Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19b10
(687 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z75954-3|CAB00108.1| 323|Caenorhabditis elegans Hypothetical pr... 30 1.3
AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed ... 30 1.3
U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated p... 30 1.8
U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated p... 30 1.8
AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interact... 30 1.8
Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z81495-5|CAB04059.1| 178|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical pr... 29 3.1
AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein. 29 3.1
AC084159-16|AAK39357.1| 205|Caenorhabditis elegans Hypothetical... 29 3.1
Z99269-1|CAB16467.1| 1461|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z81078-1|CAB03075.3| 441|Caenorhabditis elegans Hypothetical pr... 29 4.1
U80454-4|AAB37876.3| 896|Caenorhabditis elegans Prion-like-(q/n... 29 4.1
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 29 4.1
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 29 4.1
>Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical protein
F26A3.3 protein.
Length = 1632
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 355 VWCGNESLARCPCAAIGAMSLFEGLKCPEIHCVC 254
V G L + PC G + +FE + PE+H +C
Sbjct: 920 VLTGTVLLTKNPCIVAGDVRIFEAVDIPELHHMC 953
>Z75954-3|CAB00108.1| 323|Caenorhabditis elegans Hypothetical
protein F58H1.5 protein.
Length = 323
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 154 LGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNI 258
+ + +++P Q S+N+FVS SDI I + D +
Sbjct: 28 ISDEKFEPAEQCSSNQFVSISDIGTIYDSEDTQQL 62
>AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed RNA
polymerase relatedEGO-1 protein.
Length = 1632
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 355 VWCGNESLARCPCAAIGAMSLFEGLKCPEIHCVC 254
V G L + PC G + +FE + PE+H +C
Sbjct: 920 VLTGTVLLTKNPCIVAGDVRIFEAVDIPELHHMC 953
>U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated
protein 10, isoform b protein.
Length = 1371
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 318 HGQRARLSLPHQTDAI-QCSQTKLPRDQRAHARRCSKRTAAKPPFT*SHENLESSRSGHT 494
H +LSLPH A+ + T R++ + S P + ++ +GH
Sbjct: 781 HPALQQLSLPHSQSAVFPHNNTLTSRNRSTSSYYYSDVPDLGVPSNREMQESQAFGTGHI 840
Query: 495 LGRRRLSFVYRRH 533
GR +SFVY H
Sbjct: 841 FGRIEVSFVYSHH 853
>U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated
protein 10, isoform a protein.
Length = 1563
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 318 HGQRARLSLPHQTDAI-QCSQTKLPRDQRAHARRCSKRTAAKPPFT*SHENLESSRSGHT 494
H +LSLPH A+ + T R++ + S P + ++ +GH
Sbjct: 781 HPALQQLSLPHSQSAVFPHNNTLTSRNRSTSSYYYSDVPDLGVPSNREMQESQAFGTGHI 840
Query: 495 LGRRRLSFVYRRH 533
GR +SFVY H
Sbjct: 841 FGRIEVSFVYSHH 853
>AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interacting
molecule UNC-10 protein.
Length = 1563
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 318 HGQRARLSLPHQTDAI-QCSQTKLPRDQRAHARRCSKRTAAKPPFT*SHENLESSRSGHT 494
H +LSLPH A+ + T R++ + S P + ++ +GH
Sbjct: 781 HPALQQLSLPHSQSAVFPHNNTLTSRNRSTSSYYYSDVPDLGVPSNREMQESQAFGTGHI 840
Query: 495 LGRRRLSFVYRRH 533
GR +SFVY H
Sbjct: 841 FGRIEVSFVYSHH 853
>Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical protein
C05C9.3 protein.
Length = 1225
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Frame = +1
Query: 181 YQLSNNRFVSTSDINRITRNNDVPNIRNVFQGISDPQINSLRQLRRM-DNVPDFHYHTKQ 357
+QL N + R + + ++N + Q NS +Q ++ + + ++H +Q
Sbjct: 1064 HQLVNKVRPHYQQQGEMKRQDGMHQMQNQLHHHQNFQFNSGQQATQVHEQQQNQNHHVRQ 1123
Query: 358 TRSNAVRQNFPETNVRTPEGVQNALQQNPRLHNHMR 465
V Q+FP +V+ Q QQN R H+ +
Sbjct: 1124 AVQEEVFQSFPRHDVQRHIHGQTNYQQNQRQHSQQQ 1159
>Z81495-5|CAB04059.1| 178|Caenorhabditis elegans Hypothetical
protein F08G2.5 protein.
