Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19b06
(549 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0150 - 2244757-2245303,2252925-2253277 29 2.4
01_07_0229 + 42161770-42164562 29 2.4
04_04_0487 - 25585229-25585540,25585627-25585745,25586029-255861... 29 3.2
03_01_0222 - 1756769-1756801,1756889-1756917,1756975-1757859,175... 28 4.3
01_01_0774 - 6004040-6004371,6004634-6005215,6005391-6005657,600... 28 4.3
04_04_1258 + 32165918-32166041,32167218-32167384,32167569-321677... 28 5.6
01_01_0285 - 2360799-2362631 28 5.6
03_05_0718 - 27100882-27100929,27101197-27101303,27101446-271015... 27 9.9
01_06_1556 - 38222071-38222708,38222795-38222822,38222950-382230... 27 9.9
>09_01_0150 - 2244757-2245303,2252925-2253277
Length = 299
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 325 VLSNKPPMYSFLKEWFLLP 381
V + PP Y+FLKE FLLP
Sbjct: 4 VQRSTPPFYNFLKEGFLLP 22
>01_07_0229 + 42161770-42164562
Length = 930
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 61 CLRLNDAIIKRHVLVLSEYADLKYLGFEKYKFFEYVIFQFCNDPHLCKI 207
CL+LN +IK + + + LKYL F E + + P+L K+
Sbjct: 556 CLKLNQTLIKSLPVAIGQLTKLKYLNLSYMDFLEKIPYGVI--PNLSKL 602
>04_04_0487 -
25585229-25585540,25585627-25585745,25586029-25586194,
25586295-25586427,25586527-25586618,25586739-25586925,
25587183-25587271,25587318-25587379,25587462-25587567,
25587754-25588052,25588181-25588288,25588369-25588439,
25588792-25588871
Length = 607
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +1
Query: 229 CMQIFKAPADNMCDIRHNIKRAFKTPVLGHMCVLSNKPPMYSFLKEWF---LLPHYKV 393
CM+ + + +I ++ +F P +G + + N P +++ L +F +P+YKV
Sbjct: 469 CMEAKEPVPEEPYEISSDVHGSFDGPRMGRLRAMQNAPHLFAGLTFYFSGHFMPNYKV 526
>03_01_0222 -
1756769-1756801,1756889-1756917,1756975-1757859,
1758244-1759273,1759354-1759401,1759626-1760480
Length = 959
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 43 LQSKWICLRLNDAIIKRHVLVLSEYADLKYLGFE 144
LQ W RL + I+KR + + DLKYL E
Sbjct: 860 LQPSWGFQRLKEEIVKRFGISQDTHVDLKYLDDE 893
>01_01_0774 -
6004040-6004371,6004634-6005215,6005391-6005657,
6005845-6006163
Length = 499
Score = 28.3 bits (60), Expect = 4.3
Identities = 19/70 (27%), Positives = 36/70 (51%)
Frame = +1
Query: 82 IIKRHVLVLSEYADLKYLGFEKYKFFEYVIFQFCNDPHLCKIIENNYNYCMQIFKAPADN 261
II+RH L ++ L + E + + + F + D K+I N ++ +++F+ A
Sbjct: 397 IIRRHGLASDLFSCLLFNELEAFNPRDQLAFAYVRDQMSPKVIMNMFD--VEVFEQIA-- 452
Query: 262 MCDIRHNIKR 291
+ RHN+KR
Sbjct: 453 -VEYRHNLKR 461
>04_04_1258 +
32165918-32166041,32167218-32167384,32167569-32167769,
32168472-32168631,32168729-32168942,32169160-32169307
Length = 337
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +1
Query: 94 HVLVLSEYADLKYLGFEKYKFFEYVIFQFCNDPHLCKIIENNYNYCMQIF 243
HVL ++D++YL EK + Y + + + CK+ E N + +F
Sbjct: 143 HVLDEDSWSDVEYLTKEKPPAWAYSVSKVLMEKAACKLAEENNISLITVF 192
>01_01_0285 - 2360799-2362631
Length = 610
Score = 27.9 bits (59), Expect = 5.6
Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Frame = +1
Query: 100 LVLSEYADLKYLGFEKYKFFEYVIFQFCNDPHLCKIIENNYNYCMQIFKAPADNMCDIRH 279
L+++ + Y+ E Y+FF ++ + +C+ + N ++ + + P +C
Sbjct: 189 LLVTRLVIVWYIFLESYQFFTFIFSDWHKVKMMCRYVRNE-SWHRALMEVPLKVLCHF-S 246
Query: 280 NIKRAFKTPVLGHMCVLSNKPPMY--SFLKEWF 372
I R +K +G +L N P + +FL WF
Sbjct: 247 TITRYWK-GTIGQYFLLDNIHPHWIKTFL-SWF 277
>03_05_0718 -
27100882-27100929,27101197-27101303,27101446-27101593,
27102195-27102328,27102608-27102929
Length = 252
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -2
Query: 344 GGLLLSTHMWPNTGVLNARLILCLMSHMLSAGALNICI 231
GG+ +S +WP+ G A +L M M++ +++ I
Sbjct: 95 GGISVSDVLWPSAGAFLAMAVLGRMDQMMAYKGVSLTI 132
>01_06_1556 -
38222071-38222708,38222795-38222822,38222950-38223070,
38223206-38223318,38223424-38223506,38223868-38223930,
38224100-38224254,38224411-38224580,38225101-38225189,
38225304-38225496,38225655-38225779,38226069-38226475,
38226855-38226919,38227414-38227692,38227772-38227845,
38228241-38228292,38228366-38228473,38228871-38228972,
38229100-38229173,38229262-38229435,38229667-38229771,
38229867-38229977,38230364-38230487
Length = 1150
Score = 27.1 bits (57), Expect = 9.9
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +1
Query: 178 FCNDPHLCKIIEN-NYNYCMQIFKAPADNMCDIRHNIKRAFKTPVLGHMCVLSNKPPMYS 354
FC DP L +II ++C APA + ++ + K ++GH +L Y
Sbjct: 331 FCLDPPLQEIIGTWECSWCKSN-AAPAVKVTEVLTSKKIQ---RLVGHRRILQEADFQYQ 386
Query: 355 FLKEWFLLPHY 387
FL +W L H+
Sbjct: 387 FLVKWQSLSHH 397
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,905,984
Number of Sequences: 37544
Number of extensions: 328988
Number of successful extensions: 771
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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