Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19b12
         (552 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)                      142   1e-34
SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)                    38   0.004
SB_42397| Best HMM Match : rve (HMM E-Value=0.0007)                    28   4.4  
SB_7198| Best HMM Match : rve (HMM E-Value=3.5e-14)                    28   4.4  
SB_23587| Best HMM Match : ERp29 (HMM E-Value=1.6e-06)                 28   5.8  
SB_9689| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.7  

>SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 855

 Score =  142 bits (345), Expect = 1e-34
 Identities = 71/93 (76%), Positives = 79/93 (84%)
 Frame = +2

Query: 269 GSSREGSRTDAEAVLREEEAISPDALSVAQMKELRDRAQNYTFQTEVNRMMKLIINSLYR 448
           G SR+ SRTD EAV REEEAI  D L+VAQMKELRD+A+ + FQ EVNRMMKLIINSLYR
Sbjct: 39  GKSRDASRTDDEAVQREEEAIKLDGLNVAQMKELRDKAEKHEFQAEVNRMMKLIINSLYR 98

Query: 449 NKEIFLRELISNGSDALDKIRLMSLTDRGVLEA 547
           NKEIFLRELISN SDALDKIRLMSLTD+   ++
Sbjct: 99  NKEIFLRELISNSSDALDKIRLMSLTDKTAFDS 131


>SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)
          Length = 739

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
 Frame = +2

Query: 404 EVNRMMKLIINSLYRN-KEIFLRELISNGSDALDKIRLMSLTDRGVLE 544
           +V   ++L+++S      ++F+RE+ISN SDAL+K+R   LT + V E
Sbjct: 66  DVEEPLELLMSSQKTKLSQVFIREVISNASDALEKVRHFFLTGKDVSE 113


>SB_42397| Best HMM Match : rve (HMM E-Value=0.0007)
          Length = 729

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 272 SSREGSRTDAEAVLREEEAISPDALSVAQMKELRDRAQ 385
           +SR  S+++ E       A  PDA  +AQM  +RD AQ
Sbjct: 418 TSRHPSQSNTEEKAPLCSASPPDAAEIAQMTAIRDTAQ 455


>SB_7198| Best HMM Match : rve (HMM E-Value=3.5e-14)
          Length = 865

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 272 SSREGSRTDAEAVLREEEAISPDALSVAQMKELRDRAQ 385
           +SR  S+++ E       A  PDA  +AQM  +RD AQ
Sbjct: 420 TSRHPSQSNTEEKAPLCSASPPDAAEIAQMTAIRDTAQ 457


>SB_23587| Best HMM Match : ERp29 (HMM E-Value=1.6e-06)
          Length = 83

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +2

Query: 317 EEEAISPDALSVAQMKELRDRAQNYTFQTEVNRMMKLIINSLYRNKE 457
           +E+  S   + V  MK+++++   Y   TE+ R+ KL+ + L  NK+
Sbjct: 15  DEKGKSSGDMYVKIMKKIQEKGTGY-IDTEITRVKKLLKDKLTENKK 60


>SB_9689| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 192

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = +2

Query: 356 QMKELRDRAQNYTFQTEVNRMMKLIINSLYRNKEIFLRELIS 481
           QM++L DR      QT+    +K++ N LY+ KE  +RE I+
Sbjct: 82  QMRKLIDRMD----QTKKEMCLKVLTNILYQGKEGKIREAIN 119


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,855,212
Number of Sequences: 59808
Number of extensions: 226657
Number of successful extensions: 618
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)