Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19a23
(634 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 118 4e-27
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 118 4e-27
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 116 2e-26
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 115 2e-26
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 112 2e-25
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 111 4e-25
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 111 4e-25
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 111 4e-25
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 110 9e-25
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 108 3e-24
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 108 3e-24
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 107 6e-24
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 107 6e-24
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 102 2e-22
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 94 8e-20
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 68 4e-19
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 50 4e-15
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 74 9e-14
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 70 1e-12
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 70 1e-12
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 69 3e-12
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 67 8e-12
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 67 8e-12
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 67 8e-12
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 66 1e-11
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 66 2e-11
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 66 2e-11
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 66 2e-11
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 66 2e-11
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 65 3e-11
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 64 7e-11
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 63 2e-10
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 63 2e-10
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 63 2e-10
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 63 2e-10
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 62 2e-10
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 62 3e-10
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 62 3e-10
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 62 4e-10
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 62 4e-10
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 61 5e-10
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 61 5e-10
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 61 5e-10
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 61 7e-10
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 61 7e-10
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 61 7e-10
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 61 7e-10
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 61 7e-10
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 60 9e-10
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 60 9e-10
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 60 9e-10
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 60 9e-10
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 60 2e-09
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 60 2e-09
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 60 2e-09
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 59 2e-09
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 59 2e-09
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 59 2e-09
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 59 2e-09
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 59 3e-09
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 59 3e-09
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 58 5e-09
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 58 5e-09
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 58 5e-09
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 57 8e-09
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 57 8e-09
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 57 8e-09
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 57 1e-08
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 56 1e-08
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 56 1e-08
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 56 1e-08
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 56 1e-08
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 56 3e-08
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 55 3e-08
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 55 3e-08
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 55 3e-08
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 55 3e-08
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 55 3e-08
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 55 5e-08
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 55 5e-08
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 55 5e-08
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 55 5e-08
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 54 8e-08
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 54 8e-08
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 54 8e-08
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 53 2e-07
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 53 2e-07
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 53 2e-07
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 52 2e-07
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 52 2e-07
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 52 3e-07
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 52 3e-07
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 51 6e-07
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 51 6e-07
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 51 6e-07
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 51 6e-07
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 51 6e-07
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 51 6e-07
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 51 6e-07
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 50 1e-06
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 50 1e-06
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 50 1e-06
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 50 2e-06
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 50 2e-06
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 50 2e-06
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 50 2e-06
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 49 2e-06
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 49 2e-06
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 49 3e-06
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 48 4e-06
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 48 4e-06
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 48 4e-06
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 48 4e-06
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 48 5e-06
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 48 5e-06
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 48 7e-06
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 48 7e-06
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 48 7e-06
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 47 9e-06
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 47 9e-06
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 47 9e-06
At2g47310.1 68415.m05906 flowering time control protein-related ... 47 9e-06
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 47 1e-05
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 47 1e-05
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 47 1e-05
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 47 1e-05
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 46 2e-05
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 46 2e-05
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 46 2e-05
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 46 2e-05
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 46 3e-05
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 45 5e-05
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 45 5e-05
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 44 6e-05
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 44 6e-05
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 44 6e-05
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 44 6e-05
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 44 8e-05
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 44 8e-05
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 44 8e-05
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 44 1e-04
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 44 1e-04
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 43 1e-04
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 42 3e-04
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 42 3e-04
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 42 3e-04
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 42 3e-04
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 42 3e-04
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 42 3e-04
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 42 3e-04
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 42 3e-04
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 42 3e-04
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 42 4e-04
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 41 6e-04
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 41 6e-04
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 41 8e-04
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 40 0.001
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 40 0.001
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 40 0.001
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 40 0.002
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 40 0.002
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 40 0.002
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 40 0.002
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 40 0.002
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 40 0.002
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 39 0.002
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 39 0.003
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 38 0.004
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 38 0.004
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 38 0.004
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 38 0.004
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 38 0.004
At5g51300.2 68418.m06360 splicing factor-related contains simila... 38 0.006
At5g51300.1 68418.m06359 splicing factor-related contains simila... 38 0.006
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 38 0.007
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 38 0.007
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 38 0.007
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 37 0.010
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 37 0.013
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 36 0.017
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 36 0.017
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.017
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.017
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.017
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 36 0.022
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 36 0.022
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 36 0.022
At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing ... 36 0.030
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 35 0.039
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 35 0.052
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 35 0.052
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 35 0.052
At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing ... 34 0.068
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 34 0.068
At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing ... 34 0.090
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 34 0.090
At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein ... 33 0.12
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 33 0.16
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 33 0.16
At2g42240.1 68415.m05228 RNA recognition motif (RRM)-containing ... 33 0.16
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 33 0.21
At5g16840.1 68418.m01973 RNA recognition motif (RRM)-containing ... 32 0.28
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 32 0.28
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 32 0.28
At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein ... 32 0.36
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 32 0.36
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 32 0.36
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 32 0.36
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 31 0.48
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 31 0.48
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 31 0.48
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 31 0.48
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 31 0.64
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 31 0.64
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 31 0.64
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 31 0.84
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 31 0.84
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 30 1.1
At5g04210.1 68418.m00409 RNA recognition motif (RRM)-containing ... 30 1.1
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 30 1.1
At2g33440.1 68415.m04099 splicing factor family protein similar ... 30 1.1
At1g67950.3 68414.m07762 RNA recognition motif (RRM)-containing ... 30 1.1
At1g67950.1 68414.m07761 RNA recognition motif (RRM)-containing ... 30 1.1
At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing ... 30 1.5
At4g16810.1 68417.m02538 expressed protein similar to vernalizat... 30 1.5
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar... 30 1.5
At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70 (... 29 1.9
At3g18810.1 68416.m02389 protein kinase family protein contains ... 29 1.9
At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing ... 29 1.9
At1g67950.2 68414.m07760 RNA recognition motif (RRM)-containing ... 29 1.9
At2g47390.1 68415.m05915 expressed protein 29 2.6
At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) famil... 29 2.6
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 29 3.4
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 29 3.4
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 28 4.5
At5g03480.1 68418.m00304 expressed protein ; expression support... 28 4.5
At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing ... 28 4.5
At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) famil... 28 4.5
At5g22830.1 68418.m02669 magnesium transporter CorA-like family ... 28 5.9
At4g24420.1 68417.m03501 RNA recognition motif (RRM)-containing ... 28 5.9
At5g27640.1 68418.m03311 eukaryotic translation initiation facto... 27 7.8
At5g25780.1 68418.m03060 eukaryotic translation initiation facto... 27 7.8
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ... 27 7.8
At4g17720.1 68417.m02646 RNA recognition motif (RRM)-containing ... 27 7.8
At3g21215.1 68416.m02681 RNA-binding protein, putative contains ... 27 7.8
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 27 7.8
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 27 7.8
At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) famil... 27 7.8
At1g04950.2 68414.m00493 TATA box-binding protein-associated fac... 27 7.8
At1g04950.1 68414.m00492 TATA box-binding protein-associated fac... 27 7.8
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 118 bits (283), Expect = 4e-27
Identities = 64/168 (38%), Positives = 99/168 (58%), Gaps = 11/168 (6%)
Frame = +2
Query: 158 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 337
G S++ N G K+F+GGL +TT+ HFG YGEI + D +TG+ R
Sbjct: 2 GSRSRNDNFQSGDGASPG-KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPR 60
Query: 338 GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA--KARHG---------KIFVGGLSSE 484
GF FI F P +DKV+ H IN K+V+ K+ K G KIFVGG+ S
Sbjct: 61 GFGFITFADPSVVDKVIE-DTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPST 119
Query: 485 ISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 628
+++DE+++FF+++G ++E ++ D N+ +GF F+ F+SE+VV++LL
Sbjct: 120 VTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELL 167
Score = 65.7 bits (153), Expect = 2e-11
Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 6/111 (5%)
Frame = +2
Query: 212 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 391
+K+FVGG+ T+ EL+D F YG + V D T RSRGF F++F + E +D++++
Sbjct: 109 KKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168
Query: 392 AG------EHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 526
G + + KK +PKK+ R + S+D ++ +G
Sbjct: 169 KGNMIDMADTQVEIKKAEPKKSLNRSPPSYGSHPRGRSSNDSYASYGGPYG 219
Score = 44.8 bits (101), Expect = 5e-05
Identities = 21/63 (33%), Positives = 35/63 (55%)
Frame = +2
Query: 443 ARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVND 622
A GKIF+GGL + ++ F ++G I + + D+ Q +GF FITF VV+
Sbjct: 16 ASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDK 75
Query: 623 LLK 631
+++
Sbjct: 76 VIE 78
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 118 bits (283), Expect = 4e-27
Identities = 64/168 (38%), Positives = 99/168 (58%), Gaps = 11/168 (6%)
Frame = +2
Query: 158 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 337
G S++ N G K+F+GGL +TT+ HFG YGEI + D +TG+ R
Sbjct: 2 GSRSRNDNFQSGDGASPG-KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPR 60
Query: 338 GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA--KARHG---------KIFVGGLSSE 484
GF FI F P +DKV+ H IN K+V+ K+ K G KIFVGG+ S
Sbjct: 61 GFGFITFADPSVVDKVIE-DTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPST 119
Query: 485 ISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 628
+++DE+++FF+++G ++E ++ D N+ +GF F+ F+SE+VV++LL
Sbjct: 120 VTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELL 167
Score = 60.5 bits (140), Expect = 9e-10
Identities = 25/62 (40%), Positives = 39/62 (62%)
Frame = +2
Query: 212 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 391
+K+FVGG+ T+ EL+D F YG + V D T RSRGF F++F + E +D++++
Sbjct: 109 KKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168
Query: 392 AG 397
G
Sbjct: 169 KG 170
Score = 44.8 bits (101), Expect = 5e-05
Identities = 21/63 (33%), Positives = 35/63 (55%)
Frame = +2
Query: 443 ARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVND 622
A GKIF+GGL + ++ F ++G I + + D+ Q +GF FITF VV+
Sbjct: 16 ASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDK 75
