Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19b02
         (630 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42485| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 30   1.3  
SB_7904| Best HMM Match : F420_oxidored (HMM E-Value=9.94922e-44)      29   4.1  
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  

>SB_42485| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1565

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = +1

Query: 481 MRCRTLVPNATRSYFFHQQQRFPSK 555
           M CRT   NAT S FF +   FPSK
Sbjct: 386 MDCRTNDKNATTSLFFRKNPTFPSK 410


>SB_7904| Best HMM Match : F420_oxidored (HMM E-Value=9.94922e-44)
          Length = 851

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 363 RHLRRRMSPGIVQWNRCLEHNYTREIVRLMTNLPVPFNRNALSHSCTER 509
           RHL   ++ GI   +   +H     ++RLM NLP    + A + SC E+
Sbjct: 443 RHLVVSVAAGI-PLSSFSKHYGLERVIRLMPNLPCSVKQGAAAFSCGEK 490


>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2848

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = -3

Query: 622  LLHTPADFHDAVPGYSSAHASPPSTETVAAGGKNNCAWRSVQECDSALRLNGT 464
            L  TP    D +PGY  +  S   TE   A  K   A++ V +     RL  T
Sbjct: 1894 LEQTPPPTSDRIPGYEDSEGS--DTENEQAITKRKTAFQDVSDVHGVARLQDT 1944


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,551,340
Number of Sequences: 59808
Number of extensions: 388010
Number of successful extensions: 1076
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)