Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19b17
         (613 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40548| Best HMM Match : COesterase (HMM E-Value=3e-21)              37   0.011
SB_23484| Best HMM Match : COesterase (HMM E-Value=0)                  37   0.015
SB_56595| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.020
SB_37257| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.034
SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.045
SB_56819| Best HMM Match : COesterase (HMM E-Value=0)                  34   0.079
SB_32070| Best HMM Match : RVT_1 (HMM E-Value=2.4e-15)                 34   0.079
SB_28537| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.079
SB_9981| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.32 
SB_38136| Best HMM Match : COesterase (HMM E-Value=0)                  31   0.74 
SB_8304| Best HMM Match : PLAT (HMM E-Value=0)                         31   0.97 
SB_25442| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.2  
SB_4859| Best HMM Match : Nucleoplasmin (HMM E-Value=5.1)              29   3.0  
SB_56820| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01)                   27   9.1  

>SB_40548| Best HMM Match : COesterase (HMM E-Value=3e-21)
          Length = 424

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +3

Query: 231 KTKLKVETKEGPIYGYKETTNEGTYCK-FKGIPYAKPPVGHLRFLDSR 371
           K  L V+TK G + G  E T  G   + F+ I YA+ P+G LRF  S+
Sbjct: 48  KEPLIVQTKSGAVEGRLEPTFHGLCTRQFRAIRYAEAPIGDLRFAKSK 95


>SB_23484| Best HMM Match : COesterase (HMM E-Value=0)
          Length = 586

 Score = 36.7 bits (81), Expect = 0.015
 Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
 Frame = +3

Query: 246 VETKEGPIYGY------KETTNEGTYCKFKGIPYAKPPVGHLRF 359
           V TK+G + G       K   N  T  KF G+PYA+PPV +LRF
Sbjct: 24  VRTKQGYVRGLRQQFDAKSEDNVDTVYKFLGVPYAEPPVKNLRF 67


>SB_56595| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 36.3 bits (80), Expect = 0.020
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 246 VETKEGPIYGYKETTNEGTYCK-FKGIPYAKPPVGHLRFLD 365
           +  ++G I G +E    G   + F GIPYA+ PVG LRF D
Sbjct: 12  ITLEQGKIQGMREPVPGGYEVEIFLGIPYARAPVGELRFAD 52


>SB_37257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 741

 Score = 35.5 bits (78), Expect = 0.034
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 225 SEKTKLKVETKEGPIYGYKETTNEGTYCK-FKGIPYAKPPVGHLRF 359
           S    L V+T  G + G       G   + F+ IPYA+PPVG LRF
Sbjct: 34  STSDHLVVQTLAGAVRGRLNPVVHGLQVRQFRAIPYAQPPVGKLRF 79


>SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1659

 Score = 35.1 bits (77), Expect = 0.045
 Identities = 20/53 (37%), Positives = 28/53 (52%)
 Frame = +3

Query: 201  NSVNMTAKSEKTKLKVETKEGPIYGYKETTNEGTYCKFKGIPYAKPPVGHLRF 359
            +S N     E + + + T  G I G   T N   +  FKGIPYAKPP+  +R+
Sbjct: 1022 SSENDENDDEDSSILIATDGGTIRG---TRNSNAWV-FKGIPYAKPPINDMRW 1070


>SB_56819| Best HMM Match : COesterase (HMM E-Value=0)
          Length = 613

 Score = 34.3 bits (75), Expect = 0.079
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +3

Query: 246 VETKEGPIYGYKETTN--EGTYCKFKGIPYAKPPVGHLRFLDSR 371
           V    G + G +E+ +  E     F GIP+A+PP+G LRF+ S+
Sbjct: 32  VHLSVGKLRGIRESVSGTEREAESFYGIPFAEPPIGDLRFVPSK 75


>SB_32070| Best HMM Match : RVT_1 (HMM E-Value=2.4e-15)
          Length = 345

 Score = 34.3 bits (75), Expect = 0.079
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +3

Query: 246 VETKEGPIYGYKETTN--EGTYCKFKGIPYAKPPVGHLRFLDSR 371
           V    G + G +E+ +  E     F GIP+A+PP+G LRF+ S+
Sbjct: 267 VHLSVGKLRGLRESVSGTEREAESFYGIPFAEPPIGDLRFVPSK 310


