Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19b12
(552 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1404 - 29928792-29929040,29929147-29929551,29930130-299302... 94 6e-20
09_04_0548 - 18469636-18470037,18471164-18472705,18474052-184744... 78 4e-15
09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540 78 4e-15
08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201 78 4e-15
04_01_0042 + 473912-474058,474208-474349,474442-476264 78 5e-15
12_02_0522 - 19960092-19960595,19962737-19962880,19963042-199631... 75 5e-14
08_02_1073 - 24117834-24118037,24118122-24118211,24118299-241184... 73 2e-13
09_04_0497 - 18096299-18096496,18096586-18096675,18096809-180969... 72 4e-13
02_05_1011 + 33487670-33487958,33490794-33492100,33492541-334928... 28 4.3
09_06_0274 + 21967740-21968230,21968411-21968550,21968711-219689... 27 7.5
09_04_0213 + 15706638-15707915 27 10.0
08_01_0086 - 629043-629594 27 10.0
04_03_0250 - 13477020-13477550,13477572-13477933,13478026-134786... 27 10.0
>06_03_1404 -
29928792-29929040,29929147-29929551,29930130-29930280,
29930363-29930501,29930578-29930743,29930826-29931041,
29931142-29931323,29931412-29931538,29931974-29932112,
29932227-29932353,29932501-29932612,29932704-29932784,
29933330-29933483,29933569-29933689,29934003-29934045,
29934356-29934460
Length = 838
Score = 94.3 bits (224), Expect = 6e-20
Identities = 51/92 (55%), Positives = 63/92 (68%)
Frame = +2
Query: 266 LGSSREGSRTDAEAVLREEEAISPDALSVAQMKELRDRAQNYTFQTEVNRMMKLIINSLY 445
+G G TD+E V RE E+IS K LR A+ + FQ EV+R+M +IINSLY
Sbjct: 74 IGGVPHGLSTDSEVVQREAESIS--------RKTLRSSAEKFEFQAEVSRLMDIIINSLY 125
Query: 446 RNKEIFLRELISNGSDALDKIRLMSLTDRGVL 541
NK+IFLRELISN SDALDKIR ++LTD+ VL
Sbjct: 126 SNKDIFLRELISNASDALDKIRFLALTDKEVL 157
>09_04_0548 -
18469636-18470037,18471164-18472705,18474052-18474474,
18474874-18474999
Length = 830
Score = 78.2 bits (184), Expect = 4e-15
Identities = 35/60 (58%), Positives = 45/60 (75%)
Frame = +2
Query: 368 LRDRAQNYTFQTEVNRMMKLIINSLYRNKEIFLRELISNGSDALDKIRLMSLTDRGVLEA 547
+ + + FQ E+N+++ LIIN+ Y NKEIFLRELISN SDALDKIR SLTD+ L+A
Sbjct: 1 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDA 60
>09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540
Length = 699
Score = 78.2 bits (184), Expect = 4e-15
Identities = 35/60 (58%), Positives = 45/60 (75%)
Frame = +2
Query: 368 LRDRAQNYTFQTEVNRMMKLIINSLYRNKEIFLRELISNGSDALDKIRLMSLTDRGVLEA 547
+ + + FQ E+N+++ LIIN+ Y NKEIFLRELISN SDALDKIR SLTD+ L+A
Sbjct: 1 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDA 60
>08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201
Length = 699
Score = 78.2 bits (184), Expect = 4e-15
Identities = 35/60 (58%), Positives = 45/60 (75%)
Frame = +2
Query: 368 LRDRAQNYTFQTEVNRMMKLIINSLYRNKEIFLRELISNGSDALDKIRLMSLTDRGVLEA 547
+ + + FQ E+N+++ LIIN+ Y NKEIFLRELISN SDALDKIR SLTD+ L+A
Sbjct: 1 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDA 60
>04_01_0042 + 473912-474058,474208-474349,474442-476264
Length = 703
Score = 77.8 bits (183), Expect = 5e-15
Identities = 35/55 (63%), Positives = 44/55 (80%)
Frame = +2
Query: 383 QNYTFQTEVNRMMKLIINSLYRNKEIFLRELISNGSDALDKIRLMSLTDRGVLEA 547
+ + FQ E+N+++ LIIN+ Y NKEIFLRELISN SDALDKIR SLTD+ L+A
Sbjct: 13 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDA 67
>12_02_0522 -
19960092-19960595,19962737-19962880,19963042-19963131,
19963215-19963320,19963400-19963574,19963849-19963951,
19964382-19964636,19964726-19964803,19964908-19965000,
19965091-19965222,19965898-19966002,19966127-19966201,
19966284-19966340,19966419-19966532,19966613-19966756,
19966886-19966969,19967071-19967164,19967244-19967369,
19967507-19967580,19967672-19967875,19968234-19968388,
19968860-19968947,19969505-19969730,19970235-19970286,
