Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19b10
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30334| Best HMM Match : Myosin_head (HMM E-Value=8.8e-12)           32   0.50 
SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.66 
SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_6767| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.2  
SB_39630| Best HMM Match : Pro_Al_protease (HMM E-Value=1.8)           31   1.2  
SB_14319| Best HMM Match : Pedibin (HMM E-Value=2.5)                   31   1.2  
SB_10064| Best HMM Match : Strep_SA_rep (HMM E-Value=8.4)              31   1.2  
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_4148| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.5  
SB_54511| Best HMM Match : Strep_SA_rep (HMM E-Value=8)                30   2.0  
SB_27113| Best HMM Match : Str_synth (HMM E-Value=0)                   30   2.0  
SB_9323| Best HMM Match : MutS_IV (HMM E-Value=3.2)                    30   2.0  
SB_2482| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.0  
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.5  
SB_3924| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)                  29   4.7  
SB_19186| Best HMM Match : SCAN (HMM E-Value=5.9)                      28   6.2  
SB_11107| Best HMM Match : Plasmodium_HRP (HMM E-Value=10)             28   6.2  
SB_39231| Best HMM Match : zf-C2H2 (HMM E-Value=3.4e-31)               28   8.1  
SB_35870| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_41631| Best HMM Match : Ank (HMM E-Value=0.00018)                   28   8.1  

>SB_30334| Best HMM Match : Myosin_head (HMM E-Value=8.8e-12)
          Length = 280

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +1

Query: 145 VRNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNVFQG-ISDPQINSLRQLRRM 321
           +++ G   Y   Y+L         D+ R+TR  D  N  N  QG +SDP ++     +RM
Sbjct: 53  MQSKGERNYHVFYRLCAGAPKQIKDMLRLTRAQDF-NYLN--QGSLSDPNLDDTSDFKRM 109

Query: 322 DNVPDFHYHTKQTRSNAVR 378
           D   D    +K+ +SN  R
Sbjct: 110 DASMDNVGFSKEEKSNIYR 128


>SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1056

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +3

Query: 195 QPVCEHFRHKQNHS*QRCPQHTQCISGHFRPSNKLIAPIAAHGQRA-RLSLPHQTDAIQC 371
           QP  EH +    HS Q  P+H+Q    H +PS +   P   H Q +   SLP Q  ++  
Sbjct: 771 QPSPEHSQPSPEHS-QPSPEHSQPSPEHSQPSPEHCQPSPEHSQPSPEHSLPSQEHSLPS 829

Query: 372 SQTKL 386
             + L
Sbjct: 830 PTSSL 834


>SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2468

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +1

Query: 241 NDVPNIRNVF--QGISDPQINSLRQLRRMDNVP 333
           +D PN+RN    +  S+P   SL  L R DNVP
Sbjct: 235 SDTPNVRNALGPKNTSEPHTLSLSHLPRSDNVP 267


>SB_6767| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +1

Query: 241 NDVPNIRNVF--QGISDPQINSLRQLRRMDNVP 333
           +D PN+RN    +  S+P   SL  L R DNVP
Sbjct: 235 SDTPNVRNALGPKNTSEPHTLSLSHLPRSDNVP 267


>SB_39630| Best HMM Match : Pro_Al_protease (HMM E-Value=1.8)
          Length = 245

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +1

Query: 241 NDVPNIRNVF--QGISDPQINSLRQLRRMDNVP 333
           +D PN+RN    +  S+P   SL  L R DNVP
Sbjct: 157 SDTPNVRNALGPKNTSEPHTLSLSHLPRSDNVP 189


>SB_14319| Best HMM Match : Pedibin (HMM E-Value=2.5)
          Length = 226

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +1

Query: 241 NDVPNIRNVF--QGISDPQINSLRQLRRMDNVP 333
           +D PN+RN    +  S+P   SL  L R DNVP
Sbjct: 114 SDTPNVRNALGPKNTSEPHTLSLSHLPRSDNVP 146


>SB_10064| Best HMM Match : Strep_SA_rep (HMM E-Value=8.4)
          Length = 216

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +1

Query: 241 NDVPNIRNVF--QGISDPQINSLRQLRRMDNVP 333
           +D PN+RN    +  S+P   SL  L R DNVP
Sbjct: 104 SDTPNVRNALGPKNTSEPHTLSLSHLPRSDNVP 136


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 289  QINSLRQLRRMDNVPDFHYHTKQTRSNAVRQNFPETNVRTPEGVQN 426
            ++NSL  L   D+  +FH  ++   S A++ +F   N +T E   N
Sbjct: 3018 EVNSLSMLSTTDSSFNFHEQSQSVTSGAIKSSFSLKNSQTSEESSN 3063


>SB_4148| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = +1

Query: 124 NVLNAPSVRNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNVFQGISDPQI 294
           N  N  +  N  NN      + +NNR  S+++ NR  RNND  NI N+ +  S+ ++
Sbjct: 85  NNSNNNNRNNNSNNNSNNNNRSNNNRNNSSNNNNRSNRNNDSNNI-NISRNNSNSRV 140


>SB_54511| Best HMM Match : Strep_SA_rep (HMM E-Value=8)
          Length = 267

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +1

Query: 241 NDVPNIRNVF--QGISDPQINSLRQLRRMDNVP 333
           +D PN+RN    +  S+P   SL  L R DNVP
Sbjct: 114 SDTPNVRNALGPKNTSEPHTLSLFHLPRSDNVP 146