Length = 178
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +3
Query: 282 RPSNKLIAPIAAHGQRARLSLPH-QTDAIQCSQTKLPRDQRAHARRCSKRTAAKPPFT*S 458
R S+ ++ + + +R + ++ + S++ PR +RA +R SKR + KPP T S
Sbjct: 35 RYSDSTVSTLTSQDRRDTQGCQYPRSSELPISESPAPRARRARKQR-SKRKSVKPPNTSS 93
Query: 459 HENLESS 479
++ + S
Sbjct: 94 DDSSDDS 100
>Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical
protein F26A3.8 protein.
Length = 1601
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 346 GNESLARCPCAAIGAMSLFEGLKCPEIHCVC 254
G L + PC G + +FE + PE+H +C
Sbjct: 896 GTVLLTKNPCIVPGDVRIFEAVDIPELHHMC 926
>AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein.
Length = 1601
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 346 GNESLARCPCAAIGAMSLFEGLKCPEIHCVC 254
G L + PC G + +FE + PE+H +C
Sbjct: 896 GTVLLTKNPCIVPGDVRIFEAVDIPELHHMC 926
>AC084159-16|AAK39357.1| 205|Caenorhabditis elegans Hypothetical
protein Y73B3A.7 protein.
Length = 205
Score = 29.1 bits (62), Expect = 3.1
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
Frame = +1
Query: 175 PGYQLSNNRFVSTSDINRITRNNDVPNIRNVFQGISDPQINSLRQLRRMDNVPDFHYHTK 354
P L NR V + + + NND N +N Q I PQ+ ++ +R+ Y K
Sbjct: 3 PKNLLKKNRIVIEASLV-LHNNNDNNNNKNRMQMIMAPQLRRIQMVRK----SIMGYRGK 57
Query: 355 QTRSNAVRQNFPETNVRTPEGVQNALQQ-NPRLH 453
+ ++ T+ R P +N Q RLH
Sbjct: 58 RKTDQQLKSTNNPTSSRLPLNTKNVAQALGGRLH 91
>Z99269-1|CAB16467.1| 1461|Caenorhabditis elegans Hypothetical
protein W10C6.1 protein.
Length = 1461
Score = 28.7 bits (61), Expect = 4.1
Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 2/120 (1%)
Frame = +1
Query: 28 TNLRRVNKLYPNQASFLADNTRLLTSTPAGFTNVLNAPSVRNLGNNRYQPGYQLSNNRFV 207
T+L ++ + AS L D TR++ TP F+ + R+ G+ P L ++ V
Sbjct: 28 THLTQMCRRGDTNASLLRDFTRMIRDTPRNFSKNTQHGNDRDFGDLERDPDVDLLLSK-V 86
Query: 208 STSDINRITRNNDVPNIRNVF--QGISDPQINSLRQLRRMDNVPDFHYHTKQTRSNAVRQ 381
+ + +P +F +SD IN + + + + + TR N + +
Sbjct: 87 CLECVYVEPKEGAIPKANKIFISNFLSDMYINLVSVTGEVMKIIPIWKNAETTRKNLLEK 146
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 148 RNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNV 267
RN GNNRY P ++ +R D NR+T N VP+ +
Sbjct: 9 RNDGNNRYSPQDEV-EDRLPDVVD-NRLTENMRVPSFERL 46
>Z81078-1|CAB03075.3| 441|Caenorhabditis elegans Hypothetical
protein F36H2.2 protein.
Length = 441
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 44 SINCILIRPVFLLIIRVF*QALPPVSQMCSTRP 142
S N + + P +LLII AL P+ MC+ RP
Sbjct: 335 SANSLRLSPKYLLIISFLRFALIPMIAMCNVRP 367
>U80454-4|AAB37876.3| 896|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 66
protein.
Length = 896
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +1
Query: 124 NVLNAPSVRNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRN 264
NV NAP+V+N N + Q N + + N R ND PN++N
Sbjct: 611 NVQNAPNVQNASNVQNSQNGQNDKNDPNAQNSQNGQNRQND-PNVQN 656
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 148 RNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNV 267
RN GNNRY P ++ +R D NR+T N VP+ +
Sbjct: 9 RNDGNNRYSPQDEV-EDRLPDVVD-NRLTENMRVPSFERL 46
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 148 RNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNV 267
RN GNNRY P ++ +R D NR+T N VP+ +
Sbjct: 9 RNDGNNRYSPQDEV-EDRLPDVVD-NRLTENMRVPSFERL 46
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,017,655
Number of Sequences: 27780
Number of extensions: 366725
Number of successful extensions: 1093
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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