Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19b03
         (552 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B) cont...   143   6e-35
At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S ...   141   3e-34
At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C) cont...   134   3e-32
At1g01010.1 68414.m00001 no apical meristem (NAM) family protein...    28   3.6  
At1g08590.1 68414.m00952 CLAVATA1 receptor kinase (CLV1) similar...    28   4.8  
At5g36210.1 68418.m04365 expressed protein                             27   6.3  
At5g34930.1 68418.m04119 arogenate dehydrogenase identical to ar...    27   8.3  

>At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B)
           contains similarity to 40S ribosomal protein S10
          Length = 180

 Score =  143 bits (347), Expect = 6e-35
 Identities = 78/163 (47%), Positives = 101/163 (61%), Gaps = 6/163 (3%)
 Frame = +1

Query: 40  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 219
           M++ + NR  I +YLFKEGV+ AKKD++ P+H  +E +PNLQVIK MQS KS+ YV+E F
Sbjct: 1   MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETF 60

Query: 220 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVG-RPDAPARS---- 384
           AW H+YW+LTNEGI++LR +L+LP EIVPATLK+  +      G  G RP  P R     
Sbjct: 61  AWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGGGGDRPRGPPRGDGER 120

Query: 385 -AEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGR 510
              DR  YR  P + G   +  KA   P      F+GG G  R
Sbjct: 121 RFGDRDGYRGGPKSGG--EYGDKAG-APADYQPGFRGGAGGAR 160


>At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S
           ribosomal protein S10 - Lumbricus rubellus, PID:e1329701
          Length = 177

 Score =  141 bits (341), Expect = 3e-34
 Identities = 77/158 (48%), Positives = 100/158 (63%), Gaps = 3/158 (1%)
 Frame = +1

Query: 40  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 219
           M++ + NR  I +YLFKEGV  AKKD++ PKH  ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1   MIISENNRREICKYLFKEGVCFAKKDFNLPKHPLID-VPNLQVIKLMQSFKSKEYVRETF 59

Query: 220 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT-ETVRRGPVG-RPDAPARSAED 393
           AW H+YW+LTNEGIE+LR +L+LP ++VPATLK+S +       GP G R   P RS  D
Sbjct: 60  AWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRQRGPPRSDGD 119

Query: 394 RSAY-RRTPAAPGVAPHDKKADVGPGSADLEFKGGYGR 504
           R  +  R     G    D+K    P      F+GG GR
Sbjct: 120 RPRFGDRDGYRGGPRGGDEKGG-APADFQPSFQGGGGR 156


>At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C)
           contains similarity to 40S ribosomal protein S10
          Length = 179

 Score =  134 bits (325), Expect = 3e-32
 Identities = 77/167 (46%), Positives = 100/167 (59%), Gaps = 11/167 (6%)
 Frame = +1

Query: 40  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 219
           M++ + NR  I +YLFKEGV  AKKD++  KH  ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1   MIISEANRKEICKYLFKEGVCFAKKDFNLAKHPLID-VPNLQVIKLMQSFKSKEYVRETF 59

Query: 220 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT-ETVRRGPVG-RPDAPARSA-- 387
           AW H+YW+LTNEGIE+LR +L+LP ++VPATLK+S +       GP G R   P      
Sbjct: 60  AWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRSRGPRHEGGD 119

Query: 388 ----EDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKG---GYGRG 507
                DR  YR  P A G    +K     P      F+G   G+GRG
Sbjct: 120 RPRFGDRDGYRAGPRAGGEFGGEKGG--APADYQPSFQGSGRGFGRG 164


>At1g01010.1 68414.m00001 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to NAC domain protein NAM GB: AAD17313
           GI:4325282 from [Arabidopsis thaliana]
          Length = 429

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +1

Query: 127 PKHTELEKIPNLQVIKAMQSLKSRGYVKEQ 216
           P HT ++ IP+L +I+ + + K++   K+Q
Sbjct: 333 PGHTRIDDIPSLNIIEPLHNYKAQEQPKQQ 362


>At1g08590.1 68414.m00952 CLAVATA1 receptor kinase (CLV1) similar to
           receptor-like protein kinase (Ipomoea nil) (U77888)
          Length = 1029

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 478 LEFKGGYGRGRPAS*FKQ*KNLK 546
           L+F+GGY  G   S FK  KNLK
Sbjct: 178 LDFRGGYFEGSVPSSFKNLKNLK 200


>At5g36210.1 68418.m04365 expressed protein
          Length = 676

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +1

Query: 37  KMLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKH 135
           K++ P Q+R  IYE L K+G+ VA  +Y   +H
Sbjct: 603 KVVTPDQSR-KIYEALKKKGLPVALVEYEGEQH 634


>At5g34930.1 68418.m04119 arogenate dehydrogenase identical to
           arogenate dehydrogenase GI:16903098 from [Arabidopsis
           thaliana]; contains Pfam profile: PF02153: prephenate
           dehydrogenase
          Length = 640

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 132 LRCMIVFFGHHDSLFKEVLINSNTVLFGH 46
           LR  I+ FG++     E LI+   +LF H
Sbjct: 53  LRIAIIGFGNYGQFLAETLISQGHILFAH 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,280,024
Number of Sequences: 28952
Number of extensions: 219390
Number of successful extensions: 611
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)