>SB_28537| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 621

 Score = 34.3 bits (75), Expect = 0.079
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 219 AKSEKTKLKVETKEGPIYGYKETTNEGTYCK-FKGIPYAKPPVGHLRFLDSR 371
           A+S     K    +G +  Y  +       K F G+PYA PP+G LRF+  R
Sbjct: 38  AQSVTANTKYGEIKGSVVSYANSNGRVKSLKTFVGVPYASPPLGKLRFVPPR 89


>SB_9981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 780

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
 Frame = +3

Query: 246 VETKEGPIYGYKET--TNEGT---YCKFKGIPYAKPPVGHLRF 359
           + TK G + G  +T  + +G      KF GIPYA+ P+G LRF
Sbjct: 90  INTKYGKVLGLAQTLASAQGPARKINKFLGIPYAQQPIGDLRF 132


>SB_38136| Best HMM Match : COesterase (HMM E-Value=0)
          Length = 590

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = +3

Query: 225 SEKTKLKVETKEGPIYGYKE--TTNEGTYCK---FKGIPYAKPPVGHLRF 359
           S+  +L V TK G + G        +G   K   F GIP+A PPV  LRF
Sbjct: 24  SQSDELVVSTKYGAVRGVTRHLAAIKGNITKINRFLGIPFASPPVKKLRF 73


>SB_8304| Best HMM Match : PLAT (HMM E-Value=0)
          Length = 1182

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +1

Query: 373 GPSWFLRNVDLNDDLELDSIR*TSRMVL*SSRSDDGILKKSRKIYNFQSLS*SGLAVSCY 552
           GP WFL  V + DD   + +  +  M   ++ +DDG++ +      F   S SGL  + Y
Sbjct: 220 GPGWFLDKVVVEDDSSGEVVEFSCNMWF-ATNADDGLITRELIREGFVEESDSGLQKATY 278

Query: 553 S 555
           +
Sbjct: 279 T 279


>SB_25442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1010

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 183 IFSRIDNSVNMTAKSEKTKLKVETKEGPIYGYKETTNEGTY-CKFKGIP 326
           +F  I  S+    +SEK K    T  GP  G ++ TN  T+ C FK +P
Sbjct: 669 LFVWITVSLRFVPESEKQKTSASTTPGP-NGNQDKTNIQTFSCYFKDLP 716


>SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = +3

Query: 273 GYKETTNEGTYCKFKGIP----YAKPPVGHLRFLDSRRTIMVP 389
           G + T  E  + K KGIP    + KPP GHL        +++P
Sbjct: 92  GLERTLAETHFPKIKGIPPKHVFPKPPAGHLSMSKPHTLLLLP 134


>SB_4859| Best HMM Match : Nucleoplasmin (HMM E-Value=5.1)
          Length = 187

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
 Frame = +1

Query: 274 DTKRLPMKAHTVNLKAFHM---QNHLSDIYDS---WIAVGPSWF-LRNVDLNDDL 417
           DTK L ++AH  NL  FHM    N +  ++DS   + A+  +W  + ++   DDL
Sbjct: 72  DTKTLFLRAHLNNLVIFHMSLKDNEIKWLFDSGADYKAIHGAWIGMEHIAEGDDL 126


>SB_56820| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +3

Query: 312 FKGIPYAKPPVGHLRFLD 365
           F  IPYA+ PVG LRF D
Sbjct: 14  FLEIPYARAPVGELRFAD 31


>SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1293

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 286  LPMKAHTVNLKAFHMQNHLSDIYDSW 363
            +P K HT+ ++  +  NH+   YD W
Sbjct: 1192 IPQKIHTMTVQHLNYTNHMLYAYDLW 1217


>SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01)
          Length = 590

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 401 ISMTTWSLTQSGRLPEWSCNHQDLMME 481
           +S   W LT+SGR  +W   HQ  +++
Sbjct: 478 VSAVLWDLTKSGRDFQWHTEHQAAVVQ 504


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,696,993
Number of Sequences: 59808
Number of extensions: 286092
Number of successful extensions: 466
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)