Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19b11
         (558 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M82887-1|AAB59218.1|  640|Drosophila melanogaster dual bar prote...    29   3.2  
M82884-1|AAA28383.2|  645|Drosophila melanogaster dual bar prote...    29   5.6  
BT022144-1|AAY51539.1|  645|Drosophila melanogaster IP01479p pro...    29   5.6  
AE014298-2565|AAF48725.1|  645|Drosophila melanogaster CG5488-PA...    29   5.6  
AY122074-1|AAM52586.1|  994|Drosophila melanogaster AT16994p pro...    28   7.4  
AE013599-641|AAF59100.3|  994|Drosophila melanogaster CG11641-PA...    28   7.4  
BT029079-1|ABJ17012.1|  304|Drosophila melanogaster IP09950p pro...    28   9.8  
AE014297-126|AAF52110.2|  307|Drosophila melanogaster CG18271-PA...    28   9.8  

>M82887-1|AAB59218.1|  640|Drosophila melanogaster dual bar protein
           protein.
          Length = 640

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = +1

Query: 121 DSVHQQGVVRVHSAAGQWKIVHGHHEQP*QTHKTAFEQTRRQVFAQRNQFT--ARVSQRE 294
           DS  +Q +V  H    Q +  H HH+Q  Q H+ A  Q   Q   Q+ Q     R  +RE
Sbjct: 96  DSEREQSLVAQHHHHHQQQQQHHHHQQQ-QQHQQAALQ---QYIVQQQQLLRFERERERE 151

Query: 295 RVRLQNRRPH 324
           R R   R  H
Sbjct: 152 REREHYRERH 161


>M82884-1|AAA28383.2|  645|Drosophila melanogaster dual bar protein
           protein.
          Length = 645

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = +1

Query: 121 DSVHQQGVVRVHSAAGQWKIVHGHHEQP*QTHKTAFEQTRRQVFAQRNQFT--ARVSQRE 294
           DS  +Q +V  H    Q +  H HH+Q  Q  +   +   +Q   Q+ Q     R  +RE
Sbjct: 96  DSEREQSLVAQHHHHHQQQQQHHHHQQQ-QQQQQHQQAALQQYIVQQQQLLRFERERERE 154

Query: 295 RVRLQNRRPH 324
           R R   R  H
Sbjct: 155 REREHYRERH 164


>BT022144-1|AAY51539.1|  645|Drosophila melanogaster IP01479p
           protein.
          Length = 645

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = +1

Query: 121 DSVHQQGVVRVHSAAGQWKIVHGHHEQP*QTHKTAFEQTRRQVFAQRNQFT--ARVSQRE 294
           DS  +Q +V  H    Q +  H HH+Q  Q  +   +   +Q   Q+ Q     R  +RE
Sbjct: 96  DSEREQSLVAQHHHHHQQQQQHHHHQQQ-QQQQQHQQAALQQYIVQQQQLLRFERERERE 154

Query: 295 RVRLQNRRPH 324
           R R   R  H
Sbjct: 155 REREHYRERH 164


>AE014298-2565|AAF48725.1|  645|Drosophila melanogaster CG5488-PA
           protein.
          Length = 645

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = +1

Query: 121 DSVHQQGVVRVHSAAGQWKIVHGHHEQP*QTHKTAFEQTRRQVFAQRNQFT--ARVSQRE 294
           DS  +Q +V  H    Q +  H HH+Q  Q  +   +   +Q   Q+ Q     R  +RE
Sbjct: 96  DSEREQSLVAQHHHHHQQQQQHHHHQQQ-QQQQQHQQAALQQYIVQQQQLLRFERERERE 154

Query: 295 RVRLQNRRPH 324
           R R   R  H
Sbjct: 155 REREHYRERH 164


>AY122074-1|AAM52586.1|  994|Drosophila melanogaster AT16994p
           protein.
          Length = 994

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 211 THKTAFEQTRRQVFAQRNQFTARVSQRERVRLQNRRPH 324
           TH+   +Q ++QV  QR +   R  +RER R + R  H
Sbjct: 394 THQQQQQQQQQQVQQQREREREREREREREREREREQH 431


>AE013599-641|AAF59100.3|  994|Drosophila melanogaster CG11641-PA
           protein.
          Length = 994

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 211 THKTAFEQTRRQVFAQRNQFTARVSQRERVRLQNRRPH 324
           TH+   +Q ++QV  QR +   R  +RER R + R  H
Sbjct: 394 THQQQQQQQQQQVQQQREREREREREREREREREREQH 431


>BT029079-1|ABJ17012.1|  304|Drosophila melanogaster IP09950p
           protein.
          Length = 304

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 173 GKLYTGITSNLNRRIKQHS 229
           GK Y G T N  RRI+QH+
Sbjct: 47  GKCYVGFTVNPKRRIRQHN 65


>AE014297-126|AAF52110.2|  307|Drosophila melanogaster CG18271-PA
           protein.
          Length = 307

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 173 GKLYTGITSNLNRRIKQHS 229
           GK Y G T N  RRI+QH+
Sbjct: 50  GKCYVGFTVNPKRRIRQHN 68


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,724,359
Number of Sequences: 53049
Number of extensions: 481326
Number of successful extensions: 1489
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1482
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2151905496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)