Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19b14
         (347 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    27   0.83 
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   1.5  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   1.5  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    25   4.4  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    24   5.9  
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo...    24   5.9  

>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 27.1 bits (57), Expect = 0.83
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = +2

Query: 29  SAFGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNL 181
           S FG+    +C+      +  FT S K        W   N +V ++H +N+
Sbjct: 120 SFFGNISAIFCDDKFPYAYATFTFSDKPSFTSIYRWNVTNSNVTIEHFYNV 170


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +2

Query: 65  QFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNL 181
           Q + A  + ++L    +   P  WEND    LLK  H +
Sbjct: 750 QLMVANLDTYSLDCYEIHEFPSEWENDYAPFLLKEHHKV 788


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 18  WSTSLRSAATLLTIANSLSRPFSKFLRSAVKSL 116
           WSTS    ++LL I   +  P SK L   +KS+
Sbjct: 359 WSTSWEMLSSLLAIDFDVLLPHSKILWECIKSV 391


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 36  SAATLLTIANSLSRPFSKFLRSAVKSLWPC 125
           SA TLL IA+ L +      ++ +K LW C
Sbjct: 538 SALTLLPIADKLVQEKLSSCKNLLKVLWDC 567


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = +2

Query: 41  SNVINYCEQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHL 172
           SN+++ CE  I+++++ ++ +  +   VP   +  N+    KHL
Sbjct: 70  SNLVSDCELKISSVYQSYSSTFNVSNHVPSISKTVNIRETSKHL 113


>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
           Aif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +2

Query: 107 KIVVAVPVNWENDNLSVLLKHLHNLNLIGIEIVN*NKSCGK 229
           K +V +  ++    L+V+LK  HN+++IG+E +   K  GK
Sbjct: 302 KNIVIIGSSFIGLELAVVLKD-HNVSVIGMESIPFEKVMGK 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,320,943
Number of Sequences: 5004
Number of extensions: 23338
Number of successful extensions: 70
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)