Query: 623 LLK 631
+++
Sbjct: 76 VIE 78
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 116 bits (278), Expect = 2e-26
Identities = 61/166 (36%), Positives = 95/166 (57%), Gaps = 25/166 (15%)
Frame = +2
Query: 206 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 385
D KLFVGG+SWET + +LR+HF YGE+ V D TGR RGF F++F P +D+V
Sbjct: 4 DQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRV 63
Query: 386 MAAGEHTINNKKVDPKKAKARH-------------------------GKIFVGGLSSEIS 490
+ +H+I+ ++VD K+A +R KIFVGGL ++
Sbjct: 64 LQE-KHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLT 122
Query: 491 DDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 628
D+E R +F +G + +V + +D+ N+ +GF F++F+SE V+ +L
Sbjct: 123 DEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVL 168
Score = 68.5 bits (160), Expect = 3e-12
Identities = 35/126 (27%), Positives = 65/126 (51%), Gaps = 3/126 (2%)
Frame = +2
Query: 110 QDITTDNQLNGNAENGGGDSQDHNSAEAPGRD---DDRKLFVGGLSWETTDKELRDHFGA 280
+++ ++ + G + + N++ + G D +K+FVGGL TD+E R +F
Sbjct: 73 REVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEV 132
Query: 281 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKI 460
YG + + + D T R RGF F+ F + +++D V+ H ++ K+V+ K+A +
Sbjct: 133 YGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDANP 192
Query: 461 FVGGLS 478
GG S
Sbjct: 193 GGGGRS 198
Score = 48.4 bits (110), Expect = 4e-06
Identities = 20/60 (33%), Positives = 37/60 (61%)
Frame = +2
Query: 452 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 631
GK+FVGG+S E +D++R F+ +G + + + DK + +GF F+ F V++ +L+
Sbjct: 6 GKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQ 65
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 115 bits (277), Expect = 2e-26
Identities = 67/182 (36%), Positives = 98/182 (53%), Gaps = 9/182 (4%)
Frame = +2
Query: 110 QDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGE 289
+D D + + + E+ SQ H+ G D K+FVGGL+ ETT E HFG YGE
Sbjct: 11 EDEIHDPKPSEDIEDDDDKSQPHSGG---GVDSAGKIFVGGLARETTSAEFLKHFGKYGE 67
Query: 290 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHG----- 454
I + D TG+ RGF F+ + +DKV+ H I K+V+ K+ R
Sbjct: 68 ITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVI-QDNHIIIGKQVEIKRTIPRGSMSSND 126
Query: 455 ----KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVND 622
KIFVGG+ S + DDE + FF +FG + E ++ D + + +GF F+T+ESE +V+
Sbjct: 127 FKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDH 186
Query: 623 LL 628
LL
Sbjct: 187 LL 188
Score = 62.1 bits (144), Expect = 3e-10
Identities = 26/80 (32%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Frame = +2
Query: 212 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 391
+K+FVGG+ D E ++ F +GE++ + D +TGRSRGF F+ +++ + +D ++A
Sbjct: 130 KKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLA 189
Query: 392 AGEH-TINNKKVDPKKAKAR 448
G ++ +V+ KKA+ +
Sbjct: 190 KGNRIELSGTQVEIKKAEPK 209
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/60 (35%), Positives = 35/60 (58%)
Frame = +2
Query: 452 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 631
GKIFVGGL+ E + E F ++G I + + D+ Q +GF F+T+ VV+ +++
Sbjct: 42 GKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ 101
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 112 bits (270), Expect = 2e-25
Identities = 67/186 (36%), Positives = 104/186 (55%), Gaps = 17/186 (9%)
Frame = +2
Query: 119 TTDNQLNGNA--ENGG---GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 283
T D++ NG A + GG S DH + + KLFVGG+SWETT + ++FG +
Sbjct: 31 TFDDRRNGGAAVDTGGIQMKHSVDHRHSSS-SMSSPGKLFVGGVSWETTAETFANYFGKF 89
Query: 284 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPK---------- 433
GE+ + TD TG RGF F+ F +KV+ +H I+++KVD K
Sbjct: 90 GEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE-DHVIDDRKVDLKRTLPRGDKDT 148
Query: 434 --KAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 607
KA ++ KIFVGGL + +DE++N+F +G I+E ++ +D + +GF F+TF++E
Sbjct: 149 DIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTE 208
Query: 608 QVVNDL 625
V+ L
Sbjct: 209 DSVDRL 214
Score = 68.9 bits (161), Expect = 3e-12
Identities = 31/80 (38%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Frame = +2
Query: 212 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 391
RK+FVGGL + EL+++F YG+I + D +TGRSRGF F+ F+ +S+D++ +
Sbjct: 157 RKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFS 216
Query: 392 AGE-HTINNKKVDPKKAKAR 448
G+ H + +K+V+ K+A+ +
Sbjct: 217 DGKVHELGDKQVEIKRAEPK 236
Score = 47.6 bits (108), Expect = 7e-06
Identities = 20/60 (33%), Positives = 35/60 (58%)
Frame = +2
Query: 452 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 631
GK+FVGG+S E + + N+F +FG +++ + D+ +GF F+TF V +L+
Sbjct: 66 GKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLE 125
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 111 bits (267), Expect = 4e-25
Identities = 63/163 (38%), Positives = 95/163 (58%), Gaps = 25/163 (15%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 394
KLF+GG+SW+T ++ LRD+F YG++ + D TGR+RGF FIVF P ++V+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-M 65
Query: 395 GEHTINNKKVDPKKAKAR-------------------HG------KIFVGGLSSEISDDE 499
+H I+ + V+ KKA R HG KIFVGGL S I+++E
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 500 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 628
+N+F +FGTI +V + +D + +GF FITF+S+ V+ +L
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168
Score = 67.7 bits (158), Expect = 6e-12
Identities = 30/76 (39%), Positives = 48/76 (63%)
Frame = +2
Query: 212 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 391
+K+FVGGL T++E +++F +G I + V D NT R RGF FI F + +++D+V+
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 169
Query: 392 AGEHTINNKKVDPKKA 439
H +N K V+ K+A
Sbjct: 170 KTFHELNGKLVEVKRA 185
Score = 48.8 bits (111), Expect = 3e-06
Identities = 21/61 (34%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
Frame = +2
Query: 452 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE----SEQVVN 619
GK+F+GG+S + ++ +R++FS +G ++E + D+ + +GF FI F SE+V+
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIM 65
Query: 620 D 622
D
Sbjct: 66 D 66
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 111 bits (267), Expect = 4e-25
Identities = 63/163 (38%), Positives = 95/163 (58%), Gaps = 25/163 (15%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 394
KLF+GG+SW+T ++ LRD+F YG++ + D TGR+RGF FIVF P ++V+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-M 65
Query: 395 GEHTINNKKVDPKKAKAR-------------------HG------KIFVGGLSSEISDDE 499
+H I+ + V+ KKA R HG KIFVGGL S I+++E
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 500 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 628
+N+F +FGTI +V + +D + +GF FITF+S+ V+ +L
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168
Score = 67.7 bits (158), Expect = 6e-12
Identities = 30/76 (39%), Positives = 48/76 (63%)
Frame = +2
Query: 212 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 391
+K+FVGGL T++E +++F +G I + V D NT R RGF FI F + +++D+V+
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 169
Query: 392 AGEHTINNKKVDPKKA 439
H +N K V+ K+A
Sbjct: 170 KTFHELNGKLVEVKRA 185
Score = 48.8 bits (111), Expect = 3e-06
Identities = 21/61 (34%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
Frame = +2
Query: 452 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE----SEQVVN 619
GK+F+GG+S + ++ +R++FS +G ++E + D+ + +GF FI F SE+V+
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIM 65
Query: 620 D 622
D
Sbjct: 66 D 66
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 111 bits (267), Expect = 4e-25
Identities = 63/163 (38%), Positives = 95/163 (58%), Gaps = 25/163 (15%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 394
KLF+GG+SW+T ++ LRD+F YG++ + D TGR+RGF FIVF P ++V+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-M 65
Query: 395 GEHTINNKKVDPKKAKAR-------------------HG------KIFVGGLSSEISDDE 499
+H I+ + V+ KKA R HG KIFVGGL S I+++E
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 500 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 628
+N+F +FGTI +V + +D + +GF FITF+S+ V+ +L
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168
Score = 67.7 bits (158), Expect = 6e-12
Identities = 30/76 (39%), Positives = 48/76 (63%)
Frame = +2
Query: 212 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 391
+K+FVGGL T++E +++F +G I + V D NT R RGF FI F + +++D+V+
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 169
Query: 392 AGEHTINNKKVDPKKA 439
H +N K V+ K+A
Sbjct: 170 KTFHELNGKLVEVKRA 185
Score = 48.8 bits (111), Expect = 3e-06
Identities = 21/61 (34%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
Frame = +2
Query: 452 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE----SEQVVN 619
GK+F+GG+S + ++ +R++FS +G ++E + D+ + +GF FI F SE+V+
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIM 65
Query: 620 D 622
D
Sbjct: 66 D 66
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 110 bits (264), Expect = 9e-25
Identities = 63/166 (37%), Positives = 96/166 (57%), Gaps = 28/166 (16%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 394
KLF+GG+SW+T ++ L+++FG YG++ + D TGR+RGF FIVF P ++V+
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI-M 74
Query: 395 GEHTINNKKVDPKKAKAR-------------------HG---------KIFVGGLSSEIS 490
+H I+ + V+ KKA R HG KIFVGGL S I+
Sbjct: 75 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSIT 134
Query: 491 DDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 628
+ E +N+F +FGTI +V + +D + +GF FITF+SE+ V+ +L
Sbjct: 135 EAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVL 180
Score = 68.5 bits (160), Expect = 3e-12
Identities = 32/76 (42%), Positives = 46/76 (60%)
Frame = +2
Query: 212 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 391
+K+FVGGL T+ E +++F +G I + V D NT R RGF FI F + ES+D V+
Sbjct: 122 KKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLH 181
Query: 392 AGEHTINNKKVDPKKA 439
H +N K V+ K+A
Sbjct: 182 KTFHELNGKMVEVKRA 197
Score = 47.2 bits (107), Expect = 9e-06
Identities = 17/59 (28%), Positives = 36/59 (61%)
Frame = +2
Query: 452 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 628
GK+F+GG+S + ++ ++ +F ++G ++E + D+T + +GF FI F V ++
Sbjct: 15 GKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI 73
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 108 bits (260), Expect = 3e-24
Identities = 58/160 (36%), Positives = 95/160 (59%), Gaps = 21/160 (13%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 394
KLF+GG+SWET++ LRD+F ++GE+ + D TGR+RGF F+VF P ++V+
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 395 GEHTINNKKVDPKKAKARHG---------------------KIFVGGLSSEISDDEIRNF 511
+H I+ K V+ KKA R KIFVGGL+S +++ E + +
Sbjct: 67 -KHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKY 125
Query: 512 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 631
F++FG I +V + +D + +GF FI+++SE+ V+ +L+
Sbjct: 126 FAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQ 165
Score = 69.7 bits (163), Expect = 1e-12
Identities = 32/83 (38%), Positives = 49/83 (59%)
Frame = +2
Query: 191 APGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 370
+PG + +K+FVGGL+ T+ E + +F +G I + V D T R RGF FI + + E
Sbjct: 99 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 158
Query: 371 SIDKVMAAGEHTINNKKVDPKKA 439
++DKV+ H +N K V+ K A
Sbjct: 159 AVDKVLQKTFHELNGKMVEVKLA 181
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 108 bits (260), Expect = 3e-24
Identities = 58/160 (36%), Positives = 95/160 (59%), Gaps = 21/160 (13%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 394
KLF+GG+SWET++ LRD+F ++GE+ + D TGR+RGF F+VF P ++V+
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 395 GEHTINNKKVDPKKAKARHG---------------------KIFVGGLSSEISDDEIRNF 511
+H I+ K V+ KKA R KIFVGGL+S +++ E + +
Sbjct: 67 -KHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKY 125
Query: 512 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 631
F++FG I +V + +D + +GF FI+++SE+ V+ +L+
Sbjct: 126 FAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQ 165
Score = 69.7 bits (163), Expect = 1e-12
Identities = 32/83 (38%), Positives = 49/83 (59%)
Frame = +2
Query: 191 APGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 370
+PG + +K+FVGGL+ T+ E + +F +G I + V D T R RGF FI + + E
Sbjct: 99 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 158
Query: 371 SIDKVMAAGEHTINNKKVDPKKA 439
++DKV+ H +N K V+ K A
Sbjct: 159 AVDKVLQKTFHELNGKMVEVKLA 181
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 107 bits (257), Expect = 6e-24
Identities = 57/169 (33%), Positives = 97/169 (57%), Gaps = 24/169 (14%)
Frame = +2
Query: 200 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 379
+ D+ KLF+GG+SW+T ++ L+++F ++GE+ + D TGR+RGF F+VF P ++
Sbjct: 2 QSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVA 60
Query: 380 KVMAAGEHTINNKKVDPKKA-----------------------KARHGKIFVGGLSSEIS 490
+++ +H I+ + V+ KKA R KIFVGGL S ++
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120
Query: 491 DDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVND-LLKT 634
+ + + +F +FGT +V + +D + +GF FIT++SE+ V LLKT
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKT 169
Score = 70.1 bits (164), Expect = 1e-12
Identities = 36/99 (36%), Positives = 52/99 (52%)
Frame = +2
Query: 143 NAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 322
N N S S PGR RK+FVGGL T+ + + +F +G + V D N
Sbjct: 87 NMVNRSNSSSIQGSPGGPGRT--RKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHN 144
Query: 323 TGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 439
T R RGF FI + + E+++KV+ H +N K V+ K+A
Sbjct: 145 TQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRA 183
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 107 bits (257), Expect = 6e-24
Identities = 57/169 (33%), Positives = 97/169 (57%), Gaps = 24/169 (14%)
Frame = +2
Query: 200 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 379
+ D+ KLF+GG+SW+T ++ L+++F ++GE+ + D TGR+RGF F+VF P ++
Sbjct: 2 QSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVA 60
Query: 380 KVMAAGEHTINNKKVDPKKA-----------------------KARHGKIFVGGLSSEIS 490
+++ +H I+ + V+ KKA R KIFVGGL S ++
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120
Query: 491 DDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVND-LLKT 634
+ + + +F +FGT +V + +D + +GF FIT++SE+ V LLKT
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKT 169
Score = 70.1 bits (164), Expect = 1e-12
Identities = 36/99 (36%), Positives = 52/99 (52%)
Frame = +2
Query: 143 NAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 322
N N S S PGR RK+FVGGL T+ + + +F +G + V D N
Sbjct: 87 NMVNRSNSSSIQGSPGGPGRT--RKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHN 144
Query: 323 TGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 439
T R RGF FI + + E+++KV+ H +N K V+ K+A
Sbjct: 145 TQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRA 183
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 102 bits (244), Expect = 2e-22
Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 25/166 (15%)
Frame = +2
Query: 206 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 385
D KLF+GG+SW+T + LR++F +GE+ + V + TGR RGF F+ F P ID+V
Sbjct: 4 DQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRV 63
Query: 386 MAAGEHTINNKKVDPKKAKARH-------------------------GKIFVGGLSSEIS 490
+ +H I+N+ VD K+A +R KIFVGGL ++
Sbjct: 64 L-QDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALT 122
Query: 491 DDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 628
DE R +F +G + + + D+T + +GF F++F+SE V+ +L
Sbjct: 123 SDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVL 168
Score = 62.9 bits (146), Expect = 2e-10
Identities = 29/76 (38%), Positives = 43/76 (56%)
Frame = +2
Query: 212 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 391
+K+FVGGL T E R +F YG + + D T R RGF F+ F + +S+D V+
Sbjct: 110 KKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLH 169
Query: 392 AGEHTINNKKVDPKKA 439
H +N K+V+ K+A
Sbjct: 170 KTFHDLNGKQVEVKRA 185
Score = 51.6 bits (118), Expect = 4e-07
Identities = 20/60 (33%), Positives = 39/60 (65%)
Frame = +2
Query: 452 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 631
GK+F+GG+S + ++ +R +FS FG +L+V + +K + +GF F+ F V++ +L+
Sbjct: 6 GKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQ 65
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 93.9 bits (223), Expect = 8e-20
Identities = 49/150 (32%), Positives = 79/150 (52%), Gaps = 9/150 (6%)
Frame = +2
Query: 209 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 388
+RKL V G+ W+ L+D+ +G++E V D +TGRSRGF ++ F + E +
Sbjct: 2 ERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL 61
Query: 389 AAGEHTINNKKVDPKKAKARH---------GKIFVGGLSSEISDDEIRNFFSEFGTILEV 541
GEH + N+ ++ K A + +IFV + S +S+ + R+ F +G I ++
Sbjct: 62 -KGEHFLGNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDL 120
Query: 542 EMPFDKTKNQRKGFCFITFESEQVVNDLLK 631
MP D Q +G FITF S V DL++
Sbjct: 121 YMPKDYNSKQHRGIGFITFSSADSVEDLME 150
Score = 51.2 bits (117), Expect = 6e-07
Identities = 28/83 (33%), Positives = 40/83 (48%)
Frame = +2
Query: 176 HNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIV 355
+ E R K+FVG L E + +LRD+FG +G I+ + DP RGF F+
Sbjct: 228 YGRGEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVT 287
Query: 356 FKAPESIDKVMAAGEHTINNKKV 424
F D+V A H I ++V
Sbjct: 288 FAENGVADRV-ARRSHEICGQEV 309
Score = 48.8 bits (111), Expect = 3e-06
Identities = 22/55 (40%), Positives = 33/55 (60%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 619
KIFVG L E S D++R++F FG I + +P D ++ +GF F+TF V +
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVAD 295
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 68.1 bits (159), Expect = 5e-12
Identities = 29/81 (35%), Positives = 51/81 (62%)
Frame = +2
Query: 212 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 391
+K+FVGGLS TT++E + +F +G + V D T R RGF F+ + + +S++ VM
Sbjct: 120 KKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQ 179
Query: 392 AGEHTINNKKVDPKKAKARHG 454
+ H +++K+V+ K+A + G
Sbjct: 180 SNFHELSDKRVEVKRAIPKEG 200
Score = 56.4 bits (130), Expect(2) = 4e-19
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +2
Query: 203 DDDR-KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 379
D DR KLFVGG++ ET+++ L+ +F YG + V + TG+ RGF F+ F +
Sbjct: 2 DYDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVV 61
Query: 380 KVMAAGEHTINNKKVDPKKAKARH 451
K + H I K VD +KA +H
Sbjct: 62 KAL-RDTHFILGKPVDVRKAIRKH 84
Score = 55.6 bits (128), Expect(2) = 4e-19
Identities = 24/64 (37%), Positives = 42/64 (65%)
Frame = +2
Query: 443 ARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVND 622
+R KIFVGGLSS +++E +++F FG +V + D N+ +GF F+T++SE V
Sbjct: 117 SRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEV 176
Query: 623 LLKT 634
++++
Sbjct: 177 VMQS 180
Score = 48.0 bits (109), Expect = 5e-06
Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE-QVVNDLLK 631
K+FVGG++ E S++ ++ +FS +G +LE + +K + +GF F+ F ++ VV L
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66
Query: 632 T 634
T
Sbjct: 67 T 67
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 50.4 bits (115), Expect(2) = 4e-15
Identities = 20/60 (33%), Positives = 38/60 (63%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 634
+++VG LS + D + + FSE G ++E + +D+ + KGF F+T++S Q V + +K+
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/109 (22%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Frame = +2
