Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19b14
         (347 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40726| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.2  
SB_55826| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.7  
SB_45545| Best HMM Match : Vicilin_N (HMM E-Value=1.1)                 26   9.7  
SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41)        26   9.7  

>SB_40726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 346 IPPIR-CSALNWATPRLRNLNLMHSSNRDKSVRAKRSI 236
           +PP R  S+  W  PR RNL +   S R K  R +R++
Sbjct: 159 LPPHRLASSTKWTRPR-RNLEVGDISTRQKWTRPRRNL 195


>SB_55826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1199

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 304  RLRNLNLMHSSNRDKSVRAKRSITR 230
            R RN+ LMH   ++K + A+R   R
Sbjct: 1080 RRRNIELMHEKEQEKRMNAEREAIR 1104


>SB_45545| Best HMM Match : Vicilin_N (HMM E-Value=1.1)
          Length = 729

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 304 RLRNLNLMHSSNRDKSVRAKRSITR 230
           R RN+ LMH   ++K + A+R   R
Sbjct: 276 RRRNIELMHEKEQEKRMNAEREAIR 300


>SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41)
          Length = 1017

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 20  VDESAFGSNVINYCEQFITAIFEIFTLSSK 109
           + +++F   +INYC + +  IF   TL S+
Sbjct: 216 IQDNSFEQFIINYCNEKLQQIFIELTLKSE 245


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,520,787
Number of Sequences: 59808
Number of extensions: 164097
Number of successful extensions: 321
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)