Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19b11
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    29   0.61 
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    28   1.1  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    26   3.3  
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    26   4.3  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    26   4.3  
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar...    25   7.5  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    25   7.5  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    25   7.5  
SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb...    25   10.0 
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   10.0 
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   10.0 
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    25   10.0 
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3...    25   10.0 

>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 28.7 bits (61), Expect = 0.61
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -3

Query: 499 PISTGCIPPFRGCPTDSMARPNSCLQLIC*QKFMQ-QKWFGFDETQFEILAAF 344
           P+S   IPP     TD ++  N    LIC    +Q    F FD  Q E L +F
Sbjct: 268 PLSPSIIPPLVSAITDRLSFDNIKPALICVGHLLQFCSSFEFDHEQLEKLESF 320


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
 Frame = +2

Query: 143 WCVYILR----QDNGKLYTGITSNLNRRIKQHSNK 235
           +C Y+L+    Q +G +Y G T +  RR++QH+ +
Sbjct: 7   YCCYLLKSNRTQSSGAVYIGSTPDPPRRLRQHNGE 41


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 439 DVPYYRLGNHEKVEYIPLKLALNDDITSEPQQFSEPV 549
           ++PY    NHE++  IPL+   N +I   P Q   P+
Sbjct: 390 NIPYSPNSNHEEINSIPLR---NKNIFVPPSQGHSPL 423


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 439 DVPYYRLGNHEKVEYIPLKLALNDDITSEPQQFSEPVYK 555
           ++PY     H  +E   L L+L      EP+ F  P YK
Sbjct: 760 EIPYLDPLEHMHIESSTLSLSLRKLEILEPKLFDSPYYK 798


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 261  ALRKHLAPCLFECCFMRLLRLLVMPV 184
            +L +H  PC+ + CF + LR  ++ +
Sbjct: 1298 SLMQHFLPCILDSCFSKNLRYSMLGI 1323


>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
           Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 258 LRKHLAPCLFECCFMRLLRLLVMPVY 181
           LRK   PC  + C  R+ +  + P+Y
Sbjct: 179 LRKKTVPCPVQHCRKRITKKFIFPLY 204


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 447 WHVQIHVYNLFANRNLCNKSGL 382
           WHV  H+   F N  LC K+ +
Sbjct: 263 WHVPCHMIYKFWNVKLCQKTSI 284


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +3

Query: 363 NCVSSKPNHFCCINF 407
           +C+  +P+ FCC++F
Sbjct: 168 DCIKKEPSLFCCLDF 182


>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 460 GNHEKVEYIPLKLALNDDITSEP 528
           G    +E+ P K+ + DD+T EP
Sbjct: 138 GRSYHLEFNPPKVPMKDDVTGEP 160


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 437 WTCHTIGWATTKRWNTSR*NWRSTMISPANRNNLASPFTK 556
           WTC T  +AT ++ +T +    +   + A  NNL    T+
Sbjct: 303 WTCATCSFATQRKKSTFQKENANVDANHATENNLEGQATQ 342


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 261 ALRKHLAPCLFECCFMRLLRLLVMPV 184
           AL +    CL EC F +LL    +PV
Sbjct: 153 ALEESTVSCLLECVFHQLLSAKNLPV 178


>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 233 KQGAKCLRNATNLRLVYHSASA 298
           ++ A+CL  A N ++VYH   A
Sbjct: 452 RETARCLEKAGNKQVVYHELDA 473


>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 128 YTNKVWCVYILRQDNGKLYTGITSNLN 208
           +T+ ++CV    Q+   L  G+T N N
Sbjct: 101 FTHGLFCVVFYHQNKSYLKMGVTDNFN 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,161,691
Number of Sequences: 5004
Number of extensions: 41004
Number of successful extensions: 110
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)