Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19b02
         (630 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000023C9B6 Cluster: hypothetical protein FG00211.1; ...    37   0.46 
UniRef50_Q4SKZ5 Cluster: Chromosome 17 SCAF14563, whole genome s...    35   1.9  
UniRef50_Q75DX0 Cluster: ABL097Cp; n=1; Eremothecium gossypii|Re...    34   2.4  
UniRef50_UPI000065E81A Cluster: Homolog of Homo sapiens "Splice ...    34   3.2  
UniRef50_Q6MDA6 Cluster: Putative serine protease; n=1; Candidat...    34   3.2  
UniRef50_Q5PBJ2 Cluster: Glutamine synthetase; n=6; Anaplasmatac...    33   7.5  

>UniRef50_UPI000023C9B6 Cluster: hypothetical protein FG00211.1;
           n=1; Gibberella zeae PH-1|Rep: hypothetical protein
           FG00211.1 - Gibberella zeae PH-1
          Length = 285

 Score = 36.7 bits (81), Expect = 0.46
 Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
 Frame = +2

Query: 140 GQFCVIYFFLLTTSLLV--DNIRSGIKPRAFEK*RDVDVKNAGAIILIDAVMTARILDLG 313
           G+ C +     TT L V  D I   I+        +  + NAG II+I  ++   IL L 
Sbjct: 110 GEDCSLISVRKTTRLFVIGDFITFNIQGNGGGLLANEKLANAGKIIVIVGLIAQIILFLA 169

Query: 314 --VCCN-YHRRDRAVCRKSKTPTPQDVSWHSSVEPLFRT 421
             VCC  +HRR R   R+S TP   ++ W + +  L+ T
Sbjct: 170 FVVCCVVFHRRFRVHLRQSHTPV--EIRWEAYLNMLYMT 206


>UniRef50_Q4SKZ5 Cluster: Chromosome 17 SCAF14563, whole genome
           shotgun sequence; n=5; Tetraodontidae|Rep: Chromosome 17
           SCAF14563, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 760

 Score = 34.7 bits (76), Expect = 1.9
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -1

Query: 522 ITARGVRYKSATAHCD*TV-PVNWSLISRSHEYNYVLNNGSTELCQETSCGVGVLL 358
           +T RG+R K     C       +WSL     +Y++V NN ST++    S  +GV L
Sbjct: 391 VTYRGIRRKGNANECSLGWNDKSWSLYCSDSKYSFVHNNKSTDIAGPVSSRIGVYL 446


>UniRef50_Q75DX0 Cluster: ABL097Cp; n=1; Eremothecium gossypii|Rep:
           ABL097Cp - Ashbya gossypii (Yeast) (Eremothecium
           gossypii)
          Length = 119

 Score = 34.3 bits (75), Expect = 2.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 320 CNYHRRDRAVCRKSKTPTPQDVSWHSSVE 406
           C++ +RD AVC K K P  QD+  H S +
Sbjct: 37  CDFRQRDLAVCIKQKVPVVQDIMKHCSAQ 65


>UniRef50_UPI000065E81A Cluster: Homolog of Homo sapiens "Splice
           Isoform 1 of Tripartite motif protein 16; n=1; Takifugu
           rubripes|Rep: Homolog of Homo sapiens "Splice Isoform 1
           of Tripartite motif protein 16 - Takifugu rubripes
          Length = 446

 Score = 33.9 bits (74), Expect = 3.2
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -1

Query: 522 ITARGVRYKSATAHCD*TV-PVNWSLISRSHEYNYVLNNGSTELCQETSCGVGVLL 358
           +T RG+R K     C       +WSL     +Y++V NN ST++    S  +GV L
Sbjct: 360 VTYRGIRRKGNGNECSLGWNDKSWSLYCSDSKYSFVHNNKSTDIAGPVSSRIGVYL 415


>UniRef50_Q6MDA6 Cluster: Putative serine protease; n=1; Candidatus
           Protochlamydia amoebophila UWE25|Rep: Putative serine
           protease - Protochlamydia amoebophila (strain UWE25)
          Length = 410

 Score = 33.9 bits (74), Expect = 3.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 615 THPPIFMTLFQGTQVHMRHPLRRKPLLLVEKITARGVRY 499
           TH P ++   Q  QV M H L + P+L+ EK+T   + Y
Sbjct: 218 THKPFYINSSQVRQVDMMHTLGQYPILITEKLTMIEIPY 256


>UniRef50_Q5PBJ2 Cluster: Glutamine synthetase; n=6;
           Anaplasmataceae|Rep: Glutamine synthetase - Anaplasma
           marginale (strain St. Maries)
          Length = 275

 Score = 32.7 bits (71), Expect = 7.5
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = -1

Query: 579 TQVHMRHPLRRKPLLLVE-KITARGVRYKSA----TAHCD*TVPVNWSLISRSHEYNYVL 415
           T  H+R+ L   PL+ VE +   RGV  K+      A  +   P+NWS+   +HE  Y L
Sbjct: 10  TLSHLRNKLGAHPLIGVELEFYVRGVEDKALEELFAAFAEDVRPLNWSIAKETHESQYEL 69


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 607,144,493
Number of Sequences: 1657284
Number of extensions: 11628038
Number of successful extensions: 28534
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 27560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28527
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46466611856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)