Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19b17
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    41   1e-05
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    41   1e-05
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    39   3e-05
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           39   3e-05
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.5  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 40.7 bits (91), Expect = 1e-05
 Identities = 19/40 (47%), Positives = 24/40 (60%)
 Frame = +3

Query: 240 LKVETKEGPIYGYKETTNEGTYCKFKGIPYAKPPVGHLRF 359
           L VET  G + G+  T  +     F GIP+AKPP+G LRF
Sbjct: 38  LVVETTSGLVRGFPRTVLDKEVHVFYGIPFAKPPIGPLRF 77


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 40.7 bits (91), Expect = 1e-05
 Identities = 19/40 (47%), Positives = 24/40 (60%)
 Frame = +3

Query: 240 LKVETKEGPIYGYKETTNEGTYCKFKGIPYAKPPVGHLRF 359
           L VET  G + G+  T  +     F GIP+AKPP+G LRF
Sbjct: 38  LVVETTSGLVRGFPRTVLDKEVHVFYGIPFAKPPIGPLRF 77


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 39.1 bits (87), Expect = 3e-05
 Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +3

Query: 243 KVETKEGPIYGYKETTNEGT-YCKFKGIPYAKPPVGHLRF 359
           +V+T  G I GY + +  G  Y  ++GIPYA PPVG  RF
Sbjct: 24  RVKTPLGAIKGYYKISGNGKQYEAYEGIPYALPPVGKFRF 63


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 39.1 bits (87), Expect = 3e-05
 Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +3

Query: 243 KVETKEGPIYGYKETTNEGT-YCKFKGIPYAKPPVGHLRF 359
           +V+T  G I GY + +  G  Y  ++GIPYA PPVG  RF
Sbjct: 24  RVKTPLGAIKGYYKISGNGKQYEAYEGIPYALPPVGKFRF 63


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = +1

Query: 340 LSDIYDSWIAVGPSWFLRNV 399
           L ++ + W+ + P+W L N+
Sbjct: 495 LIELIEHWMPLLPNWILENI 514


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 6/25 (24%), Positives = 14/25 (56%)
 Frame = +2

Query: 401 ISMTTWSLTQSGRLPEWSCNHQDLM 475
           + +  W +   G  P W+ ++QD++
Sbjct: 824 MGIVCWEVMSYGERPYWNWSNQDVI 848


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
 Frame = -3

Query: 338 WFCIWNAFKFT-VCAFIGSLF 279
           +FCIW   K+T    +  SLF
Sbjct: 221 YFCIWKGVKWTGKVVYFTSLF 241


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
 Frame = -3

Query: 338 WFCIWNAFKFT-VCAFIGSLF 279
           +FCIW   K+T    +  SLF
Sbjct: 274 YFCIWKGVKWTGKVVYFTSLF 294


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 189 SRIDNSVNMTAKSEKTKLKVETKEGPIYG 275
           S +D SV   A     ++K     GPI+G
Sbjct: 44  SNLDMSVLECADRSAPRVKKTASAGPIFG 72


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 189 SRIDNSVNMTAKSEKTKLKVETKEGPIYG 275
           S +D SV   A     ++K     GPI+G
Sbjct: 134 SNLDMSVLECADRSAPRVKKTASAGPIFG 162


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,962
Number of Sequences: 438
Number of extensions: 2912
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)