Query: 125 DNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESIN 304
D G + G + G +++VG LSW D L F G++
Sbjct: 175 DGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEAR 234
Query: 305 VKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT-INNKKVDPKKAKAR 448
V D ++GRS+GF F+ + + + + + + + ++ +++ +A+AR
Sbjct: 235 VIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283
Score = 48.0 bits (109), Expect(2) = 4e-15
Identities = 28/82 (34%), Positives = 41/82 (50%)
Frame = +2
Query: 209 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 388
D KLFVG L + +L F + G +E + V D TGRSRGF F+ S+ +V
Sbjct: 90 DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTM---SSVSEVE 146
Query: 389 AAGEHTINNKKVDPKKAKARHG 454
AA + N ++D + + G
Sbjct: 147 AAAQQ-FNGYELDGRPLRVNAG 167
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 604
K+FVG L + ++ F G + VE+ +DK + +GF F+T S
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSS 141
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 73.7 bits (173), Expect = 9e-14
Identities = 47/150 (31%), Positives = 69/150 (46%), Gaps = 19/150 (12%)
Frame = +2
Query: 212 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 391
RK+FV GL W+T L D F YGEIE D +G+S+G+ FI+FK+ +
Sbjct: 128 RKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALK 187
Query: 392 AGEHTINNKKV------------DPKKAKARH-------GKIFVGGLSSEISDDEIRNFF 514
+ I + +P A A+H KI+V +S++I ++ FF
Sbjct: 188 QPQKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFF 247
Query: 515 SEFGTILEVEMPFDKTKNQRKGFCFITFES 604
S FG I E + DK + KGF + S
Sbjct: 248 SRFGEIEEGPLGLDKATGRPKGFALFVYRS 277
Score = 46.0 bits (104), Expect = 2e-05
Identities = 24/76 (31%), Positives = 39/76 (51%)
Frame = +2
Query: 212 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 391
RK++V +S + ++L + F +GEIE + D TGR +GFA V+++ ES K +
Sbjct: 227 RKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALE 286
Query: 392 AGEHTINNKKVDPKKA 439
T + KA
Sbjct: 287 EPHKTFEGHVLHCHKA 302
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 69.7 bits (163), Expect = 1e-12
Identities = 32/83 (38%), Positives = 49/83 (59%)
Frame = +2
Query: 191 APGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 370
+PG + +K+FVGGL+ T+ E + +F +G I + V D T R RGF FI + + E
Sbjct: 26 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 85
Query: 371 SIDKVMAAGEHTINNKKVDPKKA 439
++DKV+ H +N K V+ K A
Sbjct: 86 AVDKVLQKTFHELNGKMVEVKLA 108
Score = 59.3 bits (137), Expect = 2e-09
Identities = 27/87 (31%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Frame = +2
Query: 380 KVMAAGEHTINNKK---VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMP 550
K + +H + NK + + KIFVGGL+S +++ E + +F++FG I +V +
Sbjct: 6 KAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVM 65
Query: 551 FDKTKNQRKGFCFITFESEQVVNDLLK 631
+D + +GF FI+++SE+ V+ +L+
Sbjct: 66 YDHRTQRPRGFGFISYDSEEAVDKVLQ 92
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 69.7 bits (163), Expect = 1e-12
Identities = 31/71 (43%), Positives = 44/71 (61%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 394
K+FVGGL+WET + LR HF YGEI V D NTGRS+G+ F+ F+ PE+ + A
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
Query: 395 GEHTINNKKVD 427
I+ ++ +
Sbjct: 85 PTPIIDGRRAN 95
Score = 47.6 bits (108), Expect = 7e-06
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 610
K+FVGGL+ E + +R F ++G ILE + DK + KG+ F+TF +
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPE 76
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 68.5 bits (160), Expect = 3e-12
Identities = 29/53 (54%), Positives = 38/53 (71%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 373
K+FVGGL+WET + LR HF YG+I V TD NTGRS+G+ F+ F+ PE+
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEA 77
Score = 47.6 bits (108), Expect = 7e-06
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 610
K+FVGGL+ E + +R F ++G ILE + DK + KG+ F+TF +
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPE 76
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 67.3 bits (157), Expect = 8e-12
Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 25/158 (15%)
Frame = +2
Query: 212 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 391
RK+FV GL W+T + L + F YGEIE D +G+S+G+ FI++K+ +
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199
Query: 392 AGEHTINNKKVDPK------------------KAKARHG-------KIFVGGLSSEISDD 496
+ I ++ + A A+H KI+V + +E+
Sbjct: 200 QPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQ 259
Query: 497 EIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 610
++ FFS+FG I E + DK + KGFC ++S +
Sbjct: 260 KLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSE 297
Score = 41.9 bits (94), Expect = 3e-04
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +2
Query: 449 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 628
H KIFV GL + + + F ++G I + + FDK + KG+ FI ++S + L
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 629 K 631
K
Sbjct: 199 K 199
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/76 (28%), Positives = 37/76 (48%)
Frame = +2
Query: 212 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 391
+K++V + E ++L F +GEIE + D TGR +GF V+K+ ES + +
Sbjct: 245 KKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALE 304
Query: 392 AGEHTINNKKVDPKKA 439
T + +KA
Sbjct: 305 EPHKTFEGHILHCQKA 320
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 67.3 bits (157), Expect = 8e-12
Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 25/158 (15%)
Frame = +2
Query: 212 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 391
RK+FV GL W+T + L + F YGEIE D +G+S+G+ FI++K+ +
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199
Query: 392 AGEHTINNKKVDPK------------------KAKARHG-------KIFVGGLSSEISDD 496
+ I ++ + A A+H KI+V + +E+
Sbjct: 200 QPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQ 259
Query: 497 EIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 610
++ FFS+FG I E + DK + KGFC ++S +
Sbjct: 260 KLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSE 297
Score = 41.9 bits (94), Expect = 3e-04
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +2
Query: 449 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 628
H KIFV GL + + + F ++G I + + FDK + KG+ FI ++S + L
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 629 K 631
K
Sbjct: 199 K 199
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/76 (28%), Positives = 37/76 (48%)
Frame = +2
Query: 212 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 391
+K++V + E ++L F +GEIE + D TGR +GF V+K+ ES + +
Sbjct: 245 KKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALE 304
Query: 392 AGEHTINNKKVDPKKA 439
T + +KA
Sbjct: 305 EPHKTFEGHILHCQKA 320
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 67.3 bits (157), Expect = 8e-12
Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 25/158 (15%)
Frame = +2
Query: 212 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 391
RK+FV GL W+T + L + F YGEIE D +G+S+G+ FI++K+ +
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199
Query: 392 AGEHTINNKKVDPK------------------KAKARHG-------KIFVGGLSSEISDD 496
+ I ++ + A A+H KI+V + +E+
Sbjct: 200 QPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQ 259
Query: 497 EIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 610
++ FFS+FG I E + DK + KGFC ++S +
Sbjct: 260 KLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSE 297
Score = 41.9 bits (94), Expect = 3e-04
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +2
Query: 449 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 628
H KIFV GL + + + F ++G I + + FDK + KG+ FI ++S + L
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 629 K 631
K
Sbjct: 199 K 199
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/76 (28%), Positives = 37/76 (48%)
Frame = +2
Query: 212 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 391
+K++V + E ++L F +GEIE + D TGR +GF V+K+ ES + +
Sbjct: 245 KKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALE 304
Query: 392 AGEHTINNKKVDPKKA 439
T + +KA
Sbjct: 305 EPHKTFEGHILHCQKA 320
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 66.5 bits (155), Expect = 1e-11
Identities = 46/199 (23%), Positives = 90/199 (45%), Gaps = 25/199 (12%)
Frame = +2
Query: 107 AQDITTDNQLNGNAENG----GGDSQDHNS-------AEAPGRDDDRKLFVGGLSWETTD 253
+QD++ ++ G+A G G +S+ S AE P ++ KLFVG L+++
Sbjct: 104 SQDVSEGDESEGDASEGDVSEGDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNS 163
Query: 254 KELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-GEHTINNKKVDP 430
+ L F G +E V + T +SRGF F+ + + + + + +N + +
Sbjct: 164 QALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTV 223
Query: 431 KKAKARHGK-------------IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQ 571
KA R + ++VG L ++ + + FSE G ++E + +D+ +
Sbjct: 224 NKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGR 283
Query: 572 RKGFCFITFESEQVVNDLL 628
+GF F+T +N+ +
Sbjct: 284 SRGFGFVTMSDVDELNEAI 302
Score = 45.6 bits (103), Expect = 3e-05
Identities = 18/60 (30%), Positives = 33/60 (55%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 394
+++VG L W+ + L F +G++ V D TGRSRGF F+ + +++ ++A
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 66.1 bits (154), Expect = 2e-11
Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 12/145 (8%)
Frame = +2
Query: 212 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF----------K 361
RKLF+ GL+ +TT + LR F +YG++E V D TG+S+G+ F+ F K
Sbjct: 75 RKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALK 134
Query: 362 AP-ESID-KVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTIL 535
P + ID +V N+ + A KI+V + ++ D + N F +G +
Sbjct: 135 EPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVE 194
Query: 536 EVEMPFDKTKNQRKGFCFITFESEQ 610
E + FDK + +GF +++ +
Sbjct: 195 EGPLGFDKVTGKSRGFALFVYKTAE 219
Score = 51.2 bits (117), Expect = 6e-07
Identities = 26/76 (34%), Positives = 41/76 (53%)
Frame = +2
Query: 212 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 391
RK++V + ++ L +HF AYG++E + D TG+SRGFA V+K E +A
Sbjct: 167 RKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALA 226
Query: 392 AGEHTINNKKVDPKKA 439
I+ K ++ K A
Sbjct: 227 DPVKVIDGKHLNCKLA 242
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 66.1 bits (154), Expect = 2e-11
Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 12/145 (8%)
Frame = +2
Query: 212 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF----------K 361
RKLF+ GL+ +TT + LR F +YG++E V D TG+S+G+ F+ F K
Sbjct: 75 RKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALK 134
Query: 362 AP-ESID-KVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTIL 535
P + ID +V N+ + A KI+V + ++ D + N F +G +
Sbjct: 135 EPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVE 194
Query: 536 EVEMPFDKTKNQRKGFCFITFESEQ 610
E + FDK + +GF +++ +
Sbjct: 195 EGPLGFDKVTGKSRGFALFVYKTAE 219
Score = 51.2 bits (117), Expect = 6e-07
Identities = 26/76 (34%), Positives = 41/76 (53%)
Frame = +2
Query: 212 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 391
RK++V + ++ L +HF AYG++E + D TG+SRGFA V+K E +A
Sbjct: 167 RKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALA 226
Query: 392 AGEHTINNKKVDPKKA 439
I+ K ++ K A
Sbjct: 227 DPVKVIDGKHLNCKLA 242
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 66.1 bits (154), Expect = 2e-11
Identities = 28/71 (39%), Positives = 45/71 (63%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 394
K+FVGGL+WET E+R +F +GEI + TD NTG+S+G+ F+ F+ +S + +A
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 395 GEHTINNKKVD 427
I+ +K +
Sbjct: 78 PNPVIDGRKAN 88
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/48 (47%), Positives = 32/48 (66%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 598
K+FVGGL+ E DE+R +F +FG ILE + DK + KG+ F+TF
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTF 65
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 66.1 bits (154), Expect = 2e-11
Identities = 28/71 (39%), Positives = 45/71 (63%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 394
K+FVGGL+WET E+R +F +GEI + TD NTG+S+G+ F+ F+ +S + +A
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 395 GEHTINNKKVD 427
I+ +K +
Sbjct: 78 PNPVIDGRKAN 88
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/48 (47%), Positives = 32/48 (66%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 598
K+FVGGL+ E DE+R +F +FG ILE + DK + KG+ F+TF
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTF 65
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 65.3 bits (152), Expect = 3e-11
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +2
Query: 203 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 382
D + + F+GGL+W T+D+ LRD F YG + V D +GRSRGF FI F +++D+
Sbjct: 4 DPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDE 63
Query: 383 VMAA-GEHTINNKKVDPKKAKARHG 454
+AA ++ + + KA+ G
Sbjct: 64 AIAAMNGMDLDGRTITVDKAQPHQG 88
Score = 46.8 bits (106), Expect = 1e-05
Identities = 18/58 (31%), Positives = 38/58 (65%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 628
+ F+GGL+ SD +R+ F ++G ++E ++ DK + +GF FITF+ ++ +++ +
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAI 65
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 64.1 bits (149), Expect = 7e-11
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Frame = +2
Query: 188 EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 364
E+ RD R +FV G W+TT + L+ F +YGEIE +V D +TGR +G+ F++FK
Sbjct: 399 ESADRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKT 458
Query: 365 PESIDKVMAAGEHTINNKKVDPKKAKARHGK 457
+ + + E + N+ V A + GK
Sbjct: 459 RKGAREALKRPEKRMYNRIVVCNLASEKPGK 489
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +2
Query: 458 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 631
IFV G + + + ++ F +G I E + DK + KG+ F+ F++ + + LK
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALK 467
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 62.9 bits (146), Expect = 2e-10
Identities = 43/193 (22%), Positives = 82/193 (42%), Gaps = 15/193 (7%)
Frame = +2
Query: 86 MANNDNFAQDIT-TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKEL 262
++ N+A++ D + G + + + P ++ KLFVG L ++ + L
Sbjct: 70 VSQTSNWAEEEEGEDGSIGGTSVTVDESFESEDGVGFPEPPEEAKLFVGNLPYDVDSQAL 129
Query: 263 RDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKA 439
F G +E V + +T +SRGF F+ E +K V +N +++ +A
Sbjct: 130 AMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRA 189
Query: 440 KARHG-------------KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKG 580
R +I+VG L ++ + FSE G +++ + D+ + +G
Sbjct: 190 APRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRG 249
Query: 581 FCFITFESEQVVN 619
F F+ +E VN
Sbjct: 250 FGFVQMSNENEVN 262
Score = 45.2 bits (102), Expect = 4e-05
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 394
+++VG L W+ L F +G++ V +D TGRSRGF F+ ++ +AA
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Frame = +2
Query: 128 NQLNGNAENGGGDSQDHNSAEAPG--RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESI 301
N+L+G G S + G R KLFVGGLSW T D L+ F ++GE+
Sbjct: 5 NKLSGILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEA 64
Query: 302 NVKTDPNTGRSRGFAFIVFKAPESIDKVM 388
V D TGRSRGF F+ F +S + +
Sbjct: 65 TVIADRETGRSRGFGFVSFSCEDSANNAI 93
Score = 47.2 bits (107), Expect = 9e-06
Identities = 20/59 (33%), Positives = 33/59 (55%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 631
K+FVGGLS D ++ F+ FG + E + D+ + +GF F++F E N+ +K
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Frame = +2
Query: 128 NQLNGNAENGGGDSQDHNSAEAPG--RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESI 301
N+L+G G S + G R KLFVGGLSW T D L+ F ++GE+
Sbjct: 5 NKLSGILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEA 64
Query: 302 NVKTDPNTGRSRGFAFIVFKAPESIDKVM 388
V D TGRSRGF F+ F +S + +
Sbjct: 65 TVIADRETGRSRGFGFVSFSCEDSANNAI 93
Score = 47.2 bits (107), Expect = 9e-06
Identities = 20/59 (33%), Positives = 33/59 (55%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 631
K+FVGGLS D ++ F+ FG + E + D+ + +GF F++F E N+ +K
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 62.9 bits (146), Expect = 2e-10
Identities = 27/71 (38%), Positives = 44/71 (61%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 394
K+FVGGL+WET E+R +F +GEI + TD TG+S+G+ F+ F+ +S + +A
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVAD 77
Query: 395 GEHTINNKKVD 427
I+ +K +
Sbjct: 78 PNPVIDGRKAN 88
Score = 55.2 bits (127), Expect = 3e-08
Identities = 24/50 (48%), Positives = 33/50 (66%)
Frame = +2
Query: 449 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 598
H K+FVGGL+ E DE+R +F +FG ILE + DK + KG+ F+TF
Sbjct: 16 HTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTF 65
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 62.5 bits (145), Expect = 2e-10
Identities = 44/139 (31%), Positives = 64/139 (46%), Gaps = 8/139 (5%)
Frame = +2
Query: 218 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 397
L+ G L + T+ L D F + S+ V D N RS G+A+I F P + M A
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAMEAL 109
Query: 398 EHT--------INNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPF 553
+T I DP + G IF+ L + I + + FS FGTIL ++
Sbjct: 110 NYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAM 169
Query: 554 DKTKNQRKGFCFITFESEQ 610
D T + KG+ F+ FE E+
Sbjct: 170 DVT-GRSKGYGFVQFEKEE 187
Score = 55.6 bits (128), Expect = 3e-08
Identities = 45/142 (31%), Positives = 68/142 (47%), Gaps = 14/142 (9%)
Frame = +2
Query: 218 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES----IDKV 385
+F+ L +K L + F ++G I S V D TGRS+G+ F+ F+ ES IDK+
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 386 --MAAGE------HTINNKKV--DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTIL 535
M + H I ++ D R ++V L EI +DE+R F +FG I
Sbjct: 197 NGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVIS 256
Query: 536 EVEMPFDKTKNQRKGFCFITFE 601
+ D++ N R F F+ FE
Sbjct: 257 SAVVMRDQSGNSR-CFGFVNFE 277
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +2
Query: 218 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 370
L++ L D++L++ F YG + S V +P G SRGF F+ + PE
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPE 383
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 62.1 bits (144), Expect = 3e-10
Identities = 27/53 (50%), Positives = 36/53 (67%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 373
K+FVGGL+WET +R +F +GEI V TD NTGRS+G+ F+ FK E+
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEA 75
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 610
KIFVGGL+ E D +R +F +FG I+E + DK + KG+ F+TF+ +
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAE 74
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 62.1 bits (144), Expect = 3e-10
Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 8/151 (5%)
Frame = +2
Query: 182 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 361
+AEA + L+VG L + L D F + ++ V D T RS G+A++ F
Sbjct: 35 AAEALQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFA 93
Query: 362 APESIDKVMAAGEHT-INNKKV-------DPKKAKARHGKIFVGGLSSEISDDEIRNFFS 517
PE + M + + I ++ + DP + G +F+ L + I + + FS
Sbjct: 94 NPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFS 153
Query: 518 EFGTILEVEMPFDKTKNQRKGFCFITFESEQ 610
FGTIL ++ D + KG+ F+ FE E+
Sbjct: 154 SFGTILSCKVAMD-VVGRSKGYGFVQFEKEE 183
Score = 54.0 bits (124), Expect = 8e-08
Identities = 42/171 (24%), Positives = 82/171 (47%), Gaps = 24/171 (14%)
Frame = +2
