Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19b15
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g07190.1 68416.m00857 expressed protein                             32   0.35 
At1g61100.1 68414.m06883 disease resistance protein (TIR class),...    31   0.61 
At3g16220.1 68416.m02047 expressed protein similar to CGI-18 pro...    29   3.3  
At5g53980.1 68418.m06715 homeobox-leucine zipper family protein ...    28   4.3  
At5g34960.1 68418.m04125 hypothetical protein includes At5g34960...    28   4.3  
At3g25560.2 68416.m03179 protein kinase family protein contains ...    28   4.3  
At1g17665.1 68414.m02187 expressed protein                             28   4.3  
At3g06130.1 68416.m00704 heavy-metal-associated domain-containin...    28   5.7  
At1g65070.1 68414.m07377 DNA mismatch repair MutS family protein...    28   5.7  
At5g13390.1 68418.m01542 expressed protein                             27   7.5  
At4g10390.1 68417.m01705 protein kinase family protein contains ...    27   7.5  
At1g67170.1 68414.m07641 expressed protein similar to enterophil...    27   7.5  
At1g07390.1 68414.m00788 leucine-rich repeat family protein cont...    27   7.5  
At5g65860.1 68418.m08289 ankyrin repeat family protein contains ...    27   10.0 
At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50...    27   10.0 
At2g29310.1 68415.m03560 tropinone reductase, putative / tropine...    27   10.0 

>At3g07190.1 68416.m00857 expressed protein 
          Length = 220

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
 Frame = +1

Query: 82  IMDGVKLLGTCALIILLSTTNTVVGRDRITFTPIEDSAGLVFERMYGLRHHTDERFVFVK 261
           +M+ +K+    A +  +S  + V+ R  +    +     L F  +    HH  E+ + ++
Sbjct: 61  LMNIIKIQNKGAKLGTMSPMDQVLWRTHLLEASLMGVV-LFFGFIIDRTHHYLEKLITLR 119

Query: 262 KFNFASVLQELNNI-KSKIELYEAQVSTCKNVRQIKQNR---SSNIKTRIEKQ 408
             N  S   EL  + K +IEL E +  T K ++Q+K+     S N+K ++EK+
Sbjct: 120 S-NVGSSKGELEELRKERIELKEKEEKTSKEIKQLKEKLSCVSENLK-KLEKE 170


>At1g61100.1 68414.m06883 disease resistance protein (TIR class),
           putative domain signature TIR exists, suggestive of a
           disease resistance protein.
          Length = 808

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 340 TCKNVRQIKQNRSSNIKTRIEKQLQFLTPLNKN 438
           T KN R+ K+NR  + KT I + + ++TP  +N
Sbjct: 378 TSKNSRRSKKNRKKSSKTVIIRNINYITPEGRN 410


>At3g16220.1 68416.m02047 expressed protein similar to CGI-18
           protein GB:AAD27727 [Homo sapiens]
          Length = 257

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +1

Query: 247 FVFVKKFNFASVLQELNNIKSKIELYEAQVSTCKNVRQIKQNRSSNIKTR 396
           FV  K F+   V+ +L N +S ++      S   NVRQ  +NR   I+ R
Sbjct: 86  FVTPKTFHLTVVMLKLENNESVVKAQNILQSIFSNVRQALKNRPVFIRLR 135


>At5g53980.1 68418.m06715 homeobox-leucine zipper family protein
           contains Pfam PF00046: Homeobox domain; similar to
           homeobox protein PpHB5 (GI:7415622) [Physcomitrella
           patens]
          Length = 156

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
 Frame = +1

Query: 298 NIKSKIELYEAQVSTCKNVRQIKQNRSSNIKTRIEKQLQFLTPLNKN----FITYSVEDS 465
           N +++ +    +V  C    Q K   + + K ++E Q+QFL    K        ++ +DS
Sbjct: 58  NKRARFKTQSLEVQHC--TLQSKHEAALSDKAKLEHQVQFLQDELKRARNQLALFTNQDS 115

