Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19b02
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    27   2.2  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    26   3.9  
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git...    26   5.2  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    25   9.0  

>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 17/51 (33%), Positives = 31/51 (60%)
 Frame = -3

Query: 352 THSTIATMIIATNS*IKNSSGHDSVDENDRACIFYIDVPSLFKSTWFYPTS 200
           +HS+ +++ I  +S + N++ H SV ++ ++  F + VPS   ST  Y TS
Sbjct: 474 SHSSASSLPITPSSYLSNTTLHSSV-QSSQSSQFTVSVPS---STQSYSTS 520


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +2

Query: 320 CNYHRRDRAVCRKSKTPTPQDVSWHSSVEPLFRT*LYS*DREINDQFTGT 469
           C  +    A  +   + +P ++S HS+ +PL  T + S   +  D F+G+
Sbjct: 63  CEGYPNSAAQMQAMGSVSPPELSVHSAQQPLIPTSIASSSAQTGDTFSGS 112


>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
           Git5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 305

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -3

Query: 619 LHTP--ADFHDAVPGYSSAHASPPSTETVAAGGKNN 518
           LHT     F +A   +    A  PST+++AAGG NN
Sbjct: 50  LHTSNKVAFFEAPSVWIMTCAFSPSTKSIAAGGLNN 85


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 549 RKPLLLVEKITARGVRYKSATAHCD*TVPVNWSLISR 439
           R P  L E+  A  V ++  T H D  V ++WS  SR
Sbjct: 123 RTPNSLEEREFAPFVLHREYTGHFDDIVSISWSADSR 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,532,015
Number of Sequences: 5004
Number of extensions: 49069
Number of successful extensions: 101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)