19970766-19970958,19973221-19973314,19973744-19973788,
19974874-19974896
Length = 1210
Score = 74.5 bits (175), Expect = 5e-14
Identities = 39/89 (43%), Positives = 56/89 (62%), Gaps = 2/89 (2%)
Frame = +2
Query: 284 GSRTDAEAVLREEEAISPDALSVAQMKELRDR--AQNYTFQTEVNRMMKLIINSLYRNKE 457
G+ A LRE + S A + D + + +Q EVNR+M LI++SLY NKE
Sbjct: 318 GTDNAASLKLREGSLVGRRYESSAAAVDSSDTPPVEKHEYQAEVNRLMDLIVHSLYSNKE 377
Query: 458 IFLRELISNGSDALDKIRLMSLTDRGVLE 544
+FLREL+SN SDALDK+R +S+TD +++
Sbjct: 378 VFLRELVSNASDALDKLRYLSVTDPDLIK 406
>08_02_1073 -
24117834-24118037,24118122-24118211,24118299-24118404,
24118477-24118648,24118737-24118839,24118927-24119181,
24119259-24119336,24119449-24119541,24119660-24119800,
24119882-24119986,24120135-24120212,24120297-24120341,
24120463-24120579,24120685-24120828,24120934-24121017,
24121139-24121232,24121322-24121447,24121585-24121658,
24121870-24122098,24123124-24123611,24123702-24123749,
24123841-24124077,24124368-24124404,24125011-24125018
Length = 1051
Score = 72.9 bits (171), Expect = 2e-13
Identities = 32/65 (49%), Positives = 48/65 (73%)
Frame = +2
Query: 347 SVAQMKELRDRAQNYTFQTEVNRMMKLIINSLYRNKEIFLRELISNGSDALDKIRLMSLT 526
+VA+ E + + +Q EV+R+M LI++SLY +KE+FLREL+SN SDALDK+R + +T
Sbjct: 330 AVAEKAEETAEEEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLGVT 389
Query: 527 DRGVL 541
D +L
Sbjct: 390 DSSLL 394
>09_04_0497 -
18096299-18096496,18096586-18096675,18096809-18096914,
18097005-18097179,18097263-18097365,18097458-18097712,
18097791-18097868,18097986-18098078,18098179-18098319,
18098406-18098510,18098658-18098738,18098825-18098866,
18098966-18099082,18099208-18099351,18099485-18099568,
18099683-18099803,18099863-18099988,18100106-18100179,
18100388-18100657
Length = 800
Score = 71.7 bits (168), Expect = 4e-13
Identities = 30/53 (56%), Positives = 44/53 (83%)
Frame = +2
Query: 383 QNYTFQTEVNRMMKLIINSLYRNKEIFLRELISNGSDALDKIRLMSLTDRGVL 541
+ + +Q EV+R++ LI++SLY +KE+FLREL+SN SDALDK+R +S+TD VL
Sbjct: 83 EQFEYQAEVSRLLDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTDSSVL 135
>02_05_1011 +
33487670-33487958,33490794-33492100,33492541-33492853,
33493190-33494247
Length = 988
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 125 TSKSRWMFLTPAMKHIWLFGLGVLLLSGW 211
TS S W+FL P +WL L +G+
Sbjct: 572 TSTSMWIFLQPLTTSLWLASLAFFCFTGF 600
>09_06_0274 +
21967740-21968230,21968411-21968550,21968711-21968905,
21969524-21969652,21970063-21970218,21970507-21970589,
21972229-21972433,21972601-21972805,21973059-21973194,
21973990-21974164,21974470-21974528,21974642-21974716,
21974804-21974920,21975010-21975080,21975170-21975473,
21975721-21976086,21976404-21976514
Length = 1005
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 295 SAGSFSG*TQVGIDCDLFHCA 233
+AG+ +G +VGI C LFH A
Sbjct: 84 AAGTAAGGVEVGISCGLFHSA 104
>09_04_0213 + 15706638-15707915
Length = 425
Score = 27.1 bits (57), Expect = 10.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 140 WMFLTPAMKHIWLFGLGVLLLSGWS 214
W+FL P +WL LLL+G++
Sbjct: 39 WVFLKPLRYDLWLASAAFLLLTGFA 63
>08_01_0086 - 629043-629594
Length = 183
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2
Query: 536 RRGPSATSDGSCPTHLNRSRSTRG 465
RRG + DG C HL RSR++RG
Sbjct: 28 RRGYIPSDDGVCD-HLERSRASRG 50
>04_03_0250 -
13477020-13477550,13477572-13477933,13478026-13478682,
13480142-13480232
Length = 546
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -2
Query: 551 GSLPARRGPSATSDGSCPTHLNRSRSTRGGRSLYFCRAS 435
G LP+R PS D T R R+ G + CR++
Sbjct: 290 GELPSRLKPSQVGDDEAGTSRKRKRAIVKGGQIRTCRST 328
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,294,062
Number of Sequences: 37544
Number of extensions: 211019
Number of successful extensions: 599
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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