Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19b15
(618 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S... 30 0.23
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 29 0.41
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe... 27 2.9
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 27 2.9
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 27 2.9
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 26 3.8
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 26 5.0
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 26 5.0
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 26 5.0
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 25 6.6
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p... 25 6.6
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 6.6
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 25 8.8
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 25 8.8
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 25 8.8
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 8.8
>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 609
Score = 30.3 bits (65), Expect = 0.23
Identities = 22/79 (27%), Positives = 42/79 (53%)
Frame = +1
Query: 172 FTPIEDSAGLVFERMYGLRHHTDERFVFVKKFNFASVLQELNNIKSKIELYEAQVSTCKN 351
+T +++ L+FER +R D+ V V KF+F S LQE+ ++ +K + + + +N
Sbjct: 264 YTNVQNEYELMFERDTEIRKAEDQTAVPVAKFSFVS-LQEVGDV-AKDAVIDV-IGVLQN 320
Query: 352 VRQIKQNRSSNIKTRIEKQ 408
V ++Q S +K+
Sbjct: 321 VGPVQQITSRATSRGFDKR 339
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 29.5 bits (63), Expect = 0.41
Identities = 23/76 (30%), Positives = 36/76 (47%)
Frame = +1
Query: 328 AQVSTCKNVRQIKQNRSSNIKTRIEKQLQFLTPLNKNFITYSVEDSISSNEVLDNIDLEY 507
A S N ++ ++ S + + E Q L L FIT S+ DSI E + D
Sbjct: 559 ANESISSNHEKLMESESDRLSKKWENP-QLLAQLKSRFITGSLLDSIEGQEEVSQDD--- 614
Query: 508 DDGVDFDVYDEYEPSS 555
++G DF+ ++ E SS
Sbjct: 615 EEG-DFEDLEDEENSS 629
>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 26.6 bits (56), Expect = 2.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 163 RITFTPIEDSAGLVFERMYGLRHHTDER 246
RI F P+ED + +VF ++ ++ DE+
Sbjct: 290 RIVFRPVEDHSHIVFAQLTHYKNKKDEK 317
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 26.6 bits (56), Expect = 2.9
Identities = 21/81 (25%), Positives = 35/81 (43%)
Frame = +1
Query: 190 SAGLVFERMYGLRHHTDERFVFVKKFNFASVLQELNNIKSKIELYEAQVSTCKNVRQIKQ 369
S LVF YG R T + + S E++ +K K E AQ+S +N+ Q
Sbjct: 592 SIHLVFRSAYGDREITRRTDPLPSRSIYFSENVEMDLVKRKEEQLNAQLSQLENL----Q 647
Query: 370 NRSSNIKTRIEKQLQFLTPLN 432
N ++ ++ + L+ N
Sbjct: 648 NEERKLQEKVNEHESLLSRTN 668
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 26.6 bits (56), Expect = 2.9
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = +1
Query: 214 MYGLRHHTDERFVFVKKFNFASVLQELNNIKSKIELYEAQVSTCKNVRQIKQNRSSNIKT 393
MY + H TD + V NF + L+ +E + +++ +++ KQ+ + N
Sbjct: 686 MYIVTHETDWKVVQYILINFTNQLRNTKMFTKTVEALQLLLNSLRDIINGKQSLNINFSD 745
Query: 394 --RIEKQLQFLTPLNKNFITY 450
RIE L L+ + + Y
Sbjct: 746 FFRIEDLLVSLSKILSVLMVY 766
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +1
Query: 352 VRQIKQNRSSNIKTRIEKQLQFLTPLNKNFITYSVEDSISSNEVLDNIDLEYDDGV 519
+R++K+N S + +IEK++ + + ++ IS E+L+ L DD V
Sbjct: 1069 LRRVKKNVQSELGEKIEKEVYCDLTQRQKILYQALRRQISIAELLEKAILGGDDTV 1124
