Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19b12
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    73   3e-14
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    27   2.4  
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ...    26   4.2  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    25   7.4  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    25   9.8  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    25   9.8  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 72.9 bits (171), Expect = 3e-14
 Identities = 33/55 (60%), Positives = 44/55 (80%)
 Frame = +2

Query: 383 QNYTFQTEVNRMMKLIINSLYRNKEIFLRELISNGSDALDKIRLMSLTDRGVLEA 547
           + + F+ E++++M LIIN++Y NKEIFLRELISN SDALDKIR  SL+D   L+A
Sbjct: 5   ETFKFEAEISQLMSLIINTVYSNKEIFLRELISNASDALDKIRYQSLSDPHALDA 59


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -1

Query: 207 PESSRTPSPKSQICFIAGVKNIQRDLDVNYSILNNCRKC*LTQVPSFN 64
           P ++   SP S+   +AG  N+Q  +D+ +   NN +K  +T V + N
Sbjct: 311 PRNTLIFSPNSRYILLAGFGNLQGSIDI-FDAANNMKK--ITTVEAAN 355


>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
 Frame = -2

Query: 530 GPSATSDGSC--PTHLN---RSRSTRGGRSLY 450
           GPS TSDG C    +LN   R+ ST  G S++
Sbjct: 417 GPSGTSDGLCELQAYLNSPIRANSTSNGISIF 448


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -3

Query: 487  TVRDQLAEEDLFISVERVDDELHHAVDFRLERVVLRAV 374
            T+   L+ + L I+  R+ DE++  +D R ERVV R +
Sbjct: 964  TIMYLLSLQGLAIAPFRIVDEINQGMDPRNERVVHRHI 1001


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 207 PESSRTPSPKSQICFIAGVKNIQRDLDVNYSI 112
           P+   T +   +IC++  VKN++R LD+ + I
Sbjct: 249 PDPPYTDNEVRKICYVKPVKNLRR-LDIVFPI 279


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -3

Query: 478 DQLAEEDLFISVERVDDELHHAVDFRLERVVLRAVAQLLHLRHAQRVRGD 329
           D   EE    SV   ++E    VDF+ ER       + L LR  +  RGD
Sbjct: 630 DNEMEESSGSSVTAENEESADEVDFQTEREENARKKEELRLRFEEEDRGD 679


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,833,553
Number of Sequences: 5004
Number of extensions: 30366
Number of successful extensions: 87
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)