Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19b17
         (613 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g70340.1 68414.m08092 expressed protein                             33   0.20 
At2g41630.1 68415.m05144 transcription initiation factor IIB-1 /...    29   3.2  
At5g28930.1 68418.m03578 hypothetical protein various predicted ...    28   5.6  
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d...    27   7.4  
At5g62310.1 68418.m07822 incomplete root hair elongation (IRE) /...    27   9.8  

>At1g70340.1 68414.m08092 expressed protein
          Length = 510

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
 Frame = +3

Query: 330 AKPPVGHLRFLDSRRTIMVPKER-----GSQ*RPGA*LNQVDFPNGPVIIK 467
           AKP  G    L +  T++VPKER     GS+ R G+    VDF + P ++K
Sbjct: 103 AKPIPGRHPLLGTPETLVVPKERTDQEIGSKPRRGSWGQNVDFSSSPFVVK 153


>At2g41630.1 68415.m05144 transcription initiation factor IIB-1 /
           general transcription factor TFIIB-1 (TFIIB1) identical
           to transcription initiation factor IIB-1 (TFIIB1)
           SP:P48512 from [Arabidopsis thaliana]
          Length = 312

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +1

Query: 274 DTKRLPMKAHTVNLKAFHMQNHLSDIYDSWIAVGPSWFLRNVDLND 411
           D K L   +H   +    ++N   D+Y     + PSW+ +  DL +
Sbjct: 263 DKKTLKDISHATGVAEGTIRNSYKDLYPHLSKIAPSWYAKEEDLKN 308


>At5g28930.1 68418.m03578 hypothetical protein various predicted
           proteins, Arabidopsis thaliana
          Length = 509

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 262 PSFVSTFNFVFSLFAVIFTELSIRLK 185
           P   S F+FVFSLF+     L +RLK
Sbjct: 482 PQVSSPFDFVFSLFSSYMLMLPVRLK 507


>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam
           domain PF04931: DNA polymerase V
          Length = 1306

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 379 MVRRLSKNRRCPTGGFAYGMPLNLQYVPSL-VVSLYPYIGPS 257
           ++R +S +R C   GFA G+ L +  + S+ V SL   I  S
Sbjct: 193 LIRGVSSSRECARQGFALGLTLPVSVISSINVESLLNLIADS 234


>At5g62310.1 68418.m07822 incomplete root hair elongation (IRE) /
           protein kinase, putative nearly identical to IRE
           (incomplete root hair elongation) [Arabidopsis thaliana]
           gi|6729346|dbj|BAA89783
          Length = 1168

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
 Frame = +1

Query: 283 RLPMKAHTVNLKAFHMQNHLSDIYDSWI--------AVGPSWFLRNVDLNDDLELDSIR* 438
           R  +K   VNL+   +   L  I +SW         AV  S  L N    +DL+  S R 
Sbjct: 512 RCDLKGINVNLRLERVAESLEKILESWTPKSSVTPRAVADSARLSNSSRQEDLDEISQRC 571

Query: 439 TSRMVL*SSRSDDGILKKSRKIYNFQSLS*SGLAVSCYSSYSVPAPCT 582
           +  M+    RS +        I N  S++ +G   S   S + P+P T
Sbjct: 572 SDDMLDCVPRSQNTFSLDELNILNEMSMT-NGTKDSSAGSLTPPSPAT 618


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,128,947
Number of Sequences: 28952
Number of extensions: 204980
Number of successful extensions: 401
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)