Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19b18
         (396 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0)              128   1e-30
SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026)           62   1e-10
SB_57013| Best HMM Match : Pico_P2A (HMM E-Value=3.2)                  25   2.3  
SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_55326| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_52318| Best HMM Match : Pox_A32 (HMM E-Value=0.066)                 27   4.2  
SB_22849| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               27   4.2  
SB_11815| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.002)             27   4.2  
SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037)                27   5.5  
SB_4035| Best HMM Match : DUF1279 (HMM E-Value=0.15)                   27   5.5  
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)        27   7.3  
SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_42699| Best HMM Match : SIR2 (HMM E-Value=1.6e-12)                  27   7.3  
SB_30079| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09)                 27   7.3  
SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6)                      27   7.3  
SB_46402| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.6  
SB_12592| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.6  

>SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0)
          Length = 113

 Score =  128 bits (310), Expect = 1e-30
 Identities = 62/108 (57%), Positives = 72/108 (66%), Gaps = 2/108 (1%)
 Frame = +2

Query: 38  SKMVNVPKQRRTYXXXXXXXXXXXX--SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIF 211
           S +VNVPKQR+T+              +QYK  K    AQG+RRYDRKQ G+GGQ+KP+F
Sbjct: 6   SPVVNVPKQRKTFCKGKKCRRHTLHKVTQYKTGKASLFAQGKRRYDRKQSGFGGQTKPVF 65

Query: 212 XXXXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 355
                    IVLR+EC  CK R Q+ LKRCKHFELGGDKKRKGQMIQF
Sbjct: 66  HKKAKTTKKIVLRMECTQCKYRKQMPLKRCKHFELGGDKKRKGQMIQF 113


>SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026)
          Length = 39

 Score = 62.5 bits (145), Expect = 1e-10
 Identities = 26/33 (78%), Positives = 28/33 (84%)
 Frame = +2

Query: 239 IVLRLECADCKVRSQVALKRCKHFELGGDKKRK 337
           IVLR+EC  CK R Q+ LKRCKHFELGGDKKRK
Sbjct: 7   IVLRMECTQCKYRKQMPLKRCKHFELGGDKKRK 39


>SB_57013| Best HMM Match : Pico_P2A (HMM E-Value=3.2)
          Length = 474

 Score = 24.6 bits (51), Expect(2) = 2.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 275 RSQVALKRCKHFELGGD 325
           +S++A  RC H  LGGD
Sbjct: 419 QSRIAFPRCAHGPLGGD 435



 Score = 22.2 bits (45), Expect(2) = 2.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 128 SKERHAAQGRRRYDRKQQGYGGQSKPIF 211
           ++ RH  + RRRY +   G   QS+  F
Sbjct: 397 AERRHNGRDRRRYGQPDSGDVRQSRIAF 424


>SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1442

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 251  LECADCKVRSQVALKRCKHFELG 319
            +EC +CK R  +A   C HF+ G
Sbjct: 1113 IECPNCKFRYDLAKGGCMHFKCG 1135


>SB_55326| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1289

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 19/70 (27%), Positives = 32/70 (45%)
 Frame = +3

Query: 27   AERTQKW*TYQNSAGRTAKNVNATKYTRYHSTKSPRKGTLPRVEDVMIVNSRVTVVSPNP 206
            AE   +W T +    + +K + + K  R   T  P       + D+    +R+T VSP  
Sbjct: 1021 AESFHRWLTQRQFCAQYSKELASGKTNREWVTALPIV-----ISDINATKTRMTGVSPKD 1075

Query: 207  SSKRRQKPLR 236
            + K R+ PL+
Sbjct: 1076 AIKLRRVPLK 1085


>SB_52318| Best HMM Match : Pox_A32 (HMM E-Value=0.066)
          Length = 716

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -2

Query: 185 NPAVYDHNVFYPGQRAFPWTF-CTVIPCVLCGIYIFCSTSCA 63
           +P + DH VFYP     P TF  T+ P  +  I ++ ST+ A
Sbjct: 167 HPILNDHGVFYPKALPHPLTFEITLAP--VSDIVVYSSTTPA 206