>SB_27113| Best HMM Match : Str_synth (HMM E-Value=0)
          Length = 607

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +1

Query: 241 NDVPNIRNVF--QGISDPQINSLRQLRRMDNVP 333
           +D PN+RN    +  S+P   SL  L R DNVP
Sbjct: 547 SDTPNVRNALGPKNTSEPHTLSLFHLPRSDNVP 579


>SB_9323| Best HMM Match : MutS_IV (HMM E-Value=3.2)
          Length = 245

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +1

Query: 241 NDVPNIRNVF--QGISDPQINSLRQLRRMDNVP 333
           +D PN+RN    +  S+P   SL  L R DNVP
Sbjct: 157 SDTPNVRNALGPKNTSEPHTLSLFHLPRSDNVP 189


>SB_2482| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +1

Query: 241 NDVPNIRNVF--QGISDPQINSLRQLRRMDNVP 333
           +D PN+RN    +  S+P   SL  L R DNVP
Sbjct: 235 SDTPNVRNALGPKNTSEPHTLSLFHLPRSDNVP 267


>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
 Frame = +3

Query: 324 QRARLSLP-HQTDAIQCSQTKLPRDQR-AHARRCSKRTAAKPPFT*SHENLESSRSGHTL 497
           QR R   P H   +   S+++ PR +R + + R  +R+ +  P   SH +   SRS    
Sbjct: 209 QRRRSHSPAHHRRSRSRSRSRSPRRRRRSRSPRRRRRSRSPSPHHRSHRSRSRSRSPRRR 268

Query: 498 GRRRLSFVYRRHISTRYN 551
             R  S  +RRH S  ++
Sbjct: 269 HSRSRSPTHRRHRSRSHS 286


>SB_3924| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)
          Length = 344

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +3

Query: 291 NKLIAPIAAHGQRARLSLPHQTDAIQCSQTKLPRDQRAHARRCSKRTAAKPPFT 452
           N++  P  A G+  + SL  +T   Q  + + P+DQ   A R     AA+P  T
Sbjct: 29  NQVSRPRQASGKPRQSSLKTKTSKPQVQEIRKPQDQDKQAARPRDTQAARPKDT 82


>SB_19186| Best HMM Match : SCAN (HMM E-Value=5.9)
          Length = 176

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +3

Query: 114 RFHKCAQRAQCTQPWK--QQISAGLSII*QPVCEHFRHKQNHS*QRCPQ 254
           RF K  +R Q  Q  K  + +   ++II  P  +  RH++NH     PQ
Sbjct: 50  RFRKLKRRTQLLQELKTIEDLFQNIAIIRTPSKKRIRHQRNHRESHHPQ 98


>SB_11107| Best HMM Match : Plasmodium_HRP (HMM E-Value=10)
          Length = 296

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 9/136 (6%)
 Frame = +1

Query: 85  NTRLLTSTPAGFTNVLNAPSVRNLGNNRYQPGYQLSNNRFVST--SDINRITRNNDVPNI 258
           N+   T+     TN     S+ N   +   P     N+   +T  + +   TR+N +PN 
Sbjct: 79  NSLTNTTRHNSLTNTTRHNSLTNTTRHNSLPNTARHNSLTNTTRHNSLTNTTRHNSLPNT 138

Query: 259 RNVFQGISDPQINSLRQLRRMDNVPDFHYHT---KQTRSNAV----RQNFPETNVRTPEG 417
                  +  + NSL  + R +++P+   H      TR N++    R N P    R    
Sbjct: 139 ARHKSPTNTTRHNSLPNITRHNSLPNTARHNSLPNTTRHNSLPNTARHNSPPNTTR-HNS 197

Query: 418 VQNALQQNPRLHNHMR 465
           + N  + N  LH+  R
Sbjct: 198 LPNTTRHN-SLHSTTR 212


>SB_39231| Best HMM Match : zf-C2H2 (HMM E-Value=3.4e-31)
          Length = 505

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 187 LSNNRFVSTSDINRITRNNDVPNIRNVFQGISDPQINSLRQLRRMDNV 330
           +SN    S  D  R + N  +PNI +V      P I+   +L R DN+
Sbjct: 143 MSNEGLTSMHDTQRESINISIPNIHSVEILPPSPVISEHNELPRADNL 190


>SB_35870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +3

Query: 336 LSLPHQTDAIQCSQTKLPRDQRAHARRCSKRTAAKPPFT*SHENLESSRS 485
           +SL     + + +Q +LPR +     R   + AA PPF  S  N E +R+
Sbjct: 17  MSLVDILSSAKVNQLQLPRKKNLRLVRAKAKLAAHPPFA-SWRNSEEART 65


>SB_41631| Best HMM Match : Ank (HMM E-Value=0.00018)
          Length = 353

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 222 KQNHS*QRCPQHTQCI-SGHFRPSNKLIAPIAAHGQRARLSLPH 350
           KQ+H+ +R  +       GH  PS  L  P ++H   + L+LPH
Sbjct: 195 KQHHNDRRLSREEGSYREGHRSPSQPLFQPPSSHLISSHLTLPH 238


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,892,622
Number of Sequences: 59808
Number of extensions: 496533
Number of successful extensions: 1615
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1603
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)