Query: 466 ISSNEVLDNIDLEYDDG-VDFD-VYDEYEPSSHWSNMT 573
              N  L + D ++DD  V FD +Y  +  + H S+ T
Sbjct: 116 PVDNSNLGSCDEDHDDQVVVFDELYACFVSNGHGSSST 153


>At5g34960.1 68418.m04125 hypothetical protein includes At5g34960,
           At2g14450, At1g35920
          Length = 1033

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = +1

Query: 352 VRQIKQNRSSNIKTRIEKQLQFLTPLNKNFITYSVEDSISSNEVLDNIDL 501
           V +++ NR SN+K + E+  Q LTP  +  +   + +++ +N  LD I L
Sbjct: 627 VEELRYNRESNLKEKHEEWKQMLTPEQRG-VYNEITEAVFNN--LDQIVL 673


>At3g25560.2 68416.m03179 protein kinase family protein contains
           Prosite:PS00108: Serine/Threonine protein kinases
           active-site signature and PS00107: Protein kinases
           ATP-binding region signature
          Length = 636

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
 Frame = +1

Query: 268 NFASVLQELNNIKSKIELYEAQVSTCKNVRQIKQNRSSNIKTRIE--KQLQFLTPLNKNF 441
           N  +VL + N I   I     ++   K +     N +  I   +   K LQ+   +N N 
Sbjct: 106 NLQTVLLQNNYITGNIPHEIGKLMKLKTLDLSTNNFTGQIPFTLSYSKNLQYFRRVNNNS 165

Query: 442 ITYSVEDSISSNEVLDNIDLEYDD 513
           +T ++  S+++   L  +DL Y++
Sbjct: 166 LTGTIPSSLANMTQLTFLDLSYNN 189


>At1g17665.1 68414.m02187 expressed protein
          Length = 338

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 2/135 (1%)
 Frame = +1

Query: 166 ITFTPIEDSAGLVFERMYGLRHHTDERFVFVKKFNFASVLQELNNIKSKIELYEAQVSTC 345
           +T   + + A  + E    L+H ++   V  +KF+    L      +S  +    Q+   
Sbjct: 200 LTLAQVGEFANCLIEAKNELQHKSE---VIKRKFSITKALL-FKADRSSFDRLRQQIYKL 255

Query: 346 KNVRQIKQNRSSNIKTRIEKQLQFLTPLNKNF--ITYSVEDSISSNEVLDNIDLEYDDGV 519
           + + Q +    + +   +++QL+ L+P  K    I+ S+E    S+  LDN D E+ D  
Sbjct: 256 E-MEQKRVEEDALVYNWLQQQLK-LSPAYKKVLEISASMELKDKSSTELDNPDDEFSDIS 313

Query: 520 DFDVYDEYEPSSHWS 564
             ++ ++ +  S WS
Sbjct: 314 FEELLEQEKKDSFWS 328


>At3g06130.1 68416.m00704 heavy-metal-associated domain-containing
           protein contains Pfam heavy metal associated domain
           PF00403
          Length = 473

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
 Frame = +1

Query: 394 RIEKQLQFLTPLNKN----FITYSVEDSISSNEVLDNIDLEYDDGVDFDVYDEYE----P 549
           ++  QL+   P+NKN     + + V +    ++  D  D E+ D  D +  DE++    P
Sbjct: 162 KLPPQLKGSVPVNKNQNQKGVKFDVPEDDDDDDFSDEFDDEFTDDDDDEFDDEFDDLPLP 221

Query: 550 SSHWS-NMT-VSDAKALLQNPPKD 615
           S+    NMT + +A+ ++ N  K+
Sbjct: 222 SNKMKPNMTMMPNAQQMMMNAQKN 245


>At1g65070.1 68414.m07377 DNA mismatch repair MutS family protein
           contains Pfam profile PF00488: MutS domain V
          Length = 857

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +1

Query: 229 HHTDERFVFVKKFNFASVLQELNNIKSKIELYEAQVSTCKNVRQIKQNRSSNIKT 393
           H  D+R   + K     V ++LN+ KSK+E   A+  +   + Q  Q  S  +KT
Sbjct: 631 HDLDKRERALLKKETQKVQEDLNSAKSKMERLVAEFESQLEITQADQYNSLILKT 685