Query: 170 QDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAF 349
QD +E+ ++V L E TD EL+ FG YG+I S V D +G SR F F
Sbjct: 211 QDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGF 269
Query: 350 IVFKAPE----SIDKV--MAAGEHTI----NNKKVDPKK--------------AKARHGK 457
+ F +PE +++K+ ++ GE + KK D ++ K +
Sbjct: 270 VNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSN 329
Query: 458 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 610
+++ L ++D++++ FSE+G + ++ + ++ +GF F+ + + +
Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPE 379
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 61.7 bits (143), Expect = 4e-10
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Frame = +2
Query: 188 EAPGRDDD-RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 364
E+ RD R +FV GL W+TT + L+ F YGEI +V D +TGR++GF F++FK
Sbjct: 154 ESADRDSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKT 213
Query: 365 PESIDKVMAAGEHTINNKKV 424
+ + E + N+ V
Sbjct: 214 RKGARAALKNPEKRMYNRTV 233
Score = 37.5 bits (83), Expect = 0.007
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +2
Query: 458 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 631
IFV GL + + + ++ F +G I E + DK + KGF F+ F++ + LK
Sbjct: 165 IFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALK 222
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 61.7 bits (143), Expect = 4e-10
Identities = 28/78 (35%), Positives = 42/78 (53%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 394
K+FVGG+S+ T + LR+ F YGE+ + D TGRSRGFAF+ F + E M
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQL 94
Query: 395 GEHTINNKKVDPKKAKAR 448
++ +++ A R
Sbjct: 95 DGQDLHGRRIRVNYATER 112
Score = 46.4 bits (105), Expect = 2e-05
Identities = 18/59 (30%), Positives = 37/59 (62%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 631
KIFVGG+S + +R FS++G +++ ++ D+ + +GF F+TF S + ++ ++
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ 93
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 61.3 bits (142), Expect = 5e-10
Identities = 39/148 (26%), Positives = 77/148 (52%), Gaps = 9/148 (6%)
Frame = +2
Query: 203 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 382
++ KLFVG + ++ +L F + ++ +N+ D T SRG F++ + E DK
Sbjct: 15 EESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADK 74
Query: 383 VMAA--------GEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE 538
++ A G +++ K + + K+FVG L +S+ E+++ FS++GTI +
Sbjct: 75 LVNACHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKD 134
Query: 539 VEMPFDKTKNQRKGFCFITFES-EQVVN 619
+++ + KG F+ +E+ EQ V+
Sbjct: 135 LQI-LRGAQQTSKGCAFLKYETKEQAVS 161
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 218 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 358
LF+ + E D+EL F ++G + S V D TG S+ F + F
Sbjct: 350 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGKLSF 396
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 61.3 bits (142), Expect = 5e-10
Identities = 39/148 (26%), Positives = 77/148 (52%), Gaps = 9/148 (6%)
Frame = +2
Query: 203 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 382
++ KLFVG + ++ +L F + ++ +N+ D T SRG F++ + E DK
Sbjct: 15 EESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADK 74
Query: 383 VMAA--------GEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE 538
++ A G +++ K + + K+FVG L +S+ E+++ FS++GTI +
Sbjct: 75 LVNACHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKD 134
Query: 539 VEMPFDKTKNQRKGFCFITFES-EQVVN 619
+++ + KG F+ +E+ EQ V+
Sbjct: 135 LQI-LRGAQQTSKGCAFLKYETKEQAVS 161
Score = 31.5 bits (68), Expect = 0.48
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +2
Query: 218 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV--MA 391
LF+ + E D+EL F ++G + S V D TG S+ F F+ + + + M
Sbjct: 351 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMM 410
Query: 392 AGEHTINNKKV 424
G H + KK+
Sbjct: 411 NGRH-LGGKKL 420
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 61.3 bits (142), Expect = 5e-10
Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 394
++F+GGL + +++LRD GEI + + D ++G S+G+AF+ FK + K +
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 395 GEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE-VEMPFDKTKNQ 571
K ++F+G + ++DE R + G +E +E+ D T
Sbjct: 177 LHSKEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTT 236
Query: 572 R-KGFCFITF 598
R +GF F+ +
Sbjct: 237 RNRGFAFVLY 246
Score = 48.4 bits (110), Expect = 4e-06
Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Frame = +2
Query: 449 HG-KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDL 625
HG ++F+GGL ++ ++++R+ E G I EV + D+ KG+ F+ F+++ V
Sbjct: 114 HGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKA 173
Query: 626 LK 631
++
Sbjct: 174 IE 175
Score = 32.3 bits (70), Expect = 0.28
Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
Frame = +2
Query: 116 ITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIE 295
I ++ +L GNA + + + L+V + T+ ++L++ F +GE+
Sbjct: 260 IDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVT 319
Query: 296 SINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVDPKKAK 442
I T P G R F F+ + S K + E + +N + ++ AK
Sbjct: 320 KI--VTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAK 367
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 60.9 bits (141), Expect = 7e-10
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Frame = +2
Query: 188 EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 364
EA RD RK+FV GL WETT + L F YGEIE V D TG+++GF F++FK
Sbjct: 95 EAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKT 154
Query: 365 PESIDKVMAAGEHTINNK 418
+ + + + I N+
Sbjct: 155 RKGAKEALKEPKKRILNR 172
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 60.9 bits (141), Expect = 7e-10
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Frame = +2
Query: 188 EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 364
EA RD RK+FV GL WETT + L F YGEIE V D TG+++GF F++FK
Sbjct: 95 EAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKT 154
Query: 365 PESIDKVMAAGEHTINNK 418
+ + + + I N+
Sbjct: 155 RKGAKEALKEPKKRILNR 172
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 60.9 bits (141), Expect = 7e-10
Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 13/172 (7%)
Frame = +2
Query: 128 NQLNGNAENGGGDSQDHNSAEAPGRDDD-RKLFVGGLSWETTDKELRDHFGAYGEIESIN 304
N+LN A NG ++ + R +F+ L K L + F A+G I S
Sbjct: 104 NELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCK 163
Query: 305 VKTDPNTGRSRGFAFIVFKAPESIDKVM-AAGEHTINNKKV-----------DPKKAKAR 448
V DP+ G+S+G+ F+ + E+ + +N+K+V DP K +
Sbjct: 164 VAVDPS-GQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVK 222
Query: 449 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 604
++V LS +SD+E+ F EFG + D + + KGF F+ FE+
Sbjct: 223 FTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFEN 273
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/67 (37%), Positives = 34/67 (50%)
Frame = +2
Query: 188 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 367
EA + L+V L TD +LR+HF +G I S V DP +G SRG F+ F P
Sbjct: 319 EAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTP 377
Query: 368 ESIDKVM 388
E + +
Sbjct: 378 EEATRAI 384
Score = 41.5 bits (93), Expect = 4e-04
Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 24/155 (15%)
Frame = +2
Query: 218 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK-APESIDKVMAA 394
++V LS +D+EL FG +G S + D G+S+GF F+ F+ + ++ V A
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFENSDDAARAVDAL 284
Query: 395 GEHTINNKKVDPKKA-----------------------KARHGKIFVGGLSSEISDDEIR 505
T ++K+ KA K++ ++V L ++DD++R
Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLR 344
Query: 506 NFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 610
F+ FGTI ++ D + R G F+ F + +
Sbjct: 345 EHFAPFGTITSCKVMRDPSGVSR-GSGFVAFSTPE 378
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 60.9 bits (141), Expect = 7e-10
Identities = 27/71 (38%), Positives = 43/71 (60%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 394
K+FVGGL+WET LR++F +G+I V TD ++GRS+G+ F+ F PE+ K
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 395 GEHTINNKKVD 427
I+ ++ +
Sbjct: 68 PAPVIDGRRAN 78
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/48 (43%), Positives = 32/48 (66%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 598
K+FVGGL+ E +RN+F +FG I+E + DK+ + KG+ F+TF
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTF 55
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 60.9 bits (141), Expect = 7e-10
Identities = 27/71 (38%), Positives = 43/71 (60%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 394
K+FVGGL+WET LR++F +G+I V TD ++GRS+G+ F+ F PE+ K
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 395 GEHTINNKKVD 427
I+ ++ +
Sbjct: 68 PAPVIDGRRAN 78
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/48 (43%), Positives = 32/48 (66%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 598
K+FVGGL+ E +RN+F +FG I+E + DK+ + KG+ F+TF
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTF 55
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 60.5 bits (140), Expect = 9e-10
Identities = 39/170 (22%), Positives = 80/170 (47%), Gaps = 14/170 (8%)
Frame = +2
Query: 143 NAENGGGDSQDHNS---AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKT 313
+ + G DH S + R KLFVG + T++E+R +F +G + + +
Sbjct: 94 SGQKRGYPISDHGSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIK 153
Query: 314 DPNTGRSRGFAFIVFKAPESIDKVMAA---------GEHTINNKKVDPKKAK--ARHGKI 460
D TG+ +G F+ + + D+ + A G + + D ++ + K+
Sbjct: 154 DKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKL 213
Query: 461 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 610
FVG L+ + ++ E+ F +FG + +V + D+ + Q +G F+ + S++
Sbjct: 214 FVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKE 262
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 60.5 bits (140), Expect = 9e-10
Identities = 39/170 (22%), Positives = 80/170 (47%), Gaps = 14/170 (8%)
Frame = +2
Query: 143 NAENGGGDSQDHNS---AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKT 313
+ + G DH S + R KLFVG + T++E+R +F +G + + +
Sbjct: 94 SGQKRGYPISDHGSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIK 153
Query: 314 DPNTGRSRGFAFIVFKAPESIDKVMAA---------GEHTINNKKVDPKKAK--ARHGKI 460
D TG+ +G F+ + + D+ + A G + + D ++ + K+
Sbjct: 154 DKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKL 213
Query: 461 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 610
FVG L+ + ++ E+ F +FG + +V + D+ + Q +G F+ + S++
Sbjct: 214 FVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKE 262
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 60.5 bits (140), Expect = 9e-10
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Frame = +2
Query: 203 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-D 379
D + + FVGGL+W T D+ L F YG++ + D TGRSRGF F+ FK +++ D
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 380 KVMAAGEHTINNKKVDPKKAKAR 448
+ ++ + + +A++R
Sbjct: 65 AIEGMNGQDLDGRSITVNEAQSR 87
Score = 43.2 bits (97), Expect = 1e-04
Identities = 16/59 (27%), Positives = 36/59 (61%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 631
+ FVGGL+ D + F+++G +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIE 67
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 60.5 bits (140), Expect = 9e-10
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Frame = +2
Query: 203 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-D 379
D + + FVGGL+W T D+ L F YG++ + D TGRSRGF F+ FK +++ D
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 380 KVMAAGEHTINNKKVDPKKAKAR 448
+ ++ + + +A++R
Sbjct: 65 AIEGMNGQDLDGRSITVNEAQSR 87
Score = 43.2 bits (97), Expect = 1e-04
Identities = 16/59 (27%), Positives = 36/59 (61%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 631
+ FVGGL+ D + F+++G +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIE 67
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 59.7 bits (138), Expect = 2e-09
Identities = 26/48 (54%), Positives = 31/48 (64%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 358
KLF+GGLSW T D LRD F +G++ V D TGRSRGF F+ F
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
Score = 44.0 bits (99), Expect = 8e-05
Identities = 17/51 (33%), Positives = 31/51 (60%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 607
K+F+GGLS D +R+ F+ FG +++ ++ D+ + +GF F+ F E
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDE 86
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 59.7 bits (138), Expect = 2e-09
Identities = 26/48 (54%), Positives = 31/48 (64%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 358
KLF+GGLSW T D LRD F +G++ V D TGRSRGF F+ F
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
Score = 44.0 bits (99), Expect = 8e-05
Identities = 17/51 (33%), Positives = 31/51 (60%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 607
K+F+GGLS D +R+ F+ FG +++ ++ D+ + +GF F+ F E
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDE 86
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 59.7 bits (138), Expect = 2e-09
Identities = 41/172 (23%), Positives = 76/172 (44%), Gaps = 8/172 (4%)
Frame = +2
Query: 140 GNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDP 319
G GGGD H + + L+VG L + TD +L D+F ++ S+ V D
Sbjct: 30 GIGVGGGGDGVTHGALCS--------LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDA 81
Query: 320 NTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV--------DPKKAKARHGKIFVGGL 475
T S G+ ++ + + +K M ++ N K+ D ++ G +FV L
Sbjct: 82 ATNTSLGYGYVNYSNTDDAEKAMQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNL 141
Query: 476 SSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 631
+ + + FS GTI+ ++ D Q +G+ F+ F++E + ++
Sbjct: 142 DKSVDNKTLHEAFSGCGTIVSCKVATDH-MGQSRGYGFVQFDTEDSAKNAIE 192
Score = 53.2 bits (122), Expect = 1e-07
Identities = 52/168 (30%), Positives = 78/168 (46%), Gaps = 32/168 (19%)
Frame = +2
Query: 218 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 397
++V LS TTD EL+ FG YG I S V D G+SR F F+ F+ PE + + A
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPEDAARAVEA- 284
Query: 398 EHTINNKKVDPKK---AKARH-------------------GKIFVG------GLSSEISD 493
+N KK D K+ KA+ G F G L ++D
Sbjct: 285 ---LNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTD 341
Query: 494 DEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF----ESEQVVNDL 625
+++R F+EFGTI ++ D + KG F+ F E+ +V+N++
Sbjct: 342 EKLRELFAEFGTITSCKVMRDPS-GTSKGSGFVAFSAASEASRVLNEM 388
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/72 (31%), Positives = 37/72 (51%)
Frame = +2
Query: 173 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFI 352
+ S++ + D L+V L TD++LR+ F +G I S V DP +G S+G F+
Sbjct: 315 EQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFV 373
Query: 353 VFKAPESIDKVM 388
F A +V+
Sbjct: 374 AFSAASEASRVL 385
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 59.3 bits (137), Expect = 2e-09
Identities = 22/48 (45%), Positives = 33/48 (68%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 358
KLF+GGLSW ++ L+D F ++GE+ + + D +GRSRGF F+ F
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDF 89
Score = 50.0 bits (114), Expect = 1e-06
Identities = 19/51 (37%), Positives = 32/51 (62%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 607
K+F+GGLS + + +++ FS FG + EV + +DK + +GF F+ F E
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEE 92
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 59.3 bits (137), Expect = 2e-09
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +2
Query: 209 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKV 385
+ ++FVGGLSW+ T+++L F YG+I + +TGR RGF FI F D +
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 386 MAAGEHTINNKKVDPKKAKARHG 454
+ NK + KA+ + G
Sbjct: 71 KHMHGRELGNKVISVNKAEPKVG 93
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/59 (32%), Positives = 36/59 (61%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 631
+IFVGGLS ++++ ++ + F +G I E ++ + + +GF FITF + +D +K
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 59.3 bits (137), Expect = 2e-09
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +2
Query: 209 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKV 385
+ ++FVGGLSW+ T+++L F YG+I + +TGR RGF FI F D +
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 386 MAAGEHTINNKKVDPKKAKARHG 454
+ NK + KA+ + G
Sbjct: 71 KHMHGRELGNKVISVNKAEPKVG 93
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/59 (32%), Positives = 36/59 (61%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 631
+IFVGGLS ++++ ++ + F +G I E ++ + + +GF FITF + +D +K
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 59.3 bits (137), Expect = 2e-09
Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 13/155 (8%)
Frame = +2
Query: 185 AEAPGRDDDR-KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 361
AE +++R KLFVG + T+ +L F + + +N+ + T RG F+
Sbjct: 2 AEETMENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCP 61
Query: 362 APESIDKVMAAGEHTINNKKV-----DPKKAKARHG-------KIFVGGLSSEISDDEIR 505
E DKV+ ++ +NKK P + K G K+FVG L +S+ E++
Sbjct: 62 TREDADKVI----NSFHNKKTLPGASSPLQVKYADGELERLEHKLFVGMLPKNVSETEVQ 117
Query: 506 NFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 610
+ FSE+GTI ++++ + KG F+ +ES++
Sbjct: 118 SLFSEYGTIKDLQI-LRGSLQTSKGCLFLKYESKE 151
Score = 36.3 bits (80), Expect = 0.017
Identities = 15/60 (25%), Positives = 33/60 (55%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 634
K+FVG + +++ ++ F EF + EV + +KT +G CF+T + + + ++ +
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINS 72
Score = 34.7 bits (76), Expect = 0.052
Identities = 22/77 (28%), Positives = 38/77 (49%)
Frame = +2
Query: 218 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 397
LF+ + E D+EL F +G++ S V D TG S+ F FI + + + +
Sbjct: 332 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI--- 388
Query: 398 EHTINNKKVDPKKAKAR 448
+T+N ++ KK K +
Sbjct: 389 -NTMNGCQLSGKKLKVQ 404
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 58.8 bits (136), Expect = 3e-09
Identities = 42/155 (27%), Positives = 80/155 (51%), Gaps = 12/155 (7%)
Frame = +2
Query: 182 SAEAPG--RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIV 355
S AP R+ +FV L T+ L+D F +G I S V T + G+SRG+ F+
Sbjct: 100 SVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLED-GKSRGYGFVQ 158
Query: 356 FK-------APESIDKVMAAGEHTINNK---KVDPKKAKARHGKIFVGGLSSEISDDEIR 505
F+ A ++++ + A + K K D K + ++ +++ L +++S+D +R
Sbjct: 159 FEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLR 218
Query: 506 NFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 610
F+EFG I+ + + D+ + R G+ F+ F++ +
Sbjct: 219 EKFAEFGKIVSLAIAKDENRLCR-GYAFVNFDNPE 252
Score = 50.8 bits (116), Expect = 7e-07
Identities = 42/163 (25%), Positives = 77/163 (47%), Gaps = 24/163 (14%)
Frame = +2
Query: 218 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI------- 376
L++ L + ++ LR+ F +G+I S+ + D N RG+AF+ F PE
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENR-LCRGYAFVNFDNPEDARRAAETV 261
Query: 377 ------DKVMAAG--------EHTINNK---KVDPKKAKARHGKIFVGGLSSEISDDEIR 505
K + G E + + K + +K A+ I+V ++ ++++E+R
Sbjct: 262 NGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELR 321
Query: 506 NFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 634
FS+ GTI ++ D+ K + KGF F+ F + + D +KT
Sbjct: 322 KHFSQCGTITSTKLMCDE-KGKSKGFGFVCFSTPEEAIDAVKT 363
Score = 47.2 bits (107), Expect = 9e-06
Identities = 31/147 (21%), Positives = 68/147 (46%), Gaps = 8/147 (5%)
Frame = +2
