Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19b20
         (622 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10171| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.57 
SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     29   2.3  
SB_44358| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_11107| Best HMM Match : Plasmodium_HRP (HMM E-Value=10)             29   4.0  
SB_1557| Best HMM Match : Keratin_B2 (HMM E-Value=5)                   29   4.0  
SB_41301| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_48578| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  

>SB_10171| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -3

Query: 455 RRNCTSHSILYANVCNTTMKNSTPQAISTLSLPSTITH--PPN*PNKFTITNIVARN 291
           R N  +++  + ++ NTT  NS P      SLP+T  H  PPN     ++ N    N
Sbjct: 118 RHNSLTNTTRHNSLNNTTRHNSLPNTTRHNSLPNTTRHNSPPNTTRHNSLPNTTRHN 174



 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = -3

Query: 455 RRNCTSHSILYANVCNTTMKNSTPQAISTLSLPSTITHP--PN*PNKFTITNIVARN 291
           R N  +++  + ++ NTT  NS P      SLP+T  H   PN     ++ N    N
Sbjct: 37  RHNSLNNTTRHNSLPNTTRHNSLPNTTRHNSLPNTTRHNSLPNTTRHNSLPNTTRHN 93


>SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1041

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
 Frame = -3

Query: 413 CNTTMKNSTPQAISTLSLPSTITHPPN*PN-KFTITNIVARN-----LPQPQDMSM*SLC 252
           CN  +  S  Q  S L+  S I  PP  PN + ++  ++ R+      P+P         
Sbjct: 693 CNERLVGSPHQGRSPLNRSSLIITPPGSPNEENSMVTVMVRDQGIQACPRP---GWEQPD 749

Query: 251 SDHWNHMRRPSSRNVDIRHSRATVG 177
           S H N M RP SRN  ++   +  G
Sbjct: 750 SPHINQMNRPPSRNNSLQSESSEEG 774


>SB_44358| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -3

Query: 440 SHSILYANVCNTTMKNSTPQAISTLSLPSTITHP--PN*PNKFTITNIVARN 291
           +H+  + ++ NTT  NS P      SLP+T  H   PN     ++TN    N
Sbjct: 14  THTTRHNSLPNTTRHNSLPNTTRHNSLPNTTRHNSLPNTTRHNSLTNTTRHN 65


>SB_11107| Best HMM Match : Plasmodium_HRP (HMM E-Value=10)
          Length = 296

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = -3

Query: 455 RRNCTSHSILYANVCNTTMKNSTPQAISTLSLPSTITHP--PN*PNKFTITNIVARNLP 285
           R N   ++  + +  NTT  NS P      SLP+T  H   PN     ++ N    N P
Sbjct: 131 RHNSLPNTARHKSPTNTTRHNSLPNITRHNSLPNTARHNSLPNTTRHNSLPNTARHNSP 189


>SB_1557| Best HMM Match : Keratin_B2 (HMM E-Value=5)
          Length = 263

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = -1

Query: 562 SVCSLRATARPRTDCALQREPPPTPAVALRSMPNCGEGTVR 440
           S C    T      CA Q  PPP  A  +   PN GE TV+
Sbjct: 114 SCCDPMMTNPCMNPCAPQGSPPPPAAPPIAYNPNPGEITVK 154


>SB_41301| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = -3

Query: 455 RRNCTSHSILYANVCNTTMKNSTPQAISTLSLPSTITHP--PN*PNKFTITNIVARNLP 285
           R N   ++  + ++ NTT  NS P      SLP+T  H   PN     ++ N    N P
Sbjct: 19  RHNSLPNTTRHNSLHNTTRHNSLPNTTRHNSLPNTTRHNSLPNTTRYNSLPNTTRHNSP 77



 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 455 RRNCTSHSILYANVCNTTMKNSTPQAISTLSLPSTITH 342
           R N   ++  Y ++ NTT  NS P      SLP+T  H
Sbjct: 55  RHNSLPNTTRYNSLPNTTRHNSPPNTTRHNSLPNTTRH 92


>SB_48578| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = -3

Query: 455 RRNCTSHSILYANVCNTTMKNSTPQAISTLSLPSTITHP--PN*PNKFTITNIVARN 291
           R N   ++  + ++ NTT  NS P      SLP+T  H   PN     ++ N    N
Sbjct: 28  RNNSLPNTTRHNSLTNTTRHNSLPNTTRHNSLPNTTRHNSLPNTTRHNSLPNTTRHN 84


>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -3

Query: 404 TMKNSTPQAISTLSLPSTITHPPN*PNKFTITNIV-ARNLPQP 279
           T+  +TPQ   T + P+  TH P  P+  T T+    +  P P
Sbjct: 14  TLTKATPQTTPTPTKPTPTTHTPTKPSPTTPTSTAPTQTTPTP 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,229,653
Number of Sequences: 59808
Number of extensions: 450027
Number of successful extensions: 1279
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)