>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
cancers-1 homolog 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 676
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 17 YVSS*YISRTCWLANSVNIRRLSWTV*SCW 106
+V++ +I T W NS N RR S + S W
Sbjct: 247 FVNTGFIDSTNWFLNSFNQRRNSLQLYSSW 276
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Frame = +2
Query: 452 LW-KTAFQATKCWTTSIWNMTTALI 523
LW + A TK W T IWN L+
Sbjct: 666 LWNENAIMGTKRWLTKIWNCVHQLL 690
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 45 HVGLLIQSISDVYHGRCKVAGDVRANNFVIDD 140
+ L++ SI D HGR + D++ N ++DD
Sbjct: 203 YAALIVDSI-DYMHGRGVIHRDLKPENILLDD 233
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 25.4 bits (53), Expect = 6.6
Identities = 19/76 (25%), Positives = 39/76 (51%)
Frame = +1
Query: 286 QELNNIKSKIELYEAQVSTCKNVRQIKQNRSSNIKTRIEKQLQFLTPLNKNFITYSVEDS 465
+EL ++ K +LY+ Q + K + + +NIK+ + K+L+ +N S++
Sbjct: 1093 KELESLNDKDQLYQLQATKNKELEAKVKECLNNIKS-LTKELENKEEKCQNLSDASLK-Y 1150
Query: 466 ISSNEVLDNIDLEYDD 513
I E+ +N+ L+ D
Sbjct: 1151 IELQEIHENLLLKVSD 1166
>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 669
Score = 25.4 bits (53), Expect = 6.6
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +1
Query: 226 RHHTDERFVFVKKFN-FASVLQELNNI 303
R T+ERF+F K N F S++Q NI
Sbjct: 254 RSETEERFLFTKTCNVFRSLIQIQKNI 280
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 6.6
Identities = 21/86 (24%), Positives = 42/86 (48%)
Frame = +2
Query: 290 SSIISNLKLNYMKRKFRLAKTSDK*NKTDRVTSKPALKSSCSF*RRLTKISSHTLWKTAF 469
S+I+S+ ++ + A S + T+ T +L S S R ++ S++ + T+F
Sbjct: 758 SAIVSSTTVSNISSNLPSATASSQSQLTNSSTLATSLYLSSSSSRTISTSSTNE-YNTSF 816
Query: 470 QATKCWTTSIWNMTTALILTFTMNTN 547
A +T+ + TT+L +N+N
Sbjct: 817 HAPTVSSTTSSSSTTSLAANKGVNSN 842
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 25.0 bits (52), Expect = 8.8
Identities = 20/80 (25%), Positives = 37/80 (46%)
Frame = +1
Query: 364 KQNRSSNIKTRIEKQLQFLTPLNKNFITYSVEDSISSNEVLDNIDLEYDDGVDFDVYDEY 543
K++ N T + F +PL + T S S SN+ LD + + ++ F+ E+
Sbjct: 225 KRDSEINAVTAVSADGSF-SPLTE---TLSSTISTLSNDSLDGLSSQKNEFTGFNSNSEW 280
Query: 544 EPSSHWSNMTVSDAKALLQN 603
P+ + SDA +++ N
Sbjct: 281 IPNDTVDYICNSDASSVVSN 300
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.0 bits (52), Expect = 8.8
Identities = 17/79 (21%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +1
Query: 280 VLQELNNIKSKIELYEAQVSTCK-NVRQIKQNRSSNIKTRIEKQLQFLTPLNKNFITYSV 456
+L+E K+ L Q+ + +++Q +N SN+ + E Q++ L ++ +T S
Sbjct: 524 LLREQTQDSQKLRLLVEQLELERQDLKQAGENHYSNLSSDYETQIKSL----ESSLTNSQ 579
Query: 457 EDSISSNEVLDNIDLEYDD 513
+ +S E ++ ++ + D+
Sbjct: 580 AECVSFQEKINELNSQIDE 598
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 457 EDSISSNEVLDNIDLEYDDGVDFDVYDEYEPS 552
ED I S E D E D+G+D + ++ +PS
Sbjct: 40 EDEIESEEEYIEADGEKDNGMDEEEQNDAQPS 71
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +1
Query: 139 TNTVVGRDRITFTPIEDSAGLVFERMYGLRHHTDERFVFVKKFNFASVLQEL 294
+ T++GR IT PI+ + + Y H+ + KF+++ L++L
Sbjct: 25 SQTIIGRTDITVNPIDSNLQKIVLDCYQAEIHSVYVNGDLTKFSYSDALKKL 76
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,335,794
Number of Sequences: 5004
Number of extensions: 43892
Number of successful extensions: 178
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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