Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19b11
         (558 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75537-2|CAA99835.1|  622|Caenorhabditis elegans Hypothetical pr...    28   4.0  
Z70034-10|CAI79119.2|  560|Caenorhabditis elegans Hypothetical p...    27   6.9  
Z70034-3|CAA93860.2|  620|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z70034-2|CAA93854.3|  623|Caenorhabditis elegans Hypothetical pr...    27   6.9  

>Z75537-2|CAA99835.1|  622|Caenorhabditis elegans Hypothetical
           protein F18E2.2 protein.
          Length = 622

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/54 (22%), Positives = 28/54 (51%)
 Frame = +1

Query: 148 RVHSAAGQWKIVHGHHEQP*QTHKTAFEQTRRQVFAQRNQFTARVSQRERVRLQ 309
           ++H+  G + +    + Q  Q H+  F+Q ++Q+ A + +  +     E+V+ Q
Sbjct: 301 KLHTYRGNYTLFKKQYAQDMQVHEKNFDQQQKQLKAMKKEGKSAKQAEEQVKQQ 354


>Z70034-10|CAI79119.2|  560|Caenorhabditis elegans Hypothetical
           protein C18E9.3c protein.
          Length = 560

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/64 (28%), Positives = 24/64 (37%)
 Frame = +1

Query: 130 HQQGVVRVHSAAGQWKIVHGHHEQP*QTHKTAFEQTRRQVFAQRNQFTARVSQRERVRLQ 309
           HQ    ++H    Q +       QP Q H+            QRNQ  +   Q    R Q
Sbjct: 334 HQMNAGQLHQIQQQQQQCQQIQHQPPQQHQQVINGQVMNQQNQRNQVNSYPQQNGAGRGQ 393

Query: 310 NRRP 321
           NR+P
Sbjct: 394 NRQP 397


>Z70034-3|CAA93860.2|  620|Caenorhabditis elegans Hypothetical
           protein C18E9.3b protein.
          Length = 620

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/64 (28%), Positives = 24/64 (37%)
 Frame = +1

Query: 130 HQQGVVRVHSAAGQWKIVHGHHEQP*QTHKTAFEQTRRQVFAQRNQFTARVSQRERVRLQ 309
           HQ    ++H    Q +       QP Q H+            QRNQ  +   Q    R Q
Sbjct: 394 HQMNAGQLHQIQQQQQQCQQIQHQPPQQHQQVINGQVMNQQNQRNQVNSYPQQNGAGRGQ 453

Query: 310 NRRP 321
           NR+P
Sbjct: 454 NRQP 457


>Z70034-2|CAA93854.3|  623|Caenorhabditis elegans Hypothetical
           protein C18E9.3a protein.
          Length = 623

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/64 (28%), Positives = 24/64 (37%)
 Frame = +1

Query: 130 HQQGVVRVHSAAGQWKIVHGHHEQP*QTHKTAFEQTRRQVFAQRNQFTARVSQRERVRLQ 309
           HQ    ++H    Q +       QP Q H+            QRNQ  +   Q    R Q
Sbjct: 397 HQMNAGQLHQIQQQQQQCQQIQHQPPQQHQQVINGQVMNQQNQRNQVNSYPQQNGAGRGQ 456

Query: 310 NRRP 321
           NR+P
Sbjct: 457 NRQP 460


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,221,831
Number of Sequences: 27780
Number of extensions: 244036
Number of successful extensions: 719
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)