Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19b18
(396 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14320.1 68417.m02206 60S ribosomal protein L36a/L44 (RPL36aB) 114 2e-26
At3g23390.1 68416.m02949 60S ribosomal protein L36a/L44 (RPL36aA... 114 2e-26
At3g14050.1 68416.m01773 RelA/SpoT protein, putative (RSH2) near... 29 1.5
At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3) ... 27 3.4
At1g33400.1 68414.m04135 tetratricopeptide repeat (TPR)-containi... 27 3.4
At5g18530.1 68418.m02191 beige/BEACH domain-containing protein c... 27 4.5
At5g60690.1 68418.m07616 homeodomain-leucine zipper protein Revo... 26 7.9
At5g51230.2 68418.m06353 embryonic flower 2 (EMF2) identical to ... 26 7.9
At5g51230.1 68418.m06352 embryonic flower 2 (EMF2) identical to ... 26 7.9
At5g45460.1 68418.m05585 expressed protein 26 7.9
At1g55530.1 68414.m06353 zinc finger (C3HC4-type RING finger) fa... 26 7.9
>At4g14320.1 68417.m02206 60S ribosomal protein L36a/L44 (RPL36aB)
Length = 105
Score = 114 bits (274), Expect = 2e-26
Identities = 55/101 (54%), Positives = 65/101 (64%), Gaps = 2/101 (1%)
Frame = +2
Query: 44 MVNVPKQRRTYXXXXXXXXXXXX--SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXX 217
MVN+PK + TY +QYKK K+ AAQG+RRYDRKQ GYGGQ+KP+F
Sbjct: 1 MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
Query: 218 XXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKG 340
IVLRL+C CK SQ +KRCKHFE+GGDKK KG
Sbjct: 61 KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKG 101
>At3g23390.1 68416.m02949 60S ribosomal protein L36a/L44 (RPL36aA)
similar to ribosomal protein L41 GB:AAA34366 from
[Candida maltosa]
Length = 105
Score = 114 bits (274), Expect = 2e-26
Identities = 55/101 (54%), Positives = 65/101 (64%), Gaps = 2/101 (1%)
Frame = +2
Query: 44 MVNVPKQRRTYXXXXXXXXXXXX--SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXX 217
MVN+PK + TY +QYKK K+ AAQG+RRYDRKQ GYGGQ+KP+F
Sbjct: 1 MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
Query: 218 XXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKG 340
IVLRL+C CK SQ +KRCKHFE+GGDKK KG
Sbjct: 61 KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKG 101
>At3g14050.1 68416.m01773 RelA/SpoT protein, putative (RSH2) nearly
identical to RelA/SpoT homolog RSH2 [Arabidopsis
thaliana] GI:7141306; contains Pfam profiles PF01966: HD
domain, PF04607: Region found in RelA / SpoT proteins
Length = 709
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -1
Query: 333 LFLSPPSSKCLHLFNATCDLTLQSAHSRRST 241
L+ SPPSS C +CDL L S S S+
Sbjct: 9 LYASPPSSVCSTPHQISCDLDLTSRSSSTSS 39
>At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3)
family protein low similarity to Translation initiation
factor IF-3 from [subsp. Schizaphis graminum] {Buchnera
aphidicola} SP|P46243, {Salmonella typhimurium}
SP|P33321; contains Pfam profiles PF05198: Translation
initiation factor IF-3 N-terminal domain, PF00707:
Translation initiation factor IF-3 C-terminal domain
Length = 520
Score = 27.5 bits (58), Expect = 3.4
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +3
Query: 78 AKNVNATKYTRYHSTKSPRKGTLPRVEDVMIVNSRVTVVSPNPSSKR 218
A A R+ P+KG + ++D+ I ++RV SP P S +
Sbjct: 238 ADRKGAVVIVRHAKFGPPKKGGVKLMKDIDIKSARVKEESPKPDSSK 284
>At1g33400.1 68414.m04135 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 798
Score = 27.5 bits (58), Expect = 3.4
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -2
Query: 113 IPCVLCGIYIFCSTSCAV 60
+PC C I ++CS SC +
Sbjct: 275 VPCPSCSIPVYCSESCQI 292
>At5g18530.1 68418.m02191 beige/BEACH domain-containing protein
contains 5 WD-40 repeats (PF00400); contains
Beige/BEACH domain (Pfam PF02138); FACTOR ASSOCIATED
WITH N-SMASE ACTIVATION (FAN) (SP:Q92636) Homo
sapiens;similar to Lipopolysaccharide-responsive and
beige-like anchor protein (CDC4-like protein)
(Beige-like protein) (SP:P50851) [Homo sapiens}
Length = 909
Score = 27.1 bits (57), Expect = 4.5
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = -2
Query: 179 AVYDHNVFYPG--QRAFPWTFCTVIPCVLCGIYIFCS--TSCAVLVRSPFLSS 33
+VY+ N YP QR + WT IP C IFCS S + L P+ SS
Sbjct: 459 SVYEPNE-YPSDMQRLYDWTPDECIPEFYCDPRIFCSLHPSMSDLAVPPWASS 510
>At5g60690.1 68418.m07616 homeodomain-leucine zipper protein
Revoluta (REV) / fascicular fiberless 1 (IFL1) identical
to HD-zip transcription factor Revoluta (GI:9759333)
{Arabidopsis thaliana}; contains Pfam profiles PF01852:
START domain and PF00046: Homeobox domain
Length = 842
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 180 RVTVVSPNPSSKRRQKPLRKLCSVLS 257
RV P PSS RRQ+ +R+ CS+L+
Sbjct: 39 RVYAECPKPSSLRRQQLIRE-CSILA 63
>At5g51230.2 68418.m06353 embryonic flower 2 (EMF2) identical to
embryonic flower 2 [Arabidopsis thaliana] GI:14276050;
supporting cDNA gi|14276049|dbj|AB053171.1|
Length = 626
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 272 VRSQVALKRCKHFELGGDKKRKGQMIQF 355
+R+ + L+RC H+++ KR+ QM F
Sbjct: 60 IRNPLFLQRCLHYKIEAKHKRRIQMTVF 87
>At5g51230.1 68418.m06352 embryonic flower 2 (EMF2) identical to
embryonic flower 2 [Arabidopsis thaliana] GI:14276050;
supporting cDNA gi|14276049|dbj|AB053171.1|
Length = 631
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 272 VRSQVALKRCKHFELGGDKKRKGQMIQF 355
+R+ + L+RC H+++ KR+ QM F
Sbjct: 60 IRNPLFLQRCLHYKIEAKHKRRIQMTVF 87
>At5g45460.1 68418.m05585 expressed protein
Length = 703
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = -1
Query: 114 DTLCTLWHLHFLQ----YVLRCFGTFTIFEFVRHDINKRQKK 1
D C++ H+H + + R G+ +F F+ + KRQK+
Sbjct: 427 DDKCSMVHVHHMLTTPFFFRRWCGSINVFNFLAYATKKRQKR 468
>At1g55530.1 68414.m06353 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 351
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -2
Query: 383 QWSYLLEAFKIGSSVPFSSCHHRAQSACISSMQPVISPC 267
Q S L+ F+IG+ C H+ S C+ + S C
Sbjct: 222 QCSVCLDDFEIGTEAKLMPCTHKFHSDCLLPWLELHSSC 260
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,366,920
Number of Sequences: 28952
Number of extensions: 160171
Number of successful extensions: 453
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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