Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19b12
         (552 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.3  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   8.3  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 542 PARRGPSATSDGSCPTHLNRS 480
           P  R P A S   CP  +++S
Sbjct: 467 PVLRSPPAFSHSRCPPEIHKS 487


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 542 PARRGPSATSDGSCPTHLNRS 480
           P  R P A S   CP  +++S
Sbjct: 467 PVLRSPPAFSHSRCPPEIHKS 487


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 530 GPSATSDGSCPTHLNRSRSTRGGRSLYFCRAS 435
           G   T +G   +HLN S +      LY C A+
Sbjct: 443 GQYVTVNGDVVSHLNISSTHTNDGGLYKCIAA 474


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 436 VDDELHHAVDFRLERVVLRAVAQLLHLRH 350
           VDD+L  A+         R +A+ LH+ H
Sbjct: 69  VDDDLIKAIIDSDRHSTTREIAEKLHVSH 97


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,858
Number of Sequences: 438
Number of extensions: 2217
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)