>SB_22849| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 1359

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 185  NPAVYDHNVFYPGQRAFPWTFCTVIPCVLCGIYIFCSTSCA 63
            +P + DH VFYP     P TF  +    +  I ++ ST+ A
Sbjct: 1172 HPILNDHGVFYPKALPHPLTF-EITLATVSDIVVYSSTTPA 1211


>SB_11815| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.002)
          Length = 1725

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -2

Query: 185  NPAVYDHNVFYPGQRAFPWTF-CTVIPCVLCGIYIFCSTSCA 63
            +P + DH VFYP     P TF  T+ P  +  I ++ ST+ A
Sbjct: 1243 HPILNDHGVFYPKALPHPLTFEITLAP--VSDIVVYSSTTQA 1282


>SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037)
          Length = 303

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 368 LEAFKIGSSVPFSSCHHRAQSACI 297
           +E + +G S+ +  C H   SACI
Sbjct: 261 MEEYAVGDSMKYLPCRHNFHSACI 284


>SB_4035| Best HMM Match : DUF1279 (HMM E-Value=0.15)
          Length = 1575

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +3

Query: 111  YHSTKSPRK-GTLPRVEDV--MIVNSRVTVVSPNPSSKRRQK 227
            Y +   P+K G   RV+++  ++   R T+  PN S  RRQ+
Sbjct: 1011 YEAAWDPKKSGNTERVQELQGVVTTDRQTIDDPNTSESRRQE 1052


>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
          Length = 2122

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +3

Query: 99   KYTRYHS-TKSPRKGTLPRVEDVMI--VNSRVTVVSPNPSSKRRQ 224
            K TRY S T S R    P  ++ +   +NS     SP+PS+KR +
Sbjct: 2061 KSTRYSSRTSSNRDSRTPPADEKIRADINSNEVQSSPSPSTKREE 2105


>SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 931

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = -1

Query: 150 WAACLSLDFLYCDTLCTLWHLHFLQYVLRCFG 55
           W     L F+ C TLC  W +    Y  R  G
Sbjct: 283 WIGAWWLGFVICGTLCIFWSIWLFGYPKRIPG 314


>SB_42699| Best HMM Match : SIR2 (HMM E-Value=1.6e-12)
          Length = 501

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 125 KSKERHAAQGRRRYDRKQQGY 187
           K K+RHA Q    YD+K Q Y
Sbjct: 471 KQKDRHARQLGINYDKKHQNY 491


>SB_30079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 877

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 275 RSQVALKRCKHFELGGDKKR 334
           +S++A  RC H  LGGD +R
Sbjct: 495 QSRIASPRCAHRPLGGDSRR 514


>SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09)
          Length = 321

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 348 IICPFLFLSPPSSKCLHLFNATCDLTLQSAHSR 250
           I+C   F +P  +KCLH F   C L     +S+
Sbjct: 246 IMCRKTFKNPVVTKCLHYFCEACALQHYKKNSK 278


>SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6)
          Length = 399

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -2

Query: 161 VFYPGQRAFPWTFCTVIPCVLCGIYIFCSTSCAVLV 54
           VFYP     P     V+ C+   + + C   C +LV
Sbjct: 105 VFYPPSNGLPVFTLLVMDCLCFTLLVMCYLCCTLLV 140


>SB_46402| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 947

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 275 RSQVALKRCKHFELGGD 325
           RS++A  RC H  LGGD
Sbjct: 504 RSRIAFTRCAHGPLGGD 520


>SB_12592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
 Frame = +3

Query: 51  TYQNSAGRTAKNVNATKYTRYHSTKSPR----KGTLPRVEDV--MIVNSRVTVVSPNPSS 212
           T  +S G   +    T +T     K+ R     G   RV+++  ++   R T+  PN S 
Sbjct: 43  TSTSSRGARTQTTAETSFTTEGRCKAKRLQAVDGVTERVQELQGVVATDRETIDDPNTSE 102

Query: 213 KRRQK 227
            RRQ+
Sbjct: 103 SRRQE 107


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,203,172
Number of Sequences: 59808
Number of extensions: 254448
Number of successful extensions: 1061
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)