Query: 218 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 397
L+VG L T+ L D F + + S+ + D ++GRS + + F + + + +
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 398 EHTINNKKV--------DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPF 553
+++ N K+ P + G +FV L +++ +++ F +FG I+ ++
Sbjct: 86 NNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVA- 144
Query: 554 DKTKNQRKGFCFITFESEQVVNDLLKT 634
+ +G+ F+ FE E + ++T
Sbjct: 145 TLEDGKSRGYGFVQFEQEDAAHAAIQT 171
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 58.8 bits (136), Expect = 3e-09
Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Frame = +2
Query: 179 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 358
+ AE PG L+V GLS T+++L DHF G++ +++ DP T SRGF FI
Sbjct: 68 SDAENPGNS----LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISM 123
Query: 359 KAPESIDKVMAAGEHTI-NNKKVDPKKAKARHGK 457
K+ ++ + + +H++ + + +KA+ R G+
Sbjct: 124 KSVGDANRCIRSLDHSVLQGRVITVEKARRRRGR 157
Score = 35.1 bits (77), Expect = 0.039
Identities = 14/59 (23%), Positives = 34/59 (57%)
Frame = +2
Query: 458 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 634
++V GLS +++ ++ + F++ G + +V + D + +GF FI+ +S N +++
Sbjct: 77 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRS 135
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 58.0 bits (134), Expect = 5e-09
Identities = 25/71 (35%), Positives = 41/71 (57%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 394
K+FVGGL+WET + ++ HF +GEI V TD +GRS+G+ F+ F+ E+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 395 GEHTINNKKVD 427
I+ ++ +
Sbjct: 74 ATPVIDGRRAN 84
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 610
K+FVGGL+ E + ++ F +FG ILE + DK + KG+ F+TF +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAE 65
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 58.0 bits (134), Expect = 5e-09
Identities = 25/71 (35%), Positives = 41/71 (57%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 394
K+FVGGL+WET + ++ HF +GEI V TD +GRS+G+ F+ F+ E+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 395 GEHTINNKKVD 427
I+ ++ +
Sbjct: 74 ATPVIDGRRAN 84
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 610
K+FVGGL+ E + ++ F +FG ILE + DK + KG+ F+TF +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAE 65
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 58.0 bits (134), Expect = 5e-09
Identities = 25/71 (35%), Positives = 41/71 (57%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 394
K+FVGGL+WET + ++ HF +GEI V TD +GRS+G+ F+ F+ E+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 395 GEHTINNKKVD 427
I+ ++ +
Sbjct: 74 ATPVIDGRRAN 84
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 610
K+FVGGL+ E + ++ F +FG ILE + DK + KG+ F+TF +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAE 65
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 57.2 bits (132), Expect = 8e-09
Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 17/162 (10%)
Frame = +2
Query: 164 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 343
D +D A+ P RD R +F + + T++++ + F G++ + + D N+ RS+G
Sbjct: 154 DKKDEPEAD-PERDQ-RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 211
Query: 344 AFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHG-----------------KIFVGG 472
+I F S+ +A + V K ++A K++VG
Sbjct: 212 GYIEFYDVMSVPMAIALSGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGTGPADRKLYVGN 271
Query: 473 LSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 598
L +S+ ++R F FG + V++P D Q KGF FI F
Sbjct: 272 LHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF 313
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 57.2 bits (132), Expect = 8e-09
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Frame = +2
Query: 137 NGNAENGGGDSQDHNSAEAPGRD--DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVK 310
+G+A GD + ++A D D +LFV L + T++EL +HF +G+I +++
Sbjct: 234 DGDAMEVEGDGKVAQESKAVSDDVLDTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLV 293
Query: 311 TDPNTGRSRGFAFIVFKAPESIDKVM 388
D T RSRG A+I++ PE + M
Sbjct: 294 LDKETKRSRGIAYILYLIPECAARAM 319
Score = 42.7 bits (96), Expect = 2e-04
Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 20/159 (12%)
Frame = +2
Query: 194 PGRDDDRKLFVGGLSWETTDKELRDHFG---AYGEIESINVKTDPNTGR--SRGFAFIVF 358
P + L V LS++TTD+ L+ HF G+I S+ + + S G+ F+ F
Sbjct: 563 PDVTESNVLNVKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEF 622
Query: 359 KAPESIDKVMAAGEHTI-----------NNKKVDPKKAKARHG----KIFVGGLSSEISD 493
+ E+ V + T+ NK+ D + K+ V ++ E +
Sbjct: 623 DSVETATSVYRDLQGTVLDGHALILRFCENKRSDKVGKDSNKDKPCTKLHVKNIAFEATK 682
Query: 494 DEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 610
E+R FS FG I + +P K Q G+ F+ F ++Q
Sbjct: 683 RELRQLFSPFGQIKSMRLP-KKNIGQYAGYAFVEFVTKQ 720
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 57.2 bits (132), Expect = 8e-09
Identities = 26/131 (19%), Positives = 71/131 (54%), Gaps = 3/131 (2%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE-SIDKVMA 391
++++GG+ + T+ +L+ G+ GE+ + + + ++G +G+AF+ F++ + + + +
Sbjct: 93 EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDT 152
Query: 392 AGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE-VEMPFD-KTK 565
K++ +A+H ++F+G + + +I+ + G ++ VE+P + +
Sbjct: 153 LNNTDFRGKRIKCSTTQAKH-RLFLGNVPRNWMESDIKKAANRIGPGVQIVELPKEPQNM 211
Query: 566 NQRKGFCFITF 598
+ +GF FI +
Sbjct: 212 GRNRGFAFIEY 222
Score = 44.0 bits (99), Expect = 8e-05
Identities = 16/63 (25%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +2
Query: 449 HG-KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDL 625
HG ++++GG+ ++ ++ +++ F G + EV + +K KG+ F+TF S+ + +
Sbjct: 90 HGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEA 149
Query: 626 LKT 634
+ T
Sbjct: 150 IDT 152
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 56.8 bits (131), Expect = 1e-08
Identities = 29/79 (36%), Positives = 42/79 (53%)
Frame = +2
Query: 203 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 382
D + K++V GL W T + L +F +GEI V D T RS+GF F+ F+ ES +
Sbjct: 6 DRETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATR 65
Query: 383 VMAAGEHTINNKKVDPKKA 439
HTI+ + V+ K A
Sbjct: 66 ACENPNHTIDGRTVNCKLA 84
Score = 35.1 bits (77), Expect = 0.039
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 446 RHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 598
R KI+V GL + + ++F FG I+ ++ D + KGF F+TF
Sbjct: 7 RETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTF 57
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 56.4 bits (130), Expect = 1e-08
Identities = 26/71 (36%), Positives = 41/71 (57%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 394
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK +K M
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRD 62
Query: 395 GEHTINNKKVD 427
+N K++D
Sbjct: 63 AIEEMNGKELD 73
Score = 49.6 bits (113), Expect = 2e-06
Identities = 18/59 (30%), Positives = 40/59 (67%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 631
+ FVGGL+ +D++++ FS+FG +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 56.4 bits (130), Expect = 1e-08
Identities = 26/71 (36%), Positives = 41/71 (57%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 394
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK +K M
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRD 62
Query: 395 GEHTINNKKVD 427
+N K++D
Sbjct: 63 AIEEMNGKELD 73
Score = 49.6 bits (113), Expect = 2e-06
Identities = 18/59 (30%), Positives = 40/59 (67%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 631
+ FVGGL+ +D++++ FS+FG +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 56.4 bits (130), Expect = 1e-08
Identities = 26/71 (36%), Positives = 41/71 (57%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 394
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK +K M
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRD 62
Query: 395 GEHTINNKKVD 427
+N K++D
Sbjct: 63 AIEEMNGKELD 73
Score = 49.6 bits (113), Expect = 2e-06
Identities = 18/59 (30%), Positives = 40/59 (67%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 631
+ FVGGL+ +D++++ FS+FG +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 56.4 bits (130), Expect = 1e-08
Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 11/142 (7%)
Frame = +2
Query: 218 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 397
L+VG LS + T+K+L D F + S+++ + TG+S +A+I F +P S M
Sbjct: 23 LYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRL 82
Query: 398 EHT-INNKKVD----------PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVE 544
H+ + K + ++ + ++V L S I+ + F FG+IL +
Sbjct: 83 NHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSCK 142
Query: 545 MPFDKTKNQRKGFCFITFESEQ 610
+ + Q KGF F+ F++EQ
Sbjct: 143 VV--EENGQSKGFGFVQFDTEQ 162
Score = 47.6 bits (108), Expect = 7e-06
Identities = 46/169 (27%), Positives = 72/169 (42%), Gaps = 23/169 (13%)
Frame = +2
Query: 167 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 346
++D +A A G D ++V L TD L F YG + S+ V D GRSRGF
Sbjct: 188 NKDERAAMA-GNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFG 245
Query: 347 FIVFKAPESIDKVMAA--GEHTINNK-------KVDPK--------------KAKARHGK 457
F+ F PE+ K M + G + K K D + K R
Sbjct: 246 FVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSN 305
Query: 458 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 604
++V LS +++ +R F +G I+ ++ + + KGF F+ F +
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCHE-NGRSKGFGFVCFSN 353
Score = 41.1 bits (92), Expect = 6e-04
Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 12/139 (8%)
Frame = +2
Query: 218 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA- 394
L+V L T L F +G I S V + G+S+GF F+ F +S +A
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVEE--NGQSKGFGFVQFDTEQSAVSARSAL 171
Query: 395 ------GEHTINNKKVDPKKAKARHGK-----IFVGGLSSEISDDEIRNFFSEFGTILEV 541
G+ K ++ + A G ++V L ++DD + FS++GT+ V
Sbjct: 172 HGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSV 231
Query: 542 EMPFDKTKNQRKGFCFITF 598
+ D R GF F+ F
Sbjct: 232 VVMRDGMGRSR-GFGFVNF 249
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/60 (40%), Positives = 35/60 (58%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 394
KLF+GG+++ + LR+ F YGE+ V D TGRSRGF F+ F + E+ + A
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Score = 47.6 bits (108), Expect = 7e-06
Identities = 15/59 (25%), Positives = 37/59 (62%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 631
K+F+GG++ + +D +R F+++G +++ + D+ + +GF F+TF S + + ++
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 55.2 bits (127), Expect = 3e-08
Identities = 28/75 (37%), Positives = 40/75 (53%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 394
K++VGGL W T + L + F +GEI +NV D T RS+G+ F+ FK ES +
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73
Query: 395 GEHTINNKKVDPKKA 439
TI + + K A
Sbjct: 74 PNPTIEGRITNCKLA 88
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 610
KI+VGGL + + NFF FG I+ V + D+ ++ +G+ F+TF+ +
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAE 65
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 55.2 bits (127), Expect = 3e-08
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 394
++FVGGLS E TD++L F +G+I + + +TGRSRGF FI F ++D+ +
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 395 ------GEHTINNKKVDPK 433
G+ I+ + +PK
Sbjct: 68 MHGRDFGDRVISVNRAEPK 86
Score = 53.2 bits (122), Expect = 1e-07
Identities = 23/64 (35%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +2
Query: 443 ARHG-KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 619
A+ G +IFVGGLS E++D ++ FS FG IL+ ++ ++ + +GF FITF + ++
Sbjct: 3 AKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMD 62
Query: 620 DLLK 631
+ ++
Sbjct: 63 ESIR 66
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 55.2 bits (127), Expect = 3e-08
Identities = 24/71 (33%), Positives = 41/71 (57%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 394
K+FVGGL+W+T + + DHF YG+I + +D T RS+G+ F+ FK ++ +
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED 77
Query: 395 GEHTINNKKVD 427
IN ++ +
Sbjct: 78 STPIINGRRAN 88
Score = 41.1 bits (92), Expect = 6e-04
Identities = 18/49 (36%), Positives = 31/49 (63%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE 601
K+FVGGL+ + + + + F ++G ILE + DK + KG+ F+TF+
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFK 66
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 55.2 bits (127), Expect = 3e-08
Identities = 44/204 (21%), Positives = 92/204 (45%), Gaps = 24/204 (11%)
Frame = +2
Query: 95 NDNFAQDITTDNQLNGNAENGGGD-SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDH 271
+D + + ++ + G + ++ + +A G ++ +L+VG L + T EL
Sbjct: 78 DDEIQASVEEEEEVEEEGDEGEEEVEEEKQTTQASG--EEGRLYVGNLPYTITSSELSQI 135
Query: 272 FGAYGEIESINVKTDPNTGRSRGFAFI----VFKAPESID-----------------KVM 388
FG G + + + D T RSRGF F+ + +A E++ +V
Sbjct: 136 FGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVP 195
Query: 389 AAGEHTINNKKV-DPKKAKA-RHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKT 562
GE+ + K+ D ++ K++ G L ++ +++ F + +L ++ +++
Sbjct: 196 RGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERN 255
Query: 563 KNQRKGFCFITFESEQVVNDLLKT 634
+ +GF FI+FES + V L T
Sbjct: 256 TGRSRGFGFISFESAENVQSALAT 279
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 55.2 bits (127), Expect = 3e-08
Identities = 34/159 (21%), Positives = 71/159 (44%), Gaps = 3/159 (1%)
Frame = +2
Query: 164 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 343
+ + H+ + + ++FVG L ++++L+ FG GE+ + + +P T +S+G
Sbjct: 198 EEEHHDVLHERRKRKEFEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGS 257
Query: 344 AFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEF 523
AF+ F E + + + + N K A + +FVG + + + +R +
Sbjct: 258 AFLRFATVEQAKRAVKELKSPMINGKKCGVTASQDNDTLFVGNICKIWTPEALREKLKHY 317
Query: 524 G--TILEVEMPFDKTK-NQRKGFCFITFESEQVVNDLLK 631
G + ++ + D N +G+ F+ F S D K
Sbjct: 318 GVENMDDITLVEDSNNVNMNRGYAFLEFSSRSDAMDAHK 356
Score = 33.5 bits (73), Expect = 0.12
Identities = 20/79 (25%), Positives = 39/79 (49%)
Frame = +2
Query: 212 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 391
+ +F+ GL ++ +RD YG++E + + + + R + F F+ F E+ V
Sbjct: 391 KTIFIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHEA--AVSC 448
Query: 392 AGEHTINNKKVDPKKAKAR 448
A INN ++ + KA+
Sbjct: 449 A--KFINNSELGEGEDKAK 465
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 54.8 bits (126), Expect = 5e-08
Identities = 38/172 (22%), Positives = 81/172 (47%), Gaps = 21/172 (12%)
Frame = +2
Query: 164 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 343
++++ +A P + R++++G + T+++L +G +E + V D +GRSR F
Sbjct: 60 ETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRF 119
Query: 344 AFIVFKAPESIDKVM-AAGEHTINNKKV-------------DPKKAKARHG-------KI 460
F K+ E + V+ +T+ +++ D ++ K+
Sbjct: 120 GFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKV 179
Query: 461 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVV 616
+VG L+ ++ + + N FSE G ++ ++ ++ GF F+TF SE+ V
Sbjct: 180 YVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDV 231
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +2
Query: 203 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID- 379
D K++VG L+ T + L + F G++ S V P T +S GF F+ F + E ++
Sbjct: 174 DSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEA 233
Query: 380 KVMAAGEHTINNKKVDPKKA 439
++A + +K+ KA
Sbjct: 234 AIVALNNSLLEGQKIRVNKA 253
Score = 37.5 bits (83), Expect = 0.007
Identities = 15/70 (21%), Positives = 39/70 (55%)
Frame = +2
Query: 422 VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE 601
+DP AR ++++G + ++++++ E G + +V++ +DK + + F F T +
Sbjct: 68 LDPSSEAAR--RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMK 125
Query: 602 SEQVVNDLLK 631
S + N +++
Sbjct: 126 SVEDANAVVE 135
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 54.8 bits (126), Expect = 5e-08
Identities = 24/59 (40%), Positives = 39/59 (66%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 391
+LFV GLS TT+++L+D F ++G++ V TD ++GRS+GF F+ + E +K A
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKA 93
Score = 39.1 bits (87), Expect = 0.002
Identities = 14/48 (29%), Positives = 32/48 (66%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 598
++FV GLS +++++++ F+ FG +++ + D+ + KGF F+T+
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTY 82
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 54.8 bits (126), Expect = 5e-08
Identities = 22/58 (37%), Positives = 36/58 (62%)
Frame = +2
Query: 203 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 376
D++ + FVGGL+W T ++ + F +GE+ + D TGRS+GF F+ FK +S+
Sbjct: 41 DNEYRCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSM 98
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 607
+ FVGGL+ + I F+EFG + + ++ D+ + KGF F+TF+ E
Sbjct: 45 RCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDE 95
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 54.8 bits (126), Expect = 5e-08
Identities = 25/91 (27%), Positives = 47/91 (51%)
Frame = +2
Query: 338 GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFS 517
G I + I V+ + + ++ P + K++V GLS ++D +R+ F
Sbjct: 39 GTGVISARRRRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFE 98
Query: 518 EFGTILEVEMPFDKTKNQRKGFCFITFESEQ 610
+FG ++ + M DK N+ KGF F+ +E+E+
Sbjct: 99 QFGNLIHMNMVMDKVANRPKGFAFLRYETEE 129
Score = 48.4 bits (110), Expect = 4e-06
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 394
KL+V GLS+ TT+ LRD F +G + +N+ D R +GFAF+ ++ E K +
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAI-Q 136
Query: 395 GEH--TINNKKVDPKKAKAR 448
G H ++ + + ++AK R
Sbjct: 137 GMHGKFLDGRVIFVEEAKTR 156
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 54.0 bits (124), Expect = 8e-08
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 361
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFK 55
Score = 49.6 bits (113), Expect = 2e-06
Identities = 18/59 (30%), Positives = 40/59 (67%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 631
+ FVGGL+ +D++++ FS+FG +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 54.0 bits (124), Expect = 8e-08
Identities = 25/77 (32%), Positives = 43/77 (55%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 394
K+FVG L+W TT +LR +F +G++ NV ++ GRS+G+ FI F+ S + +
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQN 72
Query: 395 GEHTINNKKVDPKKAKA 445
+ I+ + + A A
Sbjct: 73 SKPIIDGRTTNCNLASA 89
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 598
KIFVG L+ + D++R +F +FG +++ + + + KG+ FITF
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITF 60
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 54.0 bits (124), Expect = 8e-08
Identities = 27/82 (32%), Positives = 46/82 (56%)
Frame = +2
Query: 179 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 358
+ AE PG L+V GLS T+++L DHF G++ +++ DP T SRGF FI
Sbjct: 38 SDAENPGNS----LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISM 93
Query: 359 KAPESIDKVMAAGEHTINNKKV 424
K+ ++ + + +H++ +V
Sbjct: 94 KSVGDANRCIRSLDHSVLQGRV 115
Score = 35.1 bits (77), Expect = 0.039
Identities = 14/59 (23%), Positives = 34/59 (57%)
Frame = +2
Query: 458 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 634
++V GLS +++ ++ + F++ G + +V + D + +GF FI+ +S N +++
Sbjct: 47 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRS 105
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 52.8 bits (121), Expect = 2e-07
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Frame = +2
Query: 140 GNAENGGG------DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESI 301
G+ +GGG S S G +L+VG LSW D L + F G++
Sbjct: 219 GSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEA 278
Query: 302 NVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKAR 448
V D ++GRS+GF F+ + + + K + + ++ +++ +A+AR
Sbjct: 279 RVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 328
Score = 51.6 bits (118), Expect = 4e-07
Identities = 26/92 (28%), Positives = 40/92 (43%)
Frame = +2
Query: 104 FAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 283
F +++ + ++ D D E D KLFVG LS+ +L F +
Sbjct: 63 FVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESA 122
Query: 284 GEIESINVKTDPNTGRSRGFAFIVFKAPESID 379
G +E + V D TGRSRGF F+ ++
Sbjct: 123 GNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/60 (31%), Positives = 34/60 (56%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 634
+++VG LS + D + N F+E G ++E + +D+ + KGF F+T S Q V + +
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 309
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 604
K+FVG LS + ++ F G + VE+ +DK + +GF F+T +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMST 149
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 52.8 bits (121), Expect = 2e-07
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Frame = +2
Query: 140 GNAENGGG------DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESI 301
G+ +GGG S S G +L+VG LSW D L + F G++
Sbjct: 227 GSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEA 286
Query: 302 NVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKAR 448
V D ++GRS+GF F+ + + + K + + ++ +++ +A+AR
Sbjct: 287 RVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 336
Score = 51.6 bits (118), Expect = 4e-07
Identities = 26/92 (28%), Positives = 40/92 (43%)
Frame = +2
Query: 104 FAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 283
F +++ + ++ D D E D KLFVG LS+ +L F +
Sbjct: 63 FVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESA 122
Query: 284 GEIESINVKTDPNTGRSRGFAFIVFKAPESID 379
G +E + V D TGRSRGF F+ ++
Sbjct: 123 GNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/60 (31%), Positives = 34/60 (56%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 634
+++VG LS + D + N F+E G ++E + +D+ + KGF F+T S Q V + +
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 604
K+FVG LS + ++ F G + VE+ +DK + +GF F+T +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMST 149
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/63 (39%), Positives = 35/63 (55%)
Frame = +2
Query: 203 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 382
+ K++VG L W T LR+HF +G I S V D TGR+R FAF+ F + E D
Sbjct: 209 ESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDA 268
Query: 383 VMA 391
++
Sbjct: 269 ALS 271
Score = 49.2 bits (112), Expect = 2e-06
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 25/141 (17%)
Frame = +2
Query: 257 ELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK-------APESIDKVMAAGEH---- 403
+L D F +G + S+ V +P TG SRG ++ A S+D G
Sbjct: 123 QLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVR 182
Query: 404 --------TINNKKV---DPKKA---KARHGKIFVGGLSSEISDDEIRNFFSEFGTILEV 541
T N +V PKK +++H K++VG L D +RN FS+FGTI+
Sbjct: 183 YSVDMNPGTRRNPEVLNSTPKKILMYESQH-KVYVGNLPWFTQPDGLRNHFSKFGTIVST 241
Query: 542 EMPFDKTKNQRKGFCFITFES 604
+ D+ + + F F++F S
Sbjct: 242 RVLHDRKTGRNRVFAFLSFTS 262
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 52.4 bits (120), Expect = 2e-07
Identities = 25/70 (35%), Positives = 44/70 (62%)
Frame = +2
Query: 164 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 343
DS+D + +E+P +KLF+ GLS+ T++K LR F +GE+ + + D + RS+G+
Sbjct: 267 DSRDQDDSESPPVKT-KKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY 325
Query: 344 AFIVFKAPES 373
AF+ + E+
Sbjct: 326 AFLEYTTEEA 335
Score = 48.0 bits (109), Expect = 5e-06
Identities = 24/88 (27%), Positives = 44/88 (50%)
Frame = +2
Query: 368 ESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEM 547
ES++K + + D + + K+F+ GLS S+ +R F FG ++EV++
Sbjct: 254 ESLNKDYEGDSTQDSRDQDDSESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKI 313
Query: 548 PFDKTKNQRKGFCFITFESEQVVNDLLK 631
DK + KG+ F+ + +E+ LK
Sbjct: 314 IMDKISKRSKGYAFLEYTTEEAAGTALK 341
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 52.4 bits (120), Expect = 2e-07
Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 8/157 (5%)
Frame = +2
Query: 158 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 337
G + +SAE R+ D ++VGGL + +++ L + F G + ++ V D T +
Sbjct: 10 GANLLGQHSAE---RNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQ 66
Query: 338 GFAFIVFKAPESID---KVMAA----GEHTINNKKVDPKKAKARHGKIFVGGLSSEISDD 496
+ FI +++ E D KV+ G+ NK KK+ +F+G L ++ +
Sbjct: 67 NYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEK 126
Query: 497 EIRNFFSEFGTIL-EVEMPFDKTKNQRKGFCFITFES 604
+ + FS FG I ++ D +GF FI+++S
Sbjct: 127 LLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDS 163
Score = 47.2 bits (107), Expect = 9e-06
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Frame = +2
Query: 182 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESI-NVKTDPNTGRSRGFAFIVF 358
S + D LF+G L + +K L D F A+G I S + DP+TG SRGF FI +
Sbjct: 102 SQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISY 161
Query: 359 KAPESIDKVMAA--GEHTINNK 418
+ E+ D + + G++ N +
Sbjct: 162 DSFEASDAAIESMTGQYLSNRQ 183
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 52.0 bits (119), Expect = 3e-07
Identities = 26/101 (25%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Frame = +2
Query: 131 QLNGNAENGGGDSQDHN---SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESI 301
++ AE G SQD + SA D R ++VG + + T +E++ HF + G + +
Sbjct: 73 EMQAKAEKDMGASQDPSGGVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRV 132
Query: 302 NVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 424
+ TD G+ +GFA++ F E++ + E ++ +++
Sbjct: 133 TILTD-KFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQI 172
Score = 35.5 bits (78), Expect = 0.030
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +2
Query: 431 KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESE 607
+K + I+VG + + +E++ F GT+ V + DK Q KGF ++ F E E
Sbjct: 96 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEVE 154
Query: 608 QVVNDLL 628
V N L+
Sbjct: 155 AVQNSLI 161
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 52.0 bits (119), Expect = 3e-07
Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 22/164 (13%)
Frame = +2
Query: 185 AEAPGRDDDR-KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 361
AE +++R KLFVG + T+ +L F + + +N+ + T RG F+
Sbjct: 2 AEETMENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCP 61
Query: 362 APESIDKVMAAGEHTINNKKV-----DPKKAKARHG----------------KIFVGGLS 478
E DKV+ ++ +NKK P + K G K+FVG L
Sbjct: 62 TREDADKVI----NSFHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLP 117
Query: 479 SEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 610
+S+ E+++ FSE+GTI ++++ + KG F+ +ES++
Sbjct: 118 KNVSETEVQSLFSEYGTIKDLQI-LRGSLQTSKGCLFLKYESKE 160
Score = 36.3 bits (80), Expect = 0.017
Identities = 15/60 (25%), Positives = 33/60 (55%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 634
K+FVG + +++ ++ F EF + EV + +KT +G CF+T + + + ++ +
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINS 72
Score = 34.7 bits (76), Expect = 0.052
Identities = 22/77 (28%), Positives = 38/77 (49%)
Frame = +2
Query: 218 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 397
LF+ + E D+EL F +G++ S V D TG S+ F FI + + + +
Sbjct: 341 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI--- 397
Query: 398 EHTINNKKVDPKKAKAR 448
+T+N ++ KK K +
Sbjct: 398 -NTMNGCQLSGKKLKVQ 413
Score = 32.3 bits (70), Expect = 0.28
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +2
Query: 209 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 388
+ KLFVG L ++ E++ F YG I+ + + + S+G F+ +++ E M
Sbjct: 108 EHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRG-SLQTSKGCLFLKYESKEQAVAAM 166
Query: 389 AA--GEHTINNKKV 424
A G H + V
Sbjct: 167 EALNGRHIMEGANV 180
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 51.2 bits (117), Expect = 6e-07
Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 21/160 (13%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM-- 388
KL+VGG+ +++T+ E+R +F + G I ++ K P G G AFI F + + +
Sbjct: 162 KLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRALAF 221
Query: 389 ---AAGEH--TINN--KKVDPKKAKAR------------HGKIFVGGLSSEISDDEIRNF 511
A G+ TI K P + + + ++++G L+ + ++ +IR
Sbjct: 222 DRAAMGDRYLTIQQYVKTTTPSIPRRKTSSGFAPEMVDGYNRVYIGNLAWDTTERDIRKL 281
Query: 512 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 631
FS+ I V + +K + KG+ + F+ V LK
Sbjct: 282 FSDC-VINSVRLGKNKETGEFKGYAHVDFKDSVSVAIALK 320
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/74 (25%), Positives = 39/74 (52%)
Frame = +2
Query: 203 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 382
D ++++G L+W+TT++++R F I S+ + + TG +G+A + FK S+
Sbjct: 259 DGYNRVYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAHVDFKDSVSVAI 317
Query: 383 VMAAGEHTINNKKV 424
+ + I + V
Sbjct: 318 ALKLDQQVICGRPV 331
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 51.2 bits (117), Expect = 6e-07
Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 20/151 (13%)
Frame = +2
Query: 212 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 391
+ LF G LS++ ++ + F GE+ + + + + G +G+ I F +PE K +
Sbjct: 384 KTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDD-GSFKGYGHIEFASPEEAQKALE 442
Query: 392 AGEHTI---------NNKKVDPKKAK-ARHGK------IFVGGLSSEISDDEI----RNF 511
+ N++ P+ + R G+ I+V G SS + +DEI R+
Sbjct: 443 MNGKLLLGRDVRLDLANERGTPRNSNPGRKGEGSQSRTIYVRGFSSSLGEDEIKKELRSH 502
Query: 512 FSEFGTILEVEMPFDKTKNQRKGFCFITFES 604
FS+ G + V +P D+ +GF +I S
Sbjct: 503 FSKCGEVTRVHVPTDRETGASRGFAYIDLTS 533
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = +2
Query: 152 NGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTD----KELRDHFGAYGEIESINVKTDP 319
N G ++ N R ++V G S + KELR HF GE+ ++V TD
Sbjct: 459 NERGTPRNSNPGRKGEGSQSRTIYVRGFSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDR 518
Query: 320 NTGRSRGFAFI 352
TG SRGFA+I
Sbjct: 519 ETGASRGFAYI 529
Score = 37.1 bits (82), Expect = 0.010
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Frame = +2
Query: 359 KAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE 538
K ++ V A + K + + +F G LS +I+ +I NFF E G +++
Sbjct: 353 KKDSDVEMVDAEQKSNAKQPKTPTNQTQGGSKTLFAGNLSYQIARSDIENFFKEAGEVVD 412
Query: 539 VEM-PFDKTKNQRKGFCFITFESEQVVNDLLK 631
V + FD KG+ I F S + L+
Sbjct: 413 VRLSSFD--DGSFKGYGHIEFASPEEAQKALE 442
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 51.2 bits (117), Expect = 6e-07
Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 10/149 (6%)
Frame = +2
Query: 194 PGRDDD--RKLFVGGLSWETTDKELRDHFGAYGEIESIN-VKTDPNTGRSRGFAFIVFKA 364
PG D R ++VG + + T+ L++ F + G +ES ++ D + S GF +
Sbjct: 51 PGFDPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKS---SYGFVHYFDRR 107
Query: 365 PESIDKVMAAGEHTINNK-KVD------PKKAKARHGKIFVGGLSSEISDDEIRNFFSEF 523
++ + G H KV+ ++ + H IFVG LS E++D + FS F
Sbjct: 108 SAALAILSLNGRHLFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVF 167
Query: 524 GTILEVEMPFDKTKNQRKGFCFITFESEQ 610
+ + + +D+ + +GF F++F ++Q
Sbjct: 168 SSCSDARVMWDQKTGRSRGFGFVSFRNQQ 196
Score = 46.0 bits (104), Expect = 2e-05
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = +2
Query: 179 NSAEAPGRDDDRK----LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 346
N A A G+ +D +FVG LS E TD L F + V D TGRSRGF
Sbjct: 129 NWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFG 188
Query: 347 FIVFK 361
F+ F+
Sbjct: 189 FVSFR 193
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 51.2 bits (117), Expect = 6e-07
Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 23/166 (13%)
Frame = +2
Query: 170 QDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAF 349
+D EA D R +F ++ T++++ + F G++ + + D + RSRG +
Sbjct: 168 EDKVEPEADPERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGY 227
Query: 350 IVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHG-----------------------KI 460
+ F S+ +A + + V K ++A ++
Sbjct: 228 VEFYDTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRL 287
Query: 461 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 598
+VG L +S+D++R F FG++ V++P D+T KGF F+ F
Sbjct: 288 YVGNLHINMSEDDLRKVFESFGSVELVQVPRDET-GLCKGFGFVQF 332
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 51.2 bits (117), Expect = 6e-07
Identities = 23/72 (31%), Positives = 40/72 (55%)
Frame = +2
Query: 179 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 358
+S G + ++FVGGL + T+ ++R+ ++G + N+ D TG S+G+AF V+
Sbjct: 364 SSGSTGGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVY 423
Query: 359 KAPESIDKVMAA 394
+ P D AA
Sbjct: 424 QDPSVTDIACAA 435
Score = 34.7 bits (76), Expect = 0.052
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 619
+IFVGGL ++ +IR FG + + D+ KG+ F ++ V +
Sbjct: 376 RIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTD 430
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 51.2 bits (117), Expect = 6e-07
Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 28/148 (18%)
Frame = +2
Query: 200 RDD--DRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPE 370
RDD D +FVG L+ + TD L + F A Y ++ V D TGR++G+ F+ F
Sbjct: 149 RDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDES 208
Query: 371 SIDKVM-----------------AAGEHTINNKKVDPKKAKA--------RHGKIFVGGL 475
+ M AA + + ++ + + A + +FVGGL
Sbjct: 209 EQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGL 268
Query: 476 SSEISDDEIRNFFSEFGTILEVEMPFDK 559
+ ++DD ++N FS++G I+ V++P K
Sbjct: 269 DASVTDDHLKNVFSQYGEIVHVKIPAGK 296
Score = 43.6 bits (98), Expect = 1e-04
Identities = 37/160 (23%), Positives = 74/160 (46%), Gaps = 16/160 (10%)
Frame = +2
Query: 182 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 361
S + D+ R L++G L + + L F GE+ S V + TG+ G+ FI F
Sbjct: 52 SVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFA 111
Query: 362 APESIDKVMAAGEHT-----------IN--NKKVDPKKAKARHGKIFVGGLSSEISD-DE 499
+ + ++V+ + +N + K+ + IFVG L+++++D
Sbjct: 112 SHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYIL 171
Query: 500 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF--ESEQV 613
+ F + + ++ ++ D+ + KG+ F+ F ESEQ+
Sbjct: 172 LETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQI 211
Score = 33.1 bits (72), Expect = 0.16
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +2
Query: 155 GGGDSQDHNSAEAPGRDDDRK--LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 328
G DS ++A +D +FVGGL TD L++ F YGEI + + G
Sbjct: 240 GQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCG 299
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 51.2 bits (117), Expect = 6e-07
Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 28/148 (18%)
Frame = +2
Query: 200 RDD--DRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPE 370
RDD D +FVG L+ + TD L + F A Y ++ V D TGR++G+ F+ F
Sbjct: 149 RDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDES 208
Query: 371 SIDKVM-----------------AAGEHTINNKKVDPKKAKA--------RHGKIFVGGL 475
+ M AA + + ++ + + A + +FVGGL
Sbjct: 209 EQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGL 268
Query: 476 SSEISDDEIRNFFSEFGTILEVEMPFDK 559
+ ++DD ++N FS++G I+ V++P K
Sbjct: 269 DASVTDDHLKNVFSQYGEIVHVKIPAGK 296
Score = 43.6 bits (98), Expect = 1e-04
Identities = 37/160 (23%), Positives = 74/160 (46%), Gaps = 16/160 (10%)
Frame = +2
Query: 182 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 361
S + D+ R L++G L + + L F GE+ S V + TG+ G+ FI F
Sbjct: 52 SVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFA 111
Query: 362 APESIDKVMAAGEHT-----------IN--NKKVDPKKAKARHGKIFVGGLSSEISD-DE 499
+ + ++V+ + +N + K+ + IFVG L+++++D
Sbjct: 112 SHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYIL 171
Query: 500 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF--ESEQV 613
+ F + + ++ ++ D+ + KG+ F+ F ESEQ+
Sbjct: 172 LETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQI 211
Score = 33.1 bits (72), Expect = 0.16
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +2
Query: 155 GGGDSQDHNSAEAPGRDDDRK--LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 328
G DS ++A +D +FVGGL TD L++ F YGEI + + G
Sbjct: 240 GQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCG 299
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 50.4 bits (115), Expect = 1e-06
Identities = 37/161 (22%), Positives = 71/161 (44%), Gaps = 15/161 (9%)
Frame = +2
Query: 170 QDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAF 349
Q H + + DD + L+VG L + L F GE+ S+ V + T +S G+ F
Sbjct: 94 QQHKAIDRGSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGF 153
Query: 350 IVFKAPESIDKVMAAGEHTINNKKVDP-----------KKAKARHG---KIFVGGLSSEI 487
+ F + + ++V+ ++ P +K +G +FVG LS ++
Sbjct: 154 VEFLSRAAAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDV 213
Query: 488 SDDEIRNFFSE-FGTILEVEMPFDKTKNQRKGFCFITFESE 607
+D + FS+ + ++ ++ D + KG+ F+ F E
Sbjct: 214 TDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDE 254
Score = 41.1 bits (92), Expect = 6e-04
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Frame = +2
Query: 371 SIDKVMAAGEHTINNKKV--DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVE 544
S V+ AG H N ++ + IFVGG+ ++ D+++R FS+FG ++ V+
Sbjct: 292 SSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVK 351
Query: 545 MPFDKTKNQRKGFCFITFESEQVVNDLLKT 634
+P KG F+ F + D +++
Sbjct: 352 IPVG------KGCGFVQFADRKSAEDAIES 375
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +2
Query: 152 NGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 328
+G S + S ++ G + +FVGG+ + D++LR F +GE+ S+ + G
Sbjct: 302 HGSNGSMGYGS-QSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCG 359
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 50.4 bits (115), Expect = 1e-06
Identities = 39/149 (26%), Positives = 72/149 (48%), Gaps = 10/149 (6%)
Frame = +2
Query: 194 PGRDDD--RKLFVGGLSWETTDKELRDHFGAYGEIESIN-VKTDPNTGRSRGFAFIVFKA 364
PG D R ++ G + + T+ L++ F + G IES ++ D + S GF +
Sbjct: 55 PGFDPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKS---SYGFVHYFDRR 111
Query: 365 PESIDKVMAAGEHTINNK-KVD------PKKAKARHGKIFVGGLSSEISDDEIRNFFSEF 523
S+ + G H KV+ ++ + H IFVG LS E++D + + FS F
Sbjct: 112 CASMAIMTLNGRHIFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAF 171
Query: 524 GTILEVEMPFDKTKNQRKGFCFITFESEQ 610
+ + + +D+ + +GF F++F ++Q
Sbjct: 172 NSCSDARVMWDQKTGRSRGFGFVSFRNQQ 200
Score = 50.0 bits (114), Expect = 1e-06
Identities = 29/71 (40%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = +2
Query: 161 GDSQDHNSAEAPGRDDDRK----LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 328
G N A A G+ +D +FVG LS E TD L D F A+ V D TG
Sbjct: 127 GQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTG 186
Query: 329 RSRGFAFIVFK 361
RSRGF F+ F+
Sbjct: 187 RSRGFGFVSFR 197
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 50.0 bits (114), Expect = 1e-06
Identities = 21/62 (33%), Positives = 34/62 (54%)
Frame = +2
Query: 203 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 382
+ + KLFVG LSW T + L F G++ V D +TGRSRG+ F+ + + ++
Sbjct: 174 ETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMET 233
Query: 383 VM 388
+
Sbjct: 234 AL 235
Score = 49.6 bits (113), Expect = 2e-06
Identities = 37/152 (24%), Positives = 64/152 (42%), Gaps = 12/152 (7%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE-------S 373
KL+ G L + L + E + V + +TG+SRGFAF+ E +
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 145
Query: 374 IDKVMAAGEHTINNKKVDPKKAK-----ARHGKIFVGGLSSEISDDEIRNFFSEFGTILE 538
+D G N PK K K+FVG LS ++ + + F E G ++
Sbjct: 146 LDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVG 205
Query: 539 VEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 634
+ FD + +G+ F+ + S+ + L++
Sbjct: 206 ARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/60 (36%), Positives = 37/60 (61%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 394
KL++GGLS T + L+D F ++ + V T+ TGRSRG+ F+ F + +S + ++A
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 628
K+++GGLS + +++ FS F + E + +K + +G+ F+ F SE N +
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAI 89
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 49.6 bits (113), Expect = 2e-06
Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 24/161 (14%)
Frame = +2
Query: 218 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK-APESIDKVMAA 394
++V L+ TTD +L++ FG YG+I S V D G+S+GF F+ F+ A ++ V +
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENADDAARAVESL 89
Query: 395 GEHTINNK---------------------KVDPKKA--KARHGKIFVGGLSSEISDDEIR 505
H ++K + + K+A K + ++V L ISD++++
Sbjct: 90 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLK 149
Query: 506 NFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 628
FS FGT+ ++ D KG F+ F + + + +
Sbjct: 150 EIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEEATEAM 189
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = +2
Query: 173 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFI 352
+ N EA + L+V L +D++L++ F +G + S V DPN G S+G F+
Sbjct: 119 EQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN-GTSKGSGFV 177
Query: 353 VFKAPESIDKVMA 391
F PE + M+
Sbjct: 178 AFATPEEATEAMS 190
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/76 (27%), Positives = 39/76 (51%)
Frame = +2
Query: 377 DKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFD 556
DK + G + ++ D K + ++V L+ +DD+++N F E+G I + D
Sbjct: 5 DKQVYVGPF-LRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD 63
Query: 557 KTKNQRKGFCFITFES 604
+ + KGF F+ FE+
Sbjct: 64 -GEGKSKGFGFVNFEN 78
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/71 (38%), Positives = 42/71 (59%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 394
K+FVGGLS T + L++ FG++G+I V D +G SRGF F+ + + E + M A
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96
Query: 395 GEHTINNKKVD 427
+ NK++D
Sbjct: 97 ----MQNKELD 103
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/59 (33%), Positives = 35/59 (59%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 631
KIFVGGLS + ++ F FG I++ + D+ +GF F+T++S +V N+ ++
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQ 95
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 49.6 bits (113), Expect = 2e-06
Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 9/148 (6%)
Frame = +2
Query: 194 PGRDDD--RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 367
PG D R ++VG + + T+ L++ F G +ES + + S GF +
Sbjct: 46 PGFDPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKS--SYGFVHYFDRRS 103
Query: 368 ESIDKVMAAGEHTINNK-KVD------PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 526
+ + G H KV+ ++ + H IFVG LS E++D + FS +
Sbjct: 104 AGLAILSLNGRHLFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYP 163
Query: 527 TILEVEMPFDKTKNQRKGFCFITFESEQ 610
T + + +D+ + +GF F++F ++Q
Sbjct: 164 TCSDARVMWDQKTGRSRGFGFVSFRNQQ 191
Score = 44.4 bits (100), Expect = 6e-05
Identities = 27/65 (41%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = +2
Query: 179 NSAEAPGRDDDRK----LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 346
N A A G+ +D +FVG LS E TD L F Y V D TGRSRGF
Sbjct: 124 NWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFG 183
Query: 347 FIVFK 361
F+ F+
Sbjct: 184 FVSFR 188
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +2
Query: 164 DSQDHNSAEAPGRDDD-RKLFVGGLSWETTDKELRDHFGAYGE--IESINVKTDPNTG 328
D +D + EAP + ++VG L+ E + +L HF + G IE + V+ D G
Sbjct: 243 DGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRDKGFG 300
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMA 391
KLF+GGLS+ TT++ L + F G++ + D + RS+GF F+ F + + K +M
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 392 AGEHTINNKKVDPKKAKAR 448
+N + + AKA+
Sbjct: 95 FNGQQLNGRTIFVDYAKAK 113
Score = 44.0 bits (99), Expect = 8e-05
Identities = 18/50 (36%), Positives = 32/50 (64%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 604
K+F+GGLS ++ + FS+ G ++E ++ D+ ++ KGF F+TF S
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFAS 84
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 49.2 bits (112), Expect = 2e-06
Identities = 26/66 (39%), Positives = 35/66 (53%)
Frame = +2
Query: 437 AKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVV 616
AK ++FV LS+ +D +R FS FG I E + D + KGF FITF+SE
Sbjct: 2 AKRISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDA 61
Query: 617 NDLLKT 634
LK+
Sbjct: 62 RKALKS 67
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/58 (37%), Positives = 32/58 (55%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 388
+LFV LS TTD+ LR F +G+I+ + D T R +GF FI F + + K +
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/52 (38%), Positives = 34/52 (65%)
Frame = +2
Query: 218 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 373
++VGG+ ++ T+ +L F YGEI +N+ D TG+S+GFAF+ ++ S
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRS 89
Score = 43.2 bits (97), Expect = 1e-04
Identities = 15/51 (29%), Positives = 34/51 (66%)
Frame = +2
Query: 458 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 610
++VGG+ ++++ ++ FS++G I++V + DK + KGF F+ +E ++
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQR 88
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 48.4 bits (110), Expect = 4e-06
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +2
Query: 209 DRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 385
D +FVG L+ + TD L++ F Y + V TDP+TGRS+G+ F+ F ++
Sbjct: 115 DHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRA 174
Query: 386 MA 391
MA
Sbjct: 175 MA 176
Score = 39.5 bits (88), Expect = 0.002
Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 17/156 (10%)
Frame = +2
Query: 203 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 382
++ R L++G L + + L F GE+ S+ V + TG+ G+ FI F + + ++
Sbjct: 21 EEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAER 80
Query: 383 V--------MAAGEHTI--------NNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFF 514
M E T + +KVD A H IFVG L+ +++D ++ F
Sbjct: 81 TLQTYNGTQMPGTELTFRLNWASFGSGQKVD---AGPDH-SIFVGDLAPDVTDYLLQETF 136
Query: 515 S-EFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 619
+ ++ ++ D + + KG+ F+ F E N
Sbjct: 137 RVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERN 172
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 48.4 bits (110), Expect = 4e-06
Identities = 38/163 (23%), Positives = 64/163 (39%), Gaps = 28/163 (17%)
Frame = +2
Query: 194 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 373
P + LF LS+ ++ + F GE+ + T+ + G RGF + F + E
Sbjct: 291 PAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEE 350
Query: 374 IDKVMAAGEHTINNKKV-----------------DPKKAKARHG-------KIFVGGLSS 481
K + + +++ P+ R G KIFV G +
Sbjct: 351 AQKALEFHGRPLLGREIRLDIAQERGERGERPAFTPQSGNFRSGGDGGDEKKIFVKGFDA 410
Query: 482 EISDDEIRN----FFSEFGTILEVEMPFDKTKNQRKGFCFITF 598
+S+D+I+N FS G I V +P D+ KG ++ F
Sbjct: 411 SLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEF 453
Score = 35.5 bits (78), Expect = 0.030
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Frame = +2
Query: 368 ESIDKVMAAGEHTINNKKVDPKKAKARHGK-IFVGGLSSEISDDEIRNFFSEFGTILEVE 544
+S D M E + + P A K +F LS I ++ NFF E G +++V
Sbjct: 268 KSSDVEMVDAEKSSAKQPKTPSTPAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVR 327
Query: 545 MPFDKTKNQRKGFCFITFESEQVVNDLLK 631
++ +GF + F S + L+
Sbjct: 328 FSTNRDDGSFRGFGHVEFASSEEAQKALE 356
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 48.4 bits (110), Expect = 4e-06
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 17/151 (11%)
Frame = +2
Query: 206 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKT--DPNTGRSRGFAFIVFKAPESID 379
+++ ++VG L + L F + E E ++VK + N G S G+ F+ F++ + D
Sbjct: 99 ENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVAD 158
Query: 380 KVMAAGEHTINNKKVDP-----------KKAKARHG---KIFVGGLSSEISDDEIRNFFS 517
KV+ T P +K +G IFVG LS ++SD+ + FS
Sbjct: 159 KVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFS 218
Query: 518 E-FGTILEVEMPFDKTKNQRKGFCFITFESE 607
E + ++ ++ D + KG+ F+ F E
Sbjct: 219 EKYPSVKAAKVVLDANTGRSKGYGFVRFGDE 249
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 209 DRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 385
D +FVG LS + +D L + F Y +++ V D NTGRS+G+ F+ F K
Sbjct: 196 DLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 255
Query: 386 M 388
M
Sbjct: 256 M 256
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 48.4 bits (110), Expect = 4e-06
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 17/151 (11%)
Frame = +2
Query: 206 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKT--DPNTGRSRGFAFIVFKAPESID 379
+++ ++VG L + L F + E E ++VK + N G S G+ F+ F++ + D
Sbjct: 99 ENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVAD 158
Query: 380 KVMAAGEHTINNKKVDP-----------KKAKARHG---KIFVGGLSSEISDDEIRNFFS 517
KV+ T P +K +G IFVG LS ++SD+ + FS
Sbjct: 159 KVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFS 218
Query: 518 E-FGTILEVEMPFDKTKNQRKGFCFITFESE 607
E + ++ ++ D + KG+ F+ F E
Sbjct: 219 EKYPSVKAAKVVLDANTGRSKGYGFVRFGDE 249
Score = 43.6 bits (98), Expect = 1e-04
Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 27/144 (18%)
Frame = +2
Query: 209 DRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 385
D +FVG LS + +D L + F Y +++ V D NTGRS+G+ F+ F K
Sbjct: 196 DLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 255
Query: 386 MA---AGEHTINNKKVDPKKAKARHGKIFVGG-----------------------LSSEI 487
M + + ++ P + +G GG L S +
Sbjct: 256 MTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSV 315
Query: 488 SDDEIRNFFSEFGTILEVEMPFDK 559
+D++++ F+EFG I+ V++P K
Sbjct: 316 TDEDLKQPFNEFGEIVSVKIPVGK 339
Score = 37.5 bits (83), Expect = 0.007
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Frame = +2
Query: 122 TDNQLNGNAENGGGDSQDHNSAEAPGRDD-DRKLFVGGLSWETTDKELRDHFGAYGEIES 298
T + NG + GG + + P D + +FVGGL TD++L+ F +GEI S
Sbjct: 275 TPRKTNGYQQQGG--YMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVS 332
Query: 299 INVKTDPNTGRSRGFAFIVFK--APESIDKV 385
+ + G+ GF V + A E+++K+
Sbjct: 333 VKIP----VGKGCGFVQFVNRPNAEEALEKL 359
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 48.0 bits (109), Expect = 5e-06
Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 25/154 (16%)
Frame = +2
Query: 173 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAF 349
+ AE P + +FVG L+ + TD L + F A Y ++ V D TGRS+G+ F
Sbjct: 164 ERRQAEGP----EHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGF 219
Query: 350 IVFKAPESIDKVMAA--GEHTIN---------NKK---VDPKKAKARHGK---------- 457
+ F + M G++ + NKK + P + G
Sbjct: 220 VRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTT 279
Query: 458 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDK 559
IFVG + +++D++++ F +FG ++ V++P K
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGK 313
Score = 46.4 bits (105), Expect = 2e-05
Identities = 43/169 (25%), Positives = 79/169 (46%), Gaps = 16/169 (9%)
Frame = +2
Query: 155 GGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRS 334
GGG SQ+ SA + R L++G L + L + FG GE + V + G S
Sbjct: 66 GGGGSQNPGSA-----GEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYS 120
Query: 335 RGFAFIVFKAPESIDK--------VMAAGEHT--INNKKV---DPKKAKARHGKIFVGGL 475
G+ FI F + ++ M + E +N ++ + ++A+ +FVG L
Sbjct: 121 EGYGFIEFVNHATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDL 180
Query: 476 SSEISDDEIRNFFSE-FGTILEVEMPFDKTKNQRKGFCFITF--ESEQV 613
+ +++D + F + ++ ++ D+T + KG+ F+ F ESEQ+
Sbjct: 181 APDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQI 229
Score = 28.3 bits (60), Expect = 4.5
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +2
Query: 218 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 328
+FVG + T+ +L+ FG +GE+ + + G
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCG 316
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 48.0 bits (109), Expect = 5e-06
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 394
+++VG LS TTD LR+ F YG + V D T RSRGF F+ + + + ++
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 395 GE-HTINNKKVDPK 433
+ +N ++V K
Sbjct: 64 MDGKELNGRRVSVK 77
Score = 41.5 bits (93), Expect = 4e-04
Identities = 16/50 (32%), Positives = 32/50 (64%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 604
+++VG LS +DD +R FS +G +++ + D+ ++ +GF F+T+ S
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSS 53
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 47.6 bits (108), Expect = 7e-06
Identities = 25/66 (37%), Positives = 34/66 (51%)
Frame = +2
Query: 194 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 373
P + LFV GLS TT + LR F +GE+ V TD +G S+GF F+ + E
Sbjct: 50 PQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLED 109
Query: 374 IDKVMA 391
K +A
Sbjct: 110 SAKGIA 115
Score = 37.9 bits (84), Expect = 0.006
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +2
Query: 458 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 598
+FV GLS + + +R F++FG + + ++ D+ KGF F+ +
Sbjct: 58 LFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRY 104
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 47.6 bits (108), Expect = 7e-06
Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Frame = +2
Query: 131 QLNGNAENGGGDSQDHNS--AEAPGRD--DDRKLFVGGLSWETTDKELRDHFGAYGEIES 298
++ E G +QD S A G++ D R ++VG + + T +E++ HF G +
Sbjct: 58 EMQAKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNR 117
Query: 299 INVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK--KVDPKK 436
+ + D G+ +GFA++ F E++ + + E ++ + KV PK+
Sbjct: 118 VTILMD-KFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKR 164
Score = 34.7 bits (76), Expect = 0.052
Identities = 20/86 (23%), Positives = 39/86 (45%)
Frame = +2
Query: 374 IDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPF 553
++K M A + + K + ++VG + + +E++ F GT+ V +
Sbjct: 63 VEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILM 122
Query: 554 DKTKNQRKGFCFITFESEQVVNDLLK 631
DK Q KGF ++ F + V + L+
Sbjct: 123 DKF-GQPKGFAYVEFVEVEAVQEALQ 147
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 47.6 bits (108), Expect = 7e-06
Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Frame = +2
Query: 131 QLNGNAENGGGDSQDHNS--AEAPGRD--DDRKLFVGGLSWETTDKELRDHFGAYGEIES 298
++ E G +QD S A G++ D R ++VG + + T +E++ HF G +
Sbjct: 58 EMQAKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNR 117
Query: 299 INVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK--KVDPKK 436
+ + D G+ +GFA++ F E++ + + E ++ + KV PK+
Sbjct: 118 VTILMD-KFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKR 164
Score = 34.7 bits (76), Expect = 0.052
Identities = 20/86 (23%), Positives = 39/86 (45%)
Frame = +2
Query: 374 IDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPF 553
++K M A + + K + ++VG + + +E++ F GT+ V +
Sbjct: 63 VEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILM 122
Query: 554 DKTKNQRKGFCFITFESEQVVNDLLK 631
DK Q KGF ++ F + V + L+
Sbjct: 123 DKF-GQPKGFAYVEFVEVEAVQEALQ 147
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 47.2 bits (107), Expect = 9e-06
Identities = 19/73 (26%), Positives = 41/73 (56%)
Frame = +2
Query: 206 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 385
D R +FVG + + T +E++ HF G + + + TD G+ +GFA++ F E++ +
Sbjct: 90 DARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTD-KFGQPKGFAYVEFVEVEAVQEA 148
Query: 386 MAAGEHTINNKKV 424
+ E ++ +++
Sbjct: 149 LQLNESELHGRQL 161
Score = 35.1 bits (77), Expect = 0.039
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Frame = +2
Query: 374 IDKVMAAGEH-TINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMP 550
++K M A + +I + ++ AR +FVG + + +E++ F GT+ V +
Sbjct: 67 VEKEMGAQDPASIAANQAGKEEVDAR--SVFVGNVDYACTPEEVQQHFQTCGTVHRVTIL 124
Query: 551 FDKTKNQRKGFCFITFESEQVVNDLLK 631
DK Q KGF ++ F + V + L+
Sbjct: 125 TDKF-GQPKGFAYVEFVEVEAVQEALQ 150
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 47.2 bits (107), Expect = 9e-06
Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 16/165 (9%)
Frame = +2
Query: 161 GDSQDHNSAEAPGRDDDRK-LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 337
G Q ++ PG D K L++G L + + F GE S V + TG+S
Sbjct: 42 GQHQYGIGSQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSE 101
Query: 338 GFAFIVFKAPESIDKV--------MAAGEHTINNKKVDPKKAKARHGK------IFVGGL 475
G+ FI F + ++V M + E T + R IFVG L
Sbjct: 102 GYGFIEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDL 161
Query: 476 SSEISDDEIRNFFSE-FGTILEVEMPFDKTKNQRKGFCFITFESE 607
+ E++D + + F +G++ ++ D+T + KG+ F+ F E
Sbjct: 162 APEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADE 206
Score = 42.3 bits (95), Expect = 3e-04
Identities = 15/31 (48%), Positives = 25/31 (80%)
Frame = +2
Query: 458 IFVGGLSSEISDDEIRNFFSEFGTILEVEMP 550
IFVGGL + ++DDE+++ F +FG +L V++P
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFGELLHVKIP 292
Score = 37.5 bits (83), Expect = 0.007
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +2
Query: 170 QDHNSAEAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 346
Q+ A A D ++ +FVGGL TD EL+ FG +GE+ ++VK P G+ GF
Sbjct: 245 QNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGEL--LHVKIPP--GKRCGFV 300
Query: 347 FIVFKA 364
KA
Sbjct: 301 QYANKA 306
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 47.2 bits (107), Expect = 9e-06
Identities = 23/74 (31%), Positives = 38/74 (51%)
Frame = +2
Query: 161 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRG 340
G S+ + + + L+V GLS TDK+L HF G++ S + +P T SRG
Sbjct: 55 GRSRSRSRGRSEVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRG 114
Query: 341 FAFIVFKAPESIDK 382
FAF+ + + ++
Sbjct: 115 FAFVTMSSLKDAER 128
Score = 31.5 bits (68), Expect = 0.48
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +2
Query: 458 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 604
++V GLS+ ++D ++ F++ G + + + +GF F+T S
Sbjct: 74 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSS 122
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 47.2 bits (107), Expect = 9e-06
Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 19/178 (10%)
Frame = +2
Query: 155 GGGDSQDHNSAEAPGRDDDR--KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 328
GG + S A D KL+V +S T+ ++R F YG + I + D TG
Sbjct: 89 GGSSLRKRRSQSATDNADGSIAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTG 148
Query: 329 RSRGFAFIVFKAPESIDKVMAA--GEHTINNKKVDPK-----KAKARHG----------K 457
+ FI +K E + +AA + T + + K + R G K
Sbjct: 149 ERAAYCFIKYKKVEEGNAAIAALTEQFTFPGEMLPVKVRFAEAERERIGFAPVQLPDNPK 208
Query: 458 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 631
++V L+ + + E+ FS +G I ++ M D K R G+ F+ F +++ +K
Sbjct: 209 LYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICR-GYAFVQFSCKEMALAAIK 265
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 46.8 bits (106), Expect = 1e-05
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 6/122 (4%)
Frame = +2
Query: 110 QDITTDNQLNGNAENGG-GDSQDHNSAEA-PGRD----DDRKLFVGGLSWETTDKELRDH 271
Q T N AENG DS + +A P + D+ F+ LS + ++++R
Sbjct: 611 QSATVPATKNVKAENGKTADSDKEETEDAKPLKPKVYRDECTAFISNLSVKAQEEDIRKF 670
Query: 272 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 451
FG G ++SI + +TG+ RG A+ F E + +A KK+ ++ +
Sbjct: 671 FGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMFFGKKISIARSNPKK 730
Query: 452 GK 457
GK
Sbjct: 731 GK 732
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 46.8 bits (106), Expect = 1e-05
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 6/122 (4%)
Frame = +2
Query: 110 QDITTDNQLNGNAENGG-GDSQDHNSAEA-PGRD----DDRKLFVGGLSWETTDKELRDH 271
Q T N AENG DS + +A P + D+ F+ LS + ++++R
Sbjct: 611 QSATVPATKNVKAENGKTADSDKEETEDAKPLKPKVYRDECTAFISNLSVKAQEEDIRKF 670
Query: 272 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 451
FG G ++SI + +TG+ RG A+ F E + +A KK+ ++ +
Sbjct: 671 FGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMFFGKKISIARSNPKK 730
Query: 452 GK 457
GK
Sbjct: 731 GK 732
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 46.8 bits (106), Expect = 1e-05
Identities = 29/99 (29%), Positives = 50/99 (50%)
Frame = +2
Query: 161 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRG 340
G + + + E+P R L+VGGL+ ++++RD F A+GEIESI + + +
Sbjct: 211 GKAGEMGTLESPEDQSIRTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAE------KA 264
Query: 341 FAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGK 457
AF+ + E +K A E N V+ ++ K G+
Sbjct: 265 CAFVTYTTREGAEK---AAEELSNRLVVNGQRLKLTWGR 300
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 46.8 bits (106), Expect = 1e-05
Identities = 27/99 (27%), Positives = 52/99 (52%)
Frame = +2
Query: 161 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRG 340
G + + + E+P + + L+VGGL+ ++++RD F A+GEIESI + D +
Sbjct: 211 GKAGEMGTLESPDDESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILAD------KA 264
Query: 341 FAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGK 457
AF+ + + E +K A + N ++ ++ K G+
Sbjct: 265 CAFVTYTSREGAEK---AAQELSNRLVINGQRLKLTWGR 300
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 46.0 bits (104), Expect = 2e-05
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Frame = +2
Query: 194 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF----- 358
P D L V +++ TT +L F YG++ + + D TG SRGFAF+ +
Sbjct: 10 PDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDE 69
Query: 359 --KAPESID-KVMAAGEHTINNKKVDPKKAKARHGKI 460
KA E +D +V+ E T+ K P K G++
Sbjct: 70 AHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRV 106
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 46.0 bits (104), Expect = 2e-05
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Frame = +2
Query: 194 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF----- 358
P D L V +++ TT +L F YG++ + + D TG SRGFAF+ +
Sbjct: 10 PDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDE 69
Query: 359 --KAPESID-KVMAAGEHTINNKKVDPKKAKARHGKI 460
KA E +D +V+ E T+ K P K G++
Sbjct: 70 AHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRV 106
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = +2
Query: 218 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 382
L+V GLS TDK+L HF G++ S + +P T SRGFAF+ + + ++
Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAER 127
Score = 31.5 bits (68), Expect = 0.48
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +2
Query: 458 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 604
++V GLS+ ++D ++ F++ G + + + +GF F+T S
Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSS 121
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Frame = +2
Query: 188 EAPGRDD-DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK- 361
E DD +R LF+ L ++ T +E++ F +GE+ES+++ T R G AF+ FK
Sbjct: 552 ETQDNDDFERTLFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKT 611
Query: 362 APESIDKVMAA 394
A S+ + AA
Sbjct: 612 ADASVAAISAA 622
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Frame = +2
Query: 158 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 337
G + ++ E + V GL + T+ +L + F G + + T+ + R
Sbjct: 2 GKNKRERKDGEEKSPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHR 61
Query: 338 GFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKAR 448
GFAF+ F E +++ + T+ +++ K+A R
Sbjct: 62 GFAFVKFALQEDVNRAIELKNGSTVGGRRITVKQAAHR 99
Score = 35.1 bits (77), Expect = 0.039
Identities = 17/68 (25%), Positives = 34/68 (50%)
Frame = +2
Query: 416 KKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFIT 595
+K +K+ + V GL I++ ++ FSE G + + +K ++ +GF F+
Sbjct: 8 RKDGEEKSPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVK 67
Query: 596 FESEQVVN 619
F ++ VN
Sbjct: 68 FALQEDVN 75
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 358
KL + L ++ +++ F A G + + + + TG +GFAF+ F
Sbjct: 332 KLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKF 379
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/57 (33%), Positives = 34/57 (59%)
Frame = +2
Query: 218 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 388
LFV G+S+ +T++ L F YG++ ++V D R +GFA++ F + E +K +
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
Score = 45.2 bits (102), Expect = 4e-05
Identities = 17/51 (33%), Positives = 35/51 (68%)
Frame = +2
Query: 458 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 610
+FV G+S +++ + FS++G +L+V++ DK + + KGF ++TF S++
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKE 73
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 44.8 bits (101), Expect = 5e-05
Identities = 20/61 (32%), Positives = 39/61 (63%)
Frame = +2
Query: 176 HNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIV 355
+N A G D + LFV L++E+++ +++ F +YG I+ +++ TD T + +G+AFI
Sbjct: 127 NNDPNATG-DPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIE 185
Query: 356 F 358
+
Sbjct: 186 Y 186
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +2
Query: 425 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 598
DP + +FV L+ E S+ +I+ F +G I V + D+ N+ KG+ FI +
Sbjct: 129 DPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEY 186
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 44.8 bits (101), Expect = 5e-05
Identities = 30/75 (40%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Frame = +2
Query: 161 GDSQDHNSAEAPGRDDDRK----LFVGGLSWETTDKELRDHFGAYGEIESI----NVKTD 316
G N A A G+ +D +FVG LS E TD L D F A+ S V D
Sbjct: 127 GQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWD 186
Query: 317 PNTGRSRGFAFIVFK 361
TGRSRGF F+ F+
Sbjct: 187 QKTGRSRGFGFVSFR 201
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 44.4 bits (100), Expect = 6e-05
Identities = 20/66 (30%), Positives = 38/66 (57%)
Frame = +2
Query: 197 GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 376
G + ++FVGGL + T+ ++R+ ++G ++ ++ D TG S+G+AF V++
Sbjct: 354 GLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVT 413
Query: 377 DKVMAA 394
D AA
Sbjct: 414 DIACAA 419
Score = 35.1 bits (77), Expect = 0.039
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 619
+IFVGGL ++ ++R FG + ++ D+ KG+ F ++ V +
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTD 414
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 44.4 bits (100), Expect = 6e-05
Identities = 20/66 (30%), Positives = 38/66 (57%)
Frame = +2
Query: 197 GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 376
G + ++FVGGL + T+ ++R+ ++G ++ ++ D TG S+G+AF V++
Sbjct: 354 GLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVT 413
Query: 377 DKVMAA 394
D AA
Sbjct: 414 DIACAA 419
Score = 35.1 bits (77), Expect = 0.039
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 619
+IFVGGL ++ ++R FG + ++ D+ KG+ F ++ V +
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTD 414
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 44.4 bits (100), Expect = 6e-05
Identities = 20/66 (30%), Positives = 38/66 (57%)
Frame = +2
Query: 197 GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 376
G + ++FVGGL + T+ ++R+ ++G ++ ++ D TG S+G+AF V++
Sbjct: 354 GLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVT 413
Query: 377 DKVMAA 394
D AA
Sbjct: 414 DIACAA 419
Score = 35.1 bits (77), Expect = 0.039
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 619
+IFVGGL ++ ++R FG + ++ D+ KG+ F ++ V +
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTD 414
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 44.4 bits (100), Expect = 6e-05
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +2
Query: 221 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVM 388
FV GL +T +K+L D F +G + + D +TG+SR F F+ F+ +S+ D +M
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIM 66
Score = 44.4 bits (100), Expect = 6e-05
Identities = 16/56 (28%), Positives = 35/56 (62%)
Frame = +2
Query: 461 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 628
FV GL + + ++ + FS+FG +++ ++ +D+ + + F F+TFE E+ + D +
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAI 65
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 44.0 bits (99), Expect = 8e-05
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 11/131 (8%)
Frame = +2
Query: 182 SAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 358
S E P G R LFV ++ D EL F +GEI S+ +SRGF I +
Sbjct: 174 SVEHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTAC-----KSRGFVMISY 228
Query: 359 KAPESIDKVMAAGEHTINNK----------KVDPKKAKARHGKIFVGGLSSEISDDEIRN 508
+ M A ++T+ K K +P + G + + + + +S+DE+
Sbjct: 229 YDIRAAHAAMRALQNTLLRKRTLDIHFSIPKENPSEKDMNQGTLVIFNVDTTVSNDELLQ 288
Query: 509 FFSEFGTILEV 541
F +G I E+
Sbjct: 289 LFGAYGEIREI 299
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 44.0 bits (99), Expect = 8e-05
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 11/131 (8%)
Frame = +2
Query: 182 SAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 358
S E P G R LFV ++ D EL F +GEI S+ +SRGF I +
Sbjct: 187 SVEHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTAC-----KSRGFVMISY 241
Query: 359 KAPESIDKVMAAGEHTINNK----------KVDPKKAKARHGKIFVGGLSSEISDDEIRN 508
+ M A ++T+ K K +P + G + + + + +S+DE+
Sbjct: 242 YDIRAAHAAMRALQNTLLRKRTLDIHFSIPKENPSEKDMNQGTLVIFNVDTTVSNDELLQ 301
Query: 509 FFSEFGTILEV 541
F +G I E+
Sbjct: 302 LFGAYGEIREI 312
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 44.0 bits (99), Expect = 8e-05
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = +2
Query: 212 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 373
R +FVG + ++ T+++LR+ G G + S + TD TG+ +G+ F +K E+
Sbjct: 9 RCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEET 62
Score = 33.1 bits (72), Expect = 0.16
Identities = 11/51 (21%), Positives = 28/51 (54%)
Frame = +2
Query: 458 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 610
+FVG + + +++++R E G ++ + D+ + KG+ F ++ E+
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEE 61
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/64 (31%), Positives = 35/64 (54%)
Frame = +2
Query: 218 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 397
LFVG LS TT+ LR+ YG I+++ + TG SRG+ F+ ++ + + +
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
Query: 398 EHTI 409
H++
Sbjct: 126 HHSL 129
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Frame = +2
Query: 167 SQDHNSAEAPGRDDDRK------LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 328
S+D S + GR ++ + V G+ ET ++++ + FG +GEI+++N+ D +G
Sbjct: 74 SRDFESLGSDGRPGPQRSVEGWIILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSG 133
Query: 329 RSRGFAFIVFKAPESIDKVMAA 394
+G+A I ++ E ++A
Sbjct: 134 YVKGYALIEYEKKEEAQSAISA 155
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +2
Query: 458 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 610
I V G+ E +++I N F +FG I + + D+ KG+ I +E ++
Sbjct: 97 ILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKE 147
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 43.2 bits (97), Expect = 1e-04
Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 27/144 (18%)
Frame = +2
Query: 209 DRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 385
D +FVG L+ + +D L + F Y +++ V D NTGRS+G+ F+ F K
Sbjct: 198 DLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 257
Query: 386 MA---AGEHTINNKKVDPKKAKARHGKIFVGG-----------------------LSSEI 487
M + + ++ P + +G GG L S +
Sbjct: 258 MTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSV 317
Query: 488 SDDEIRNFFSEFGTILEVEMPFDK 559
+D++++ FSEFG I+ V++P K
Sbjct: 318 TDEDLKQPFSEFGEIVSVKIPVGK 341
Score = 39.1 bits (87), Expect = 0.002
Identities = 37/151 (24%), Positives = 71/151 (47%), Gaps = 17/151 (11%)
Frame = +2
Query: 206 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN--TGRSRGFAFIVFKAPESID 379
+++ ++VG L + L F + E E +++K N G S G+ F+ F++ + D
Sbjct: 101 ENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVAD 160
Query: 380 KVM-----AAGEHTINNKKVD------PKKAKARHG---KIFVGGLSSEISDDEIRNFFS 517
KV+ A +T +++ +K +G IFVG L+ ++SD + FS
Sbjct: 161 KVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFS 220
Query: 518 E-FGTILEVEMPFDKTKNQRKGFCFITFESE 607
E + ++ ++ D + KG+ F+ F E
Sbjct: 221 EKYPSVKAAKVVLDANTGRSKGYGFVRFGDE 251
Score = 37.5 bits (83), Expect = 0.007
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Frame = +2
Query: 122 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESI 301
T + NG + GG + G + +FVGGL TD++L+ F +GEI S+
Sbjct: 277 TPRKTNGYQQQGGY-MPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSV 335
Query: 302 NVKTDPNTGRSRGFAFIVFK--APESIDKV 385
+ G+ GF V + A E+++K+
Sbjct: 336 KIP----VGKGCGFVQFVNRPNAEEALEKL 361
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 42.3 bits (95), Expect = 3e-04
Identities = 26/79 (32%), Positives = 41/79 (51%)
Frame = +2
Query: 167 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 346
+QDH SA + V GLS ++T+++L +G + + V + N+G SRGFA
Sbjct: 288 NQDHFSATPSAT-----VVVKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFA 342
Query: 347 FIVFKAPESIDKVMAAGEH 403
FI F ++ +M EH
Sbjct: 343 FIDFPTVDAARTMMDRIEH 361
Score = 40.3 bits (90), Expect = 0.001
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = +2
Query: 218 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 397
L V GL + ++ LR F + I+ + + D T SRGFAF+ F + E K + A
Sbjct: 460 LVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEAT 519
Query: 398 EHTI---NNKKVDPKKAKARHG 454
T N K + AK+ HG
Sbjct: 520 NRTALERNGKILRVAYAKSVHG 541
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/57 (21%), Positives = 29/57 (50%)
Frame = +2
Query: 458 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 628
+ V GLS + +++++ +E+G + V + ++ +GF FI F + ++
Sbjct: 300 VVVKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVDAARTMM 356
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +2
Query: 212 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 391
R +FV + + T L HF +GE+ + TDP TG+ G A+I F E+ + ++
Sbjct: 516 RTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENALS 575
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +2
Query: 458 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 628
IFV + + D + F++FG +L+ + D Q G +I F ++ + L
Sbjct: 518 IFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENAL 574
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +2
Query: 200 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 379
R+D+ + V LS +T + +L + F +G + + V D TG SRGF F+ F + E
Sbjct: 209 RNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQ 268
Query: 380 KVM 388
+ +
Sbjct: 269 RAI 271
Score = 30.7 bits (66), Expect = 0.84
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +2
Query: 464 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 610
V LS + + ++ F FG + V + D+ +GF F+ F S +
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSRE 265
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 42.3 bits (95), Expect = 3e-04
Identities = 25/61 (40%), Positives = 39/61 (63%)
Frame = +2
Query: 218 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 397
L+VG L+ ETT+ +L + FG YG+I+ I V + SRGFAFI ++ +++ +AA
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVYS------SRGFAFIYYR---HVEEAVAAK 70
Query: 398 E 400
E
Sbjct: 71 E 71
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 458 IFVGGLSSEISDDEIRNFFSEFGTI 532
++VGG+ +S D++ FS+FG I
Sbjct: 252 LWVGGIGPNVSKDDLEEEFSKFGKI 276
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/68 (29%), Positives = 36/68 (52%)
Frame = +2
Query: 167 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 346
SQ+ + E + RKLFV L W + ++ + FG G + ++ + + G++RGFA
Sbjct: 80 SQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKD-GKNRGFA 138
Query: 347 FIVFKAPE 370
F+ + E
Sbjct: 139 FVTMASGE 146
Score = 38.7 bits (86), Expect = 0.003
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +2
Query: 191 APGRDDDRKLFVGGLSWETTDKELRDHFGA--YGEIESINVKTDPNTGRSRGFAFIVFKA 364
APG D KL+V L+W+ LR+ F A + + + V DP GRS G+ F+ F
Sbjct: 188 APG-DTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPE-GRSSGYGFVSFAT 245
Query: 365 PESIDKVM 388
E + +
Sbjct: 246 REEAENAI 253
Score = 37.1 bits (82), Expect = 0.010
Identities = 22/76 (28%), Positives = 37/76 (48%)
Frame = +2
Query: 377 DKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFD 556
+K +A E T +K + + K+FV L +S ++I F + GT+ VE+
Sbjct: 70 EKETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQ 129
Query: 557 KTKNQRKGFCFITFES 604
K + +GF F+T S
Sbjct: 130 K-DGKNRGFAFVTMAS 144
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = +2
Query: 188 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTD 316
E P + + L+VGGL+ ++++ DHF AYGE+ESI V +
Sbjct: 217 EPPEDESIKTLYVGGLNSRIFEQDIHDHFYAYGEMESIRVMAE 259
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 41.9 bits (94), Expect = 3e-04
Identities = 14/58 (24%), Positives = 35/58 (60%)
Frame = +2
Query: 458 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 631
+++G + +SD + + + G ++++ +P DK ++ KGF F +E+E++ + +K
Sbjct: 9 VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYAVK 66
Score = 31.5 bits (68), Expect = 0.48
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +2
Query: 218 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 379
+++G + +D+ L D G + +++ D T + +GFAF ++ E D
Sbjct: 9 VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIAD 62
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 41.9 bits (94), Expect = 3e-04
Identities = 44/164 (26%), Positives = 69/164 (42%), Gaps = 26/164 (15%)
Frame = +2
Query: 218 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI------- 376
++V L TD +L+ FG +GEI S V D G+SR F F+ F+ E+
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKD-GEGKSRRFGFVNFEKAEAAVTAIEKM 179
Query: 377 ------DKVMAAGEHTINNKKVDPKKAK-----------ARHG-KIFVGGLSSEISDDEI 502
+K + G + + KAK R G ++V L + + ++
Sbjct: 180 NGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKL 239
Query: 503 RNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE-SEQVVNDLLK 631
FSEFGTI ++ + KG F+ F SE+ +LK
Sbjct: 240 EELFSEFGTITSCKV-MVHSNGISKGVGFVEFSTSEEASKAMLK 282
Score = 37.1 bits (82), Expect = 0.010
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +2
Query: 425 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 604
DP + G +FV L I + ++ + FS FG +L ++ D KG+ F+ F S
Sbjct: 22 DPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARD-ASGVSKGYGFVQFYS 80
Query: 605 E 607
+
Sbjct: 81 D 81
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 41.9 bits (94), Expect = 3e-04
Identities = 16/47 (34%), Positives = 29/47 (61%)
Frame = +2
Query: 458 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 598
++VGGL+ E+++ + F FG