Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19b11
         (558 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    23   6.8  
AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical prote...    23   6.8  
AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical prote...    23   6.8  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    23   9.0  

>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 548 TGSLNCCGSLVISSL 504
           TG L+CC SL ++ L
Sbjct: 535 TGHLSCCNSLFLNDL 549


>AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 84  PNTKGRTV*SWRRLCTPTRCG-ACTFCGRTMENCTRASRAT 203
           P   GR   +W+RL + T CG      G T+  C  A+ AT
Sbjct: 131 PYRAGRVGQTWQRLLSVTTCGLLLLLLGATV--CRGANGAT 169


>AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 84  PNTKGRTV*SWRRLCTPTRCG-ACTFCGRTMENCTRASRAT 203
           P   GR   +W+RL + T CG      G T+  C  A+ AT
Sbjct: 131 PYRAGRVGQTWQRLLSVTTCGLLLLLLGATV--CRGANGAT 169


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 232 QTRRQVFAQRNQFTARVSQRERVRLQNRRPHGI 330
           +  R+  A R +   R  +RER R+ +  PH +
Sbjct: 514 EKEREREAARERERERERERERERMMHMMPHSL 546


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 572,896
Number of Sequences: 2352
Number of extensions: 10850
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 52142868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)