Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19b05
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0812 + 23383704-23384143,23384902-23385247                      360   e-100
06_01_0811 - 6113491-6113925,6114079-6114185,6114569-6114788,611...    33   0.22 
07_01_1201 - 11419851-11419913,11420090-11420311                       32   0.38 
03_03_0091 - 14371528-14372661                                         30   2.0  
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26...    29   2.7  
02_05_0812 + 31942591-31942758,31943415-31943491,31944169-319443...    29   4.7  
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555...    29   4.7  
08_02_0253 - 14869109-14869146,14869424-14869710,14869848-14870167     28   6.2  
04_01_0618 - 8094991-8097288                                           28   8.2  
03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922     28   8.2  

>12_02_0812 + 23383704-23384143,23384902-23385247
          Length = 261

 Score =  360 bits (886), Expect = e-100
 Identities = 158/220 (71%), Positives = 188/220 (85%)
 Frame = +2

Query: 38  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 217
           MGRVIRAQRKGAGSVF SHT  RKG  + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAK 60

Query: 218 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 397
           V FR P+++K +KELF+A EG+YTGQFVYCG++ATL +GNV+P+ ++PEG +VCN+E  +
Sbjct: 61  VTFRHPFRYKHQKELFVAAEGMYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHV 120

Query: 398 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPIL 577
           GDRG  ARASG++A VI HNPD   +R+KLPSGAKK++PSS R M+G VAGGGR +KP+L
Sbjct: 121 GDRGVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRAMIGQVAGGGRTEKPML 180

Query: 578 KAGRAYHKYKVKRNCWPYVRGVAMNPVXHPHGGGNHQHIG 697
           KAG AYHKY+VKRNCWP VRGVAMNPV HPHGGGNHQHIG
Sbjct: 181 KAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 220


>06_01_0811 -
           6113491-6113925,6114079-6114185,6114569-6114788,
           6115112-6115199,6115301-6115431,6115924-6116099,
           6116465-6116529,6117014-6117094,6117219-6117358,
           6117446-6117532,6117614-6117827,6118102-6118260,
           6118860-6118936,6119629-6119796
          Length = 715

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 547 WRWTY*QTYFESWKGIPQVQG 609
           W WTY  T+F SW  +P +QG
Sbjct: 70  WSWTYWSTFFLSWSIVPTLQG 90


>07_01_1201 - 11419851-11419913,11420090-11420311
          Length = 94

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = -2

Query: 564 SIRPPPATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSS 385
           ++ PPP  +P +P     R+   P G        +G  P        A  R+P +P+F S
Sbjct: 12  ALLPPPPPLPALPQGQQWRS-TGPTGKLCFCSFPAGALPPAAGAGQPAPDRQPATPLFPS 70

Query: 384 RL 379
           R+
Sbjct: 71  RV 72


>03_03_0091 - 14371528-14372661
          Length = 377

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
 Frame = -2

Query: 552 PPATIPTMPLLLDGRTFLAPDGS-FTLVRLASGLCPITVAKFPEARARRP-LSPIFSSRL 379
           PPA  P      D      P G+  T      G+ P + A    A A    L+P+F   +
Sbjct: 254 PPAPAPAPVKAEDALPHFFPQGAAVTATAHVHGVDPASAAASAAANAEGGILAPLFKEMV 313

Query: 378 HTMVPSGIAPTGITFP 331
             M+ +G+AP  +  P
Sbjct: 314 RAMLTAGMAPPSLEPP 329


>06_01_0026 +
           265755-265968,267319-267468,267694-267738,267786-268460,
           268779-268843,268854-269073,269163-269438,269547-269663,
           269776-269853,269930-270184,270235-270323,270403-270816
          Length = 865

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +1

Query: 424 LWKLRHCDWT 453
           LWK RHCDWT
Sbjct: 73  LWKCRHCDWT 82


>02_05_0812 +
           31942591-31942758,31943415-31943491,31944169-31944327,
           31944559-31944772,31944849-31944935,31945022-31945161,
           31945380-31945460,31945948-31946012,31946219-31946394,
           31947212-31947342,31947438-31947525,31947671-31947884,
           31948206-31948312,31948456-31948953
          Length = 734

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 547 WRWTY*QTYFESWKGIPQVQG 609
           W W+Y  T+  +W  +P +QG
Sbjct: 70  WSWSYWSTFILTWAVVPTIQG 90


>01_07_0112 -
           41149461-41151674,41151688-41153265,41154344-41155507,
           41155807-41156293,41156603-41156759,41157303-41157378
          Length = 1891

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -3

Query: 455 CVQSQWRSFQRHVPDDLYHPFSLQDCTQWY 366
           C    W++   H+P  L H  +  +C  WY
Sbjct: 73  CSCGLWKATTHHLPSALCHGLNYVNCAMWY 102


>08_02_0253 - 14869109-14869146,14869424-14869710,14869848-14870167
          Length = 214

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -2

Query: 654 GFMATPRTYGQQLRLTLYLWYALPAFKIGLSIRPPPATIPTMPLL 520
           G +  P  +G + ++T +L   LP  ++ L +R      PT+PLL
Sbjct: 91  GLLRRPSRHGSRQQVTWFLETYLPGTELTLPLRYKEFPGPTLPLL 135


>04_01_0618 - 8094991-8097288
          Length = 765

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 229 RSIQVQDKEGALHCSRRALHRPICLLW 309
           R  Q+ D++  + C+ R   +P CLLW
Sbjct: 434 RRNQMVDQQSVIWCAARMTKKPNCLLW 460


>03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922
          Length = 147

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +2

Query: 455 NPDAKRTRVKLPS--GAKKVLPSSNRGMVGIVAGGGRIDKPI 574
           +P + RTR   PS  GA K    ++   +G+  GG R+  PI
Sbjct: 45  SPTSTRTRTSTPSAPGAAKAASPNHVRAIGVREGGARLVGPI 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,387,355
Number of Sequences: 37544
Number of extensions: 493871
Number of successful extensions: 1346
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1346
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)