Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19b10
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g32190.1 68414.m03959 expressed protein                             34   0.10 
At1g51500.1 68414.m05796 ABC transporter family protein similar ...    31   0.72 
At4g00550.1 68417.m00076 UDP-galactose:MGDG galactosyltransferas...    29   2.2  
At4g39770.1 68417.m05632 trehalose-6-phosphate phosphatase, puta...    28   5.0  
At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli...    28   5.0  
At5g15260.1 68418.m01787 expressed protein predicted proteins, A...    28   6.7  
At3g52100.1 68416.m05717 PHD finger family protein contains Pfam...    27   8.8  
At2g27880.1 68415.m03380 argonaute protein, putative / AGO, puta...    27   8.8  
At2g22190.1 68415.m02635 trehalose-6-phosphate phosphatase, puta...    27   8.8  
At1g69640.1 68414.m08012 acid phosphatase, putative similar to G...    27   8.8  

>At1g32190.1 68414.m03959 expressed protein
          Length = 422

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 21/65 (32%), Positives = 24/65 (36%)
 Frame = -3

Query: 334 LARCPCAAIGAMSLFEGLKCPEIHCVCWGHRCYE*FCLCLKCSQTGC*IIDSPADICCFQ 155
           ++ C C      S F   KCP+  C CW          CLKC  T C         CC  
Sbjct: 349 VSSCCCPTFKCSSCFGKPKCPK--CSCW---------KCLKCPDTEC-----CRSSCCCS 392

Query: 154 GCVHW 140
           GC  W
Sbjct: 393 GCFSW 397


>At1g51500.1 68414.m05796 ABC transporter family protein similar to
           GB:AAF61569 from [Bombyx mori]
          Length = 687

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 22/74 (29%), Positives = 35/74 (47%)
 Frame = +1

Query: 4   VCFKMSFFTNLRRVNKLYPNQASFLADNTRLLTSTPAGFTNVLNAPSVRNLGNNRYQPGY 183
           VC+++ FF  L+   +  P   +  A  T         F  V   PS+ +L + R+QP +
Sbjct: 618 VCYRILFFIVLKLKERAEPALKAIQAKRTMKSLKKRPSFKKV---PSLSSLSSRRHQPLH 674

Query: 184 QLSNNRFVSTSDIN 225
            LS+   + TS IN
Sbjct: 675 SLSSQEGL-TSPIN 687


>At4g00550.1 68417.m00076 UDP-galactose:MGDG galactosyltransferase 2
           / digalactosyldiacylglycerol synthase 2 (DGD2) identical
           to digalactosyldiacylglycerol synthase (DGD2)
           GI:18141112 [Arabidopsis thaliana]
          Length = 473

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +1

Query: 166 RYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNVFQGIS 282
           R++  ++ +  RF+  SD+NR++R +   + R+VF   S
Sbjct: 375 RHELSWEAATQRFIKVSDLNRLSRADSNLSKRSVFASSS 413


>At4g39770.1 68417.m05632 trehalose-6-phosphate phosphatase,
           putative similar to trehalose-6-phosphate phosphatase
           (AtTPPB) [Arabidopsis thaliana] GI:2944180; contains
           Pfam profile PF02358: Trehalose-phosphatase
          Length = 349

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = +1

Query: 76  LADNTRLLTSTPAGFTNVLNAPSVRNLGNNRYQPGYQLSNNRFVSTSDINRITRNN--DV 249
           L D+  LL      F  +++    + +   +  PG Q+ NN+F  +    R+  NN  D+
Sbjct: 173 LQDSKSLLCQPATEFLPMIDEVYHKLVEKTKSTPGAQVENNKFCVSVHFRRVDENNWSDL 232

Query: 250 PN-IRNVFQ 273
            N +R+V +
Sbjct: 233 ANQVRSVMK 241


>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein
           helicase, putative 
          Length = 2172

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/57 (35%), Positives = 24/57 (42%)
 Frame = +1

Query: 34  LRRVNKLYPNQASFLADNTRLLTSTPAGFTNVLNAPSVRNLGNNRYQPGYQLSNNRF 204
           L RV       A F ADN  L   T AG TNV     +  LG N   PG   ++  +
Sbjct: 506 LNRVQSKVYGTALFKADNILLCAPTGAGKTNVAVLTILHQLGLN-MNPGGTFNHGNY 561


>At5g15260.1 68418.m01787 expressed protein predicted proteins,
           Arabidopsis thaliana
          Length = 234

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = +1

Query: 319 MDNVPDFHYHTKQTRSNA 372
           M + PDFH+H+KQ+R+++
Sbjct: 17  MAHSPDFHHHSKQSRTSS 34


>At3g52100.1 68416.m05717 PHD finger family protein contains Pfam
           profile PF00628: PHD-finger
          Length = 696

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 204 CEHFRHKQNHS*QR-CPQHTQCIS 272
           C+H RHK   S    CP+HT+C S
Sbjct: 242 CQHPRHKNVSSGPYLCPKHTKCYS 265


>At2g27880.1 68415.m03380 argonaute protein, putative / AGO,
           putative similar to SP|O04379 Argonaute protein (AGO1)
           {Arabidopsis thaliana}; contains Pfam profiles PF02170:
           PAZ domain, PF02171: Piwi domain
          Length = 997

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +2

Query: 89  RVF*QALPPVSQMCSTRPVYATLETTDISRAINY 190
           RV  QALP +     TRPVY  +E   I     Y
Sbjct: 442 RVKYQALPAIQTGSDTRPVYLPMELCQIDEGQRY 475


>At2g22190.1 68415.m02635 trehalose-6-phosphate phosphatase,
           putative similar to trehalose-6-phosphate phosphatase
           (AtTPPB) [Arabidopsis thaliana] GI:2944180; contains
           Pfam profile PF02358: Trehalose-phosphatase
          Length = 269

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +1

Query: 58  PNQAS-FLADNTRLLTSTPAGFTNVLNAPSVRNLGNNRYQPGYQLSNNRFVSTSDINRIT 234
           P Q S +  +N  LL      F  V+N    + + N +  PG ++ NN+F ++     + 
Sbjct: 86  PEQGSKYKKENQSLLCQPATEFLPVINEVYKKLVENTQSIPGAKVENNKFCASVHFRCVE 145

Query: 235 RN 240
            N
Sbjct: 146 EN 147


>At1g69640.1 68414.m08012 acid phosphatase, putative similar to
           GI:5360721 from [Lupinus albus]
          Length = 260

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 233 LVTTMSPTYAMYFRAFQTLK*THCANCGAW 322
           LV+ MSP  +++F +F T+K T   +CG W
Sbjct: 163 LVSGMSPRTSIFFFSFATIK-TVDDHCGLW 191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,812,382
Number of Sequences: 28952
Number of extensions: 322097
Number of successful extensions: 789
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)