Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19b20
(622 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0743 + 24835349-24836009,24836925-24837068,24837154-248373... 35 0.045
05_07_0280 - 28920864-28920971,28921076-28921175,28921267-289213... 34 0.079
08_02_1350 - 26312275-26313613,26314833-26315110 31 0.56
03_05_0333 + 23245139-23245224,23245527-23245633,23246372-23247282 30 1.3
04_04_0734 + 27648661-27649596 30 1.7
05_05_0315 - 24030695-24030787,24030896-24030995,24031120-240312... 29 2.3
01_06_1074 + 34318685-34319314,34319429-34319546,34319662-343198... 29 2.3
08_01_0542 + 4712480-4712635,4712683-4712787 29 3.0
08_01_0437 + 3850137-3850581,3851134-3851159 28 5.2
12_02_0766 - 22982606-22983288,22984352-22984706 28 6.9
07_03_0588 - 19715677-19715754,19715843-19715942,19716170-197162... 28 6.9
06_03_1064 - 27300735-27301829 27 9.1
06_03_0841 - 25297531-25298547 27 9.1
03_03_0164 - 14979364-14979479,14979613-14980102 27 9.1
02_05_1339 + 35793795-35794922,35795009-35795233,35795314-35795460 27 9.1
>01_05_0743 +
24835349-24836009,24836925-24837068,24837154-24837306,
24837627-24837742,24837826-24837993,24838610-24838737,
24838827-24838926,24839119-24839205
Length = 518
Score = 35.1 bits (77), Expect = 0.045
Identities = 21/59 (35%), Positives = 29/59 (49%)
Frame = +3
Query: 393 VLHSCITDIRVQYTMGRTVPSPQFGIDRSATAGVGGGSR*RAQSVRGRAVARREQTEDV 569
VL + D+R YT GR + QFG+ T G R +S+ R +A R+ EDV
Sbjct: 54 VLGRPMEDVRATYTFGRELGRGQFGVTYLVT-HKATGKRFACKSIATRKLAHRDDIEDV 111
>05_07_0280 -
28920864-28920971,28921076-28921175,28921267-28921394,
28922013-28922180,28922280-28922395,28922584-28922736,
28922904-28923047,28923401-28924133
Length = 549
Score = 34.3 bits (75), Expect = 0.079
Identities = 21/59 (35%), Positives = 30/59 (50%)
Frame = +3
Query: 393 VLHSCITDIRVQYTMGRTVPSPQFGIDRSATAGVGGGSR*RAQSVRGRAVARREQTEDV 569
VL + D+R YT GR + QFG+ AT G R +S+ R +AR + +DV
Sbjct: 78 VLGRPMEDVRATYTFGRELGRGQFGVTYLAT-HKPTGRRYACKSIAARKLARPDDLDDV 135
>08_02_1350 - 26312275-26313613,26314833-26315110
Length = 538
Score = 31.5 bits (68), Expect = 0.56
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 4/139 (2%)
Frame = -3
Query: 455 RRNC-TSHSILYANVC-NTTMKNSTPQAISTLSLPSTITHPPN*PNKFTITNIVARNLPQ 282
R NC T H++ Y C + +S+P IS L ++ +RN+P
Sbjct: 387 RINCGTLHNVAYQENCWSEAQSSSSPPDISELG-DERGGFSSGEETMYSAETRESRNIPS 445
Query: 281 PQDMS--M*SLCSDHWNHMRRPSSRNVDIRHSRATVGKTFLPFRIT*SATSSAVDTYSLG 108
P++ + M NH + S ++V+ + TF+P R ++A+ S
Sbjct: 446 PKEKNPKMVGRSQSFVNHSKWDSPKSVESSKGAPSKSHTFIPLRKP-HLQAAAISQKSQD 504
Query: 107 ICIFHAEHSTNTEKRNLTE 51
F S++ +KRNL++
Sbjct: 505 --FFSPTVSSSMKKRNLSQ 521
>03_05_0333 + 23245139-23245224,23245527-23245633,23246372-23247282
Length = 367
Score = 30.3 bits (65), Expect = 1.3
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Frame = +3
Query: 213 PGGRSPHVVPVVRAERLHGHVL-GLRQIPRHNVCDS--KFIWSIRRMCYGARKAQSGYRL 383
PGG S G V G R+ + V D+ + + +RR+ YG R+ SG RL
Sbjct: 97 PGGGSARSAAAAAPTGRPGTVAAGTRRAGKKAVLDAGGRRVGHLRRLSYGVRERGSGRRL 156
Query: 384 RRAVLHSCITDIRVQYTMG 440
R L C+T+ V + G
Sbjct: 157 TR--LGWCMTEFGVDHGGG 173
>04_04_0734 + 27648661-27649596
Length = 311
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 520 CALQREPPPTPAVALRSMPNCGEG 449
CA PPP+PA L+ +P C G
Sbjct: 205 CAPPPNPPPSPATPLQPLPECDGG 228
>05_05_0315 -
24030695-24030787,24030896-24030995,24031120-24031247,
