Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19b14
         (347 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23169-7|AAL02449.1|  512|Caenorhabditis elegans Arginyl aa-trna...    29   1.2  
AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine re...    27   3.7  
Z81146-7|CAB03523.2|  517|Caenorhabditis elegans Hypothetical pr...    26   8.5  

>U23169-7|AAL02449.1|  512|Caenorhabditis elegans Arginyl aa-trna
           synthetase protein2 protein.
          Length = 512

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 62  EQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNLN 184
           E+F   ++E F    K V     NW+ND   +L + + +++
Sbjct: 131 EEFRAKVYETFVAMEKAVTGEQENWKNDEHMMLWQQIKDIS 171


>AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 65 protein.
          Length = 325

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 241 SITRFST*FVLIYNFNSNEI*VVQMF 164
           S+  FST ++LIYNF +N +  ++ F
Sbjct: 19  SLCLFSTMYILIYNFTTNVLKAMRYF 44


>Z81146-7|CAB03523.2|  517|Caenorhabditis elegans Hypothetical
           protein K10D11.4 protein.
          Length = 517

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 176 NLNLIGIEIVN*NKSCGKS 232
           NLN  G+E+V+ N S GKS
Sbjct: 282 NLNEFGVEVVHLNASSGKS 300


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,245,056
Number of Sequences: 27780
Number of extensions: 128869
Number of successful extensions: 342
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)