRDAEHLGKRHREFLPRVTAYCTCDTFRVDLLFKFFQ 87


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = -1

Query: 313 SQTLWRGICRSPRTCPCSLS 254
           ++TLW  ICR  RTCP SLS
Sbjct: 352 ARTLW-AICRHLRTCPLSLS 370


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 208 TFLEDGLRMWFQWSEQRDYMDM 273
           T  +DGLR+W  W   +D  D+
Sbjct: 181 TIRKDGLRLWGSWKRGKDESDL 202


>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -1

Query: 541 TARPRTDCALQREPPPTPAVALRSMPNCGEGTVRPIV 431
           TA P     L R PPP P   +R + +C      P++
Sbjct: 255 TAVPTIHQILLRTPPPKPLPRIRFIRSCSSPLAPPVL 291


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 434 SILYANVCNTTMKNSTPQAISTLSLPSTITH 342
           +I  +N  NTT   ST Q  S+  +PS + H
Sbjct: 48  AIPQSNALNTTPNESTSQIDSSPKIPSAVPH 78


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -3

Query: 407 TTMKNSTPQAISTLSLPST-ITHPP 336
           T    STPQ  +T S P+T  THPP
Sbjct: 279 TPQSGSTPQMQNTTSQPTTHDTHPP 303


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 343 ILLIDQINLLSQTLWRGICRSPRTCPCSLS 254
           + L+  +NL S  L + +C S +  PC L+
Sbjct: 6   LFLLQNVNLESNYLLKRVCLSLKLSPCKLT 35


>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 580 RVASTSSVCSLRATARPRTDCALQREPPPT 491
           R AST++    R  A P     +Q+ PPPT
Sbjct: 18  RSASTAAALPPRTMAPPPAPSRVQQAPPPT 47


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -3

Query: 410 NTTMKNSTPQAISTLSLP 357
           NTTMK+S  QA++ ++LP
Sbjct: 226 NTTMKSSLNQALTLINLP 243


>SPBC16H5.11c |skb1|rmt5|type II protein arginine
           N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 645

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +1

Query: 214 LEDGLRMWFQW 246
           L DG+R+WF+W
Sbjct: 601 LTDGMRVWFEW 611


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -3

Query: 455 RRNCTSHSILYANVCNTTMKNSTPQAISTLSLPSTITHPP 336
           R +C  H    +  C+   K      +S+++LPS + +PP
Sbjct: 116 RNDCIFHDA--SGACHFFFKEVGNWTVSSIALPSNLANPP 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,558,490
Number of Sequences: 5004
Number of extensions: 51761
Number of successful extensions: 160
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)