Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19b17
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|c...    32   0.075
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    30   0.30 
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    28   1.2  
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc...    25   6.5  

>SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 31.9 bits (69), Expect = 0.075
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = -1

Query: 301 VPSLVVSLYPYIGPSFVSTFNFVFSLFAVIFTELSI 194
           + S+V+S  P+ GP F++ F+F  ++F  I   +++
Sbjct: 196 IVSIVISCLPFFGPLFLNVFSFFATIFTFIAAVIAV 231


>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +3

Query: 309 KFKGIPYAKPPVGHLRF 359
           +F GI YAKPPVG LR+
Sbjct: 20  RFTGIRYAKPPVGKLRW 36


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 130 ISSWDQFNTFIKLVANC 180
           ISSW+ FNT++K++  C
Sbjct: 367 ISSWEYFNTWLKIIQLC 383


>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -1

Query: 511 NYRFFWISSGFHHQILMITGPFG 443
           NYRFFW    FH  I +     G
Sbjct: 154 NYRFFWNKYAFHELIELTNKDLG 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,217,616
Number of Sequences: 5004
Number of extensions: 41651
Number of successful extensions: 82
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)