Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19b11
         (558 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_25412| Best HMM Match : rve (HMM E-Value=1.6e-05)                   29   3.4  
SB_21529| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_7910| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.5  
SB_54821| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_32061| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_20449| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1719

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +2

Query: 86   KHERTHCIIMATTLYTNKVWCVYILRQDNGKLYTGITSNLNRR 214
            KH+R  C++    L  N  + ++I+  D+ K     + +L RR
Sbjct: 1471 KHKRNLCVMNVVLLVPNVYYSLHIVLHDDAKCVANTSFDLRRR 1513


>SB_25412| Best HMM Match : rve (HMM E-Value=1.6e-05)
          Length = 508

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +3

Query: 366 CVSSKPNHFCCINFC*QISCKHEFGRAILSVGQPRKGGIHPVEI 497
           C++S+PNH C    C Q++ ++     +L+V       +H +++
Sbjct: 442 CLNSEPNHPCGHGCCQQLAYRYSVNSGLLTVTNEGYAVLHTLKL 485


>SB_21529| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/64 (25%), Positives = 32/64 (50%)
 Frame = +1

Query: 127 VHQQGVVRVHSAAGQWKIVHGHHEQP*QTHKTAFEQTRRQVFAQRNQFTARVSQRERVRL 306
           +HQQ  +  H    Q++  H H  Q    H+   +Q ++Q   Q+ Q   +  Q+++ +L
Sbjct: 290 LHQQHQLHQHQQQHQYQQQHQHQHQ--HQHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQL 347

Query: 307 QNRR 318
           Q ++
Sbjct: 348 QQQQ 351


>SB_7910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 419

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 167 DNGKLYTGITSNLNRRIKQ-HSNKQGAKCLRNATNLRLVY 283
           D      GI + +  RIK+ H N +   CL +A NL +V+
Sbjct: 308 DGASNMAGIRNGVQARIKEVHPNAEYVHCLAHALNLSIVH 347


>SB_54821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 528

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +2

Query: 83  AKHERTHCIIMATTLYTNKVWCVYILRQDNGKLYTGITSNLNRRI 217
           A H    C ++ T  +   V CV IL    G LYTG  S L+  I
Sbjct: 237 ASHRLLFCSLIGTGYHLALVACVVILFTIMGDLYTGRGSILSATI 281


>SB_32061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +2

Query: 152 YILRQDNGKLYTGITSNLNRRIKQHSNKQGAKCLRNATNLRLVY 283
           + L QD+ ++ + I S   R+  +H  +    C R+   L+ VY
Sbjct: 175 FFLYQDDQEVESKIESTSGRKTVKHKERVSRNCARDVQGLKRVY 218


>SB_20449| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 305

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +2

Query: 86  KHERTHCIIMATTLYTNKVWCVYILRQDNGKLYTGITSNLNRRIKQHSNK 235
           + E   C +      +NK+  +Y   Q   K   GI SN + +IK  SNK
Sbjct: 101 EEELMRCTLKGKGRTSNKMQIIYGNSQQCEKCRKGILSNFSDQIKMISNK 150


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,736,820
Number of Sequences: 59808
Number of extensions: 342274
Number of successful extensions: 1047
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)