>At5g13390.1 68418.m01542 expressed protein 
          Length = 1123

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 115 ALIILLSTTNTVVGRDRITFTPIEDSAGLVFERMYGLRHHTDERFVFV 258
           AL +++S+   +V    + FTP+   AGL F R +  +      F FV
Sbjct: 389 ALSVIVSSAGAIVVGFPVLFTPLPAVAGLYFARFF-TKKSVPSYFAFV 435


>At4g10390.1 68417.m01705 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 342

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = +3

Query: 57  LIQSISDVYHGRCK---VAGDVRANNFVIDDEYSCR 155
           L+Q+I  + H +C    V GD++++N ++D  + C+
Sbjct: 146 LVQAIEHI-HEKCSPQIVHGDIKSSNVLLDKNFDCK 180


>At1g67170.1 68414.m07641 expressed protein similar to
           enterophilin-2L (GI:12718845) [Cavia porcellus]; similar
           to Hyaluronan mediated motility receptor (Intracellular
           hyaluronic acid binding protein) (Receptor for
           hyaluronan-mediated motility) (CD168 antigen)
           (Swiss-Prot:O75330) [Homo sapiens]
          Length = 359

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
 Frame = +1

Query: 286 QELNNIKSKIELYEAQVSTCKNVRQIKQNRSSNI---KTRIEKQLQFLTPLNKNFITYSV 456
           QEL   +S ++   A +S  +N+RQ  Q   +     K      L+ L  + KN++T + 
Sbjct: 165 QELQKSRSDVQQIPALMSELENLRQEYQQCRATYDYEKKFYNDHLESLQAMEKNYMTMAR 224

Query: 457 EDSISSNEVLDNIDLEYDDGVDF--DVYDEYEPSSHWS 564
           E      ++++N + +   G  +  ++  E + S H S
Sbjct: 225 EVEKLQAQLMNNANSDRRAGGPYGNNINAEIDASGHQS 262


>At1g07390.1 68414.m00788 leucine-rich repeat family protein contains
            leucine rich-repeat (LRR) domains Pfam:PF00560,
            INTERPRO:IPR001611; contains similarity to Hcr2-5D
            [Lycopersicon esculentum] gi|3894393|gb|AAC78596
          Length = 976

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
 Frame = +1

Query: 304  KSKIELYEAQVSTCKNVRQIKQNR-SSNIKTRIEKQLQFLTPLN--KNFITYSVEDSISS 474
            KS+ E Y+  +    +   +  N  S  I   I   LQ +  LN   N +T S+ DSIS 
Sbjct: 797  KSRYEAYQGDILRYMHGLDLSSNELSGEIPIEIG-DLQNIRSLNLSSNRLTGSIPDSISK 855

Query: 475  NEVLDNIDL 501
             + L+++DL
Sbjct: 856  LKGLESLDL 864


>At5g65860.1 68418.m08289 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 346

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 478 EVLDNIDLEYDDGVDFDVYDEY 543
           +VLD +D    DG+ FD Y EY
Sbjct: 234 DVLDKLDDNSFDGIFFDTYGEY 255


>At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50)
            identical to DNA repair-recombination protein GI:7110148
            from [Arabidopsis thaliana]
          Length = 1316

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +1

Query: 280  VLQELNNIKSKIELYEAQVSTCKNVRQIKQNRSSNIKTRIEKQL 411
            +L ELN  +  + +YE+ +S  KN  ++KQ +  +I  R   QL
Sbjct: 1082 LLSELNRCRGTVSVYESSIS--KNRVELKQAQYKDIDKRHFDQL 1123


>At2g29310.1 68415.m03560 tropinone reductase, putative / tropine
           dehydrogenase, putative similar to tropinone reductase
           SP:P50165 from [Datura stramonium]
          Length = 262

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 176 VNVIRSRPTTVFVVDNKIISAHVPSNFTPS 87
           V VIR +PTT +V ++   S H+ +N  P+
Sbjct: 95  VGVIRGKPTTEYVAED--FSYHISTNLEPA 122


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,930,233
Number of Sequences: 28952
Number of extensions: 217375
Number of successful extensions: 698
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)