Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19b06
         (549 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32176| Best HMM Match : Keratin_B2 (HMM E-Value=0.53)               29   3.3  
SB_8524| Best HMM Match : Keratin_B2 (HMM E-Value=0.53)                29   3.3  
SB_2538| Best HMM Match : YTV (HMM E-Value=0.0015)                     28   4.4  
SB_24208| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_8915| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.6  
SB_7049| Best HMM Match : TF_Otx (HMM E-Value=1.6)                     27   7.6  
SB_54752| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_32176| Best HMM Match : Keratin_B2 (HMM E-Value=0.53)
          Length = 194

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
 Frame = +2

Query: 182 ATTRTCARL*KTTTITVCKYLKRPPTTCATSGTILNAHS--------KRQCWA-TCVCLA 334
           AT  T  +    T  TV    K     CAT  T  N +S          +C++ TC  +A
Sbjct: 31  ATVATNTKCYSATRATVATNTKCYSVMCATVATKTNCYSATRATVATNTKCYSVTCATVA 90

Query: 335 TNRQCIRFLKNGFCCHTTKWSLSKANL 415
           TN +C    +     +T  +S ++A +
Sbjct: 91  TNTKCYSATRATVATNTKCYSATRATV 117


>SB_8524| Best HMM Match : Keratin_B2 (HMM E-Value=0.53)
          Length = 194

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
 Frame = +2

Query: 182 ATTRTCARL*KTTTITVCKYLKRPPTTCATSGTILNAHS--------KRQCWA-TCVCLA 334
           AT  T  +    T  TV    K     CAT  T  N +S          +C++ TC  +A
Sbjct: 31  ATVATNTKCYSATRATVATNTKCYSVMCATVATKTNCYSATRATVATNTKCYSVTCATVA 90

Query: 335 TNRQCIRFLKNGFCCHTTKWSLSKANL 415
           TN +C    +     +T  +S ++A +
Sbjct: 91  TNTKCYSATRATVATNTKCYSATRATV 117


>SB_2538| Best HMM Match : YTV (HMM E-Value=0.0015)
          Length = 779

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 22/78 (28%), Positives = 31/78 (39%)
 Frame = +2

Query: 182 ATTRTCARL*KTTTITVCKYLKRPPTTCATSGTILNAHSKRQCWATCVCLATNRQCIRFL 361
           AT  T  +    T  TV    K     CAT  T    +S     ATC  +ATN +C    
Sbjct: 316 ATMATSTKCYSVTCPTVATNTKGYSVMCATVATNTKCYS-----ATCATVATNTKCYSAT 370

Query: 362 KNGFCCHTTKWSLSKANL 415
           +     +T  +S + A +
Sbjct: 371 RATVATNTKCYSATCATM 388


>SB_24208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 463

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 415 LTWGFPHVVVFDLDSTL 465
           LTWGFP V  FD+ S +
Sbjct: 178 LTWGFPVVACFDMTSAI 194


>SB_8915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 482

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/63 (19%), Positives = 28/63 (44%)
 Frame = +1

Query: 349 YSFLKEWFLLPHYKVVSLKSESLTWGFPHVVVFDLDSTLITEEEQIQIRDSFVYDSLQEL 528
           Y   + W  +   ++ ++    ++ G P     D DS  + E +  + +  FV+D L + 
Sbjct: 114 YKCHEAWLAVRDERIANINGPFVSTGKPSPSSIDFDSKKVAEYQSSEGKKIFVFDDLYDK 173

Query: 529 HEM 537
            ++
Sbjct: 174 EDL 176


>SB_7049| Best HMM Match : TF_Otx (HMM E-Value=1.6)
          Length = 235

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -1

Query: 528 QFLQAVIHKRISNLNLLLFGYESAVQIEHDHVRKS 424
           +FL + +H+R+  L  LLF  ES +Q+   H RK+
Sbjct: 96  EFLWSPMHQRL--LGDLLFAIESDLQVWRSHTRKT 128


>SB_54752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 792

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +1

Query: 181 CNDPHLCKIIENNYNYCMQIFKAPADNMCDIRHNIKRAFKTPVLGHMCVLSNKPPMYSFL 360
           C   +LCKII++NY + +  F     N+ D+   I + F+T  L ++     K  +Y+F 
Sbjct: 258 CLTNYLCKIIKDNYLWQLIDFPTRGRNILDLILTIDQ-FRTR-LEYLKKTKTKRVVYNFK 315

Query: 361 K-EW 369
           + +W
Sbjct: 316 RADW 319


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,020,014
Number of Sequences: 59808
Number of extensions: 417596
Number of successful extensions: 1038
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)