Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19b10
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    32   0.089
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    29   0.63 
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    27   3.4  
SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom...    26   4.4  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    25   7.8  

>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 31.9 bits (69), Expect = 0.089
 Identities = 22/85 (25%), Positives = 36/85 (42%)
 Frame = +3

Query: 294 KLIAPIAAHGQRARLSLPHQTDAIQCSQTKLPRDQRAHARRCSKRTAAKPPFT*SHENLE 473
           +++A      Q + L+L   + A   S T   +D R+ A   S+  +  P      +  E
Sbjct: 83  RMLAEALGLPQPSALALT-SSKAANRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141

Query: 474 SSRSGHTLGRRRLSFVYRRHISTRY 548
            +RS H  G  R    YR H+S  +
Sbjct: 142 RTRSNHRHGSHRRHEPYRTHLSRHH 166


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 319 MDNVPDFHYHTKQTRSNAVRQNFPETNVRTP 411
           MD++ DF+++ K T SN  + N+   N RTP
Sbjct: 1   MDDLLDFNFYDKSTPSN--QNNYSNNNSRTP 29


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = +1

Query: 100 TSTPAG-FTNVLNAPSVRNLGNNRYQPGYQLSNN--RFVSTSDINRITRNNDVPNIRNVF 270
           T TP    +N LN+  V N    +  P    S+N  RF  TS+ + I  + + P   +V+
Sbjct: 224 TYTPLSEISNGLNSNGVENSSITKSSPRSSSSSNNERFKDTSEESIIFTSPNTPEHPSVY 283

Query: 271 QGISDPQI 294
           Q    P+I
Sbjct: 284 QTDITPEI 291


>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +1

Query: 190 SNNRFVSTSDINRITRNNDVPNIRNVFQGISDPQINSLRQLRRMDNVPD 336
           SN+R V T+D N +    D+ N++     +S  Q+ ++R ++  ++  D
Sbjct: 200 SNHRMVYTADNNNLVYCYDIANLKTPLSVLSGHQL-AVRSIKSSNSAHD 247


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = +3

Query: 222 KQNHS*QRCPQHTQCISGHFRPSNKLIAPIAAHGQRARLSLPHQTDAIQCSQTKLPRDQR 401
           K NH    CP    C++   +P    +AP+ +   RA +SLP Q +  +     +P   R
Sbjct: 404 KINHVLDTCPL---CLNYETQP----LAPVISLSHRAYVSLPTQPELAKYHCLIVPTGHR 456

Query: 402 AHARRCSK 425
            +   C +
Sbjct: 457 INTLSCDE 464


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,798,909
Number of Sequences: 5004
Number of extensions: 59538
Number of successful extensions: 230
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)