Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19b15
(618 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 33 0.14
02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657 29 2.2
11_06_0709 - 26487235-26487423,26488003-26488081,26488164-26488375 29 3.9
03_02_1025 + 13289146-13289586,13291882-13292087,13292174-132923... 28 5.2
11_03_0181 - 11301759-11301838,11302294-11303095 28 6.8
06_01_0194 + 1503350-1503554,1504399-1504490,1504835-1504935,150... 28 6.8
06_02_0211 - 13043968-13044646,13044752-13045037,13045903-130459... 27 9.0
05_04_0333 + 20333243-20333329,20335048-20335110,20335276-203353... 27 9.0
05_03_0407 + 13582595-13582681,13583067-13583129,13583289-135833... 27 9.0
>01_06_0124 - 26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 33.5 bits (73), Expect = 0.14
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +1
Query: 286 QELNNIKSKIELYEAQVSTCKNVR-QIKQNRSSNIKTRIEKQLQFLTPLNKNFITYSVED 462
+E+ ++ KI+ Y Q+++ + QIK N S T +++ Q + NK+F +S
Sbjct: 1342 REIQYLEQKIQKYSGQINSLEETLVQIKGNAESGTSTLVDQLDQLESHFNKSFSHFSARS 1401
Query: 463 SISSNEV 483
S E+
Sbjct: 1402 FACSEEL 1408
>02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657
Length = 1136
Score = 29.5 bits (63), Expect = 2.2
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Frame = +1
Query: 295 NNIKSKIELYEAQVSTCKNVRQIKQNRSSNIKTRIEKQLQFLTPLN---KNFITYSVEDS 465
NN++ + + +S+ V ++QNR S +LQ LT L+ N I+ S+ DS
Sbjct: 279 NNLEGTVPAWLGNLSSLVFV-SLQQNRLSGHIPESLGRLQMLTSLDLSQNNLISGSIPDS 337
Query: 466 ISSNEVLDNIDLEYD 510
+ + L ++ L+Y+
Sbjct: 338 LGNLGALSSLRLDYN 352
>11_06_0709 - 26487235-26487423,26488003-26488081,26488164-26488375
Length = 159
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 499 LEYDDGVDFDVYDEYEPSSHWSNMTVSDAKALL 597
+E+D D + ++ PSS MTV D ALL
Sbjct: 104 IEWDSERDLPIVPQWTPSSRTRTMTVGDRHALL 136
>03_02_1025 +
13289146-13289586,13291882-13292087,13292174-13292323,
13292412-13292545,13292843-13292949,13293031-13293137,
13293581-13293686,13294098-13294217,13294318-13294474,
13295163-13295254,13295338-13295582,13295668-13296268,
13296362-13296457,13296541-13296794,13297622-13297715,
13299138-13299188
Length = 986
Score = 28.3 bits (60), Expect = 5.2
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +1
Query: 376 SSNIKTRIEKQ-LQFL-TPLNKNFITYSVEDSISSNEVLDNIDLEYDDGVDFDVYDEYEP 549
SSN K +E++ LQF TP N + V ++ +L +D E DD V + E
Sbjct: 513 SSNDKVAVEQEELQFASTPGNSGQGKFQVGFLLNRQTIL--VDTENDDSVSAVIQQAIEK 570
Query: 550 SSHW 561
+++W
Sbjct: 571 TNYW 574
>11_03_0181 - 11301759-11301838,11302294-11303095
Length = 293
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Frame = +2
Query: 464 AFQATKCWTTSIWNMT---TALILTF--TMNTNRPRI 559
AF KCWT+ +W+ T T L+ T+ T +T+ R+
Sbjct: 229 AFPHVKCWTSPVWSATSRPTVLLSTWQVTCSTSSHRV 265
>06_01_0194 +
1503350-1503554,1504399-1504490,1504835-1504935,
1506186-1506276,1506616-1506674,1506764-1506884,
1506959-1507027,1507321-1507373,1507688-1507796,
1507895-1508065,1508148-1508306,1508561-1508650,
1508751-1508933,1509837-1510027,1510340-1510787
Length = 713
Score = 27.9 bits (59), Expect = 6.8
Identities = 32/149 (21%), Positives = 67/149 (44%)
Frame = +1
Query: 160 DRITFTPIEDSAGLVFERMYGLRHHTDERFVFVKKFNFASVLQELNNIKSKIELYEAQVS 339
D +T E + +V+E L +R+ K + V ++ K++LY+ ++
Sbjct: 354 DNLTEEMEEKTENIVYEDFKFLTKDEMDRYDLSKYIDQGLVRAHMHGYVMKLQLYKKLLA 413
Query: 340 TCKNVRQIKQNRSSNIKTRIEKQLQFLTPLNKNFITYSVEDSISSNEVLDNIDLEYDDGV 519
T + Q + + +IE+Q K+ IT V+ + +++DNI L+ ++ +
Sbjct: 414 TSAVDPENIQEKVK--QKKIEEQ-------RKSRITQVVKIPKVNRQIMDNI-LKEEEEM 463
Query: 520 DFDVYDEYEPSSHWSNMTVSDAKALLQNP 606
D D+ ++ + + KALL +P
Sbjct: 464 DADLENDEKSGIKKKKKKLEMNKALLTDP 492
>06_02_0211 -
13043968-13044646,13044752-13045037,13045903-13045979,
13046039-13046139,13046348-13046412,13048296-13048581
Length = 497
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 484 LDNIDLEYDDGVDFDVY-DEYEPSSHWSNMTVSDAKALLQNPP 609
+D + E ++ VD+ + E EP + T +DA A LQ PP
Sbjct: 10 VDEEEEEEEEAVDYSPHRSELEPEPEPESETDADADAALQPPP 52
>05_04_0333 +
20333243-20333329,20335048-20335110,20335276-20335359,
20335720-20335827,20335969-20336141,20337135-20337246,
20337468-20337548,20337635-20337697,20337779-20337880,
20338070-20338194,20338317-20338527,20338625-20338699,
20338990-20339043
Length = 445
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 439 FITYSVEDSISSNEVLDNIDLEYD-DGVDFDVYDEYEP 549
F++ E +E+ IDL D + FD+YD YEP
Sbjct: 353 FVSTEAETDHPESELKPGIDLLGQVDELFFDIYDRYEP 390
>05_03_0407 +
13582595-13582681,13583067-13583129,13583289-13583372,
13583757-13583864,13584018-13584190,13585190-13585301,
13585424-13585504,13585611-13585673,13585764-13585865,
13586063-13586187,13586316-13586526,13586614-13586688,
13586950-13587003
Length = 445
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 439 FITYSVEDSISSNEVLDNIDLEYD-DGVDFDVYDEYEP 549
F++ E +E+ IDL D + FD+YD YEP
Sbjct: 353 FVSTEAETDNPQSELKPGIDLLGQVDELFFDIYDRYEP 390
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,441,449
Number of Sequences: 37544
Number of extensions: 256201
Number of successful extensions: 694
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -