Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19b18
         (396 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...   121   4e-29
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    28   0.46 
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces...    26   1.8  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    25   4.3  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    25   5.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    24   7.4  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    24   9.8  
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    24   9.8  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    24   9.8  

>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score =  121 bits (292), Expect = 4e-29
 Identities = 56/106 (52%), Positives = 69/106 (65%), Gaps = 2/106 (1%)
 Frame = +2

Query: 44  MVNVPKQRRTYXXXXXXXXXXXX--SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXX 217
           MVN+PK R+TY              +QYKK  +   AQG+RRYDRKQ G+GGQ+KP+F  
Sbjct: 1   MVNIPKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHK 60

Query: 218 XXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 355
                  +VLRLEC  CK ++Q+ LKRCKHFELGG+KK KG  IQF
Sbjct: 61  KAKVTKKVVLRLECVSCKYKNQLVLKRCKHFELGGEKKTKGAAIQF 106


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 28.3 bits (60), Expect = 0.46
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 153 PWAACLSLDFLYCDTLCTLWHL 88
           P A  + L +LY DTL + WHL
Sbjct: 679 PLAVAILLHYLYTDTLLSPWHL 700


>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 129

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = -1

Query: 234 LVVFAFFLKMGLD*PP*PCCLRS*RLLPWAACLSLDFLYCDTLCTLWHLHFLQYVLRCFG 55
           L+VF FF+  G         LR  R+L      S+ F +   L TL+H   + + + C G
Sbjct: 40  LLVFGFFMIAGFS-KSVSFFLRKDRMLG-----SISF-FSGLLLTLFHFPIIGFFVECLG 92

Query: 54  TFTIFE 37
            F +F+
Sbjct: 93  FFNLFK 98


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +3

Query: 81  KNVNATKYTRYHSTKSPRKGTLPRVEDVMIVNSRVTVVSPNPSSKRRQKPLRKLCSVLS 257
           K  +A K  R H+  +     +  V        ++ V SPNP S +R+K  R+  S+ S
Sbjct: 241 KEQHAKKPKRKHTRSTVPTSNVEPVSQPQPSPDKI-VSSPNPPSAKREKKKRRKSSMSS 298


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 117 STKSPRKGTLPRVEDVMIVNSRVTVVSPN 203
           ST+ PR  T    E V +++ R+ V++PN
Sbjct: 191 STEQPRMHTFSLSELVPLLSERLYVINPN 219


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 129 PRKGTLPRVEDVMIVNSRVTVVSPNPSS 212
           P+K + P+V  +M      +VV+P+P+S
Sbjct: 620 PQKPSAPQVTRLMAPQDSSSVVTPSPTS 647


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 1   LFLTFVDIVPNELKN 45
           LF TFVD +P+ LKN
Sbjct: 463 LFNTFVDQIPSYLKN 477


>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 294 FNATCDLTLQSAHSRRSTIFLVVFAFFL 211
           +N +C LTL     R   +FL+ F++ L
Sbjct: 236 YNVSCILTLPIYQRRGYGVFLIDFSYLL 263


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 126 SPRKGTLPRVEDVMIVNSRVTVVSPNP 206
           SP +G+LPR     ++ + +++   NP
Sbjct: 735 SPSRGSLPRRPSSALLTNPISITKSNP 761


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,567,310
Number of Sequences: 5004
Number of extensions: 29378
Number of successful extensions: 107
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)