24031350-24031517,24031626-24031741,24031773-24031896,
24032085-24032254,24032255-24032999
Length = 547
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +3
Query: 393 VLHSCITDIRVQYTMGRTVPSPQFGIDRSATAGVGGGSR*RAQSVRGRAVARREQTEDV 569
VL + D++ YT+G+ + QFG+ S G R +++ R ++ +E EDV
Sbjct: 56 VLGRPMEDVKSIYTVGKELGRGQFGV-TSLCTHKATGQRFACKTISKRKLSTKEDVEDV 113
>01_06_1074 +
34318685-34319314,34319429-34319546,34319662-34319814,
34319906-34320021,34320135-34320302,34320424-34320551,
34320645-34320744,34320866-34320958
Length = 501
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +3
Query: 393 VLHSCITDIRVQYTMGRTVPSPQFGIDRSATAGVGGGSR*RAQSVRGRAVARREQTEDV 569
VL + D+R YT+G+ + QFG+ S G + +++ R ++ +E EDV
Sbjct: 49 VLGRPMEDVRSIYTIGKELGRGQFGV-TSLCTHKATGQKFACKTIAKRKLSTKEDVEDV 106
>08_01_0542 + 4712480-4712635,4712683-4712787
Length = 86
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +2
Query: 197 ALYPHSWRTVSACGSSGQ---SRETTWTCPGAAANSS 298
A+ H+W +CGSSG + ETT T P A S
Sbjct: 14 AMIAHAWHDDGSCGSSGAAAIAAETTQTAPTTEARIS 50
>08_01_0437 + 3850137-3850581,3851134-3851159
Length = 156
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -1
Query: 484 VALRSMPNCGEGTVRPIVYCTRMSVIQL*RTARRKRYP 371
V LRS P CG R +V+C +Q ARR+R P
Sbjct: 12 VQLRSHP-CGPPMGRTMVWCLHQDSVQRCAHARRRRRP 48
>12_02_0766 - 22982606-22983288,22984352-22984706
Length = 345
Score = 27.9 bits (59), Expect = 6.9
Identities = 8/25 (32%), Positives = 12/25 (48%)
Frame = +2
Query: 194 CALYPHSWRTVSACGSSGQSRETTW 268
C YP +W + C G+S+ W
Sbjct: 170 CIGYPPAWEKIKICSGHGRSKHGAW 194
>07_03_0588 -
19715677-19715754,19715843-19715942,19716170-19716297,
19716385-19716552,19716623-19716735,19716820-19716972,
19717082-19717225,19718710-19719427
Length = 533
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +3
Query: 414 DIRVQYTMGRTVPSPQFGIDRSATAGVGGGSR*RAQSVRGRAVARREQTEDV 569
D+R Y++G+ + QFG+ T + G + +S+ R + + ED+
Sbjct: 80 DVRSVYSLGKELGRGQFGVTYLCTE-IASGKQYACKSISKRKLVSKADKEDI 130
>06_03_1064 - 27300735-27301829
Length = 364
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -1
Query: 535 RPRTDCALQREPPPTPAVALRSMPNCGEGTVRPIVYCTRMSVIQL*RTARRK 380
RP+ +R+ P T + LR P G G+V+ + C + Q R + K
Sbjct: 49 RPKDPWVGRRDRPLTLKLVLRGAPRTGSGSVKAQLSCCLVDPTQKLRPSEMK 100
>06_03_0841 - 25297531-25298547
Length = 338
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 438 GRTVPSPQFGIDRSATAGVGGGSR*RAQSVRGRAVARREQTEDVLATR 581
G P+ + ++R VGGG A + RG AV + + LAT+
Sbjct: 232 GGAPPAARAAVERLQVVAVGGGGEEAAAASRGCAVCKDGIAQGELATQ 279
>03_03_0164 - 14979364-14979479,14979613-14980102
Length = 201
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1
Query: 511 QREPPPTPAVALRSMPN 461
+R PPPT A LRS PN
Sbjct: 142 RRPPPPTAAAPLRSSPN 158
>02_05_1339 + 35793795-35794922,35795009-35795233,35795314-35795460
Length = 499
Score = 27.5 bits (58), Expect = 9.1
Identities = 20/60 (33%), Positives = 27/60 (45%)
Frame = +3
Query: 390 AVLHSCITDIRVQYTMGRTVPSPQFGIDRSATAGVGGGSR*RAQSVRGRAVARREQTEDV 569
AVL +R YT+GR + QFG T V G+ +S+ R + E EDV
Sbjct: 15 AVLGHETPALREVYTVGRKLGQGQFGTTYLCTQ-VSTGAEYACKSIAKRKLLSPEDVEDV 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,791,231
Number of Sequences: 37544
Number of extensions: 395649
Number of successful extensions: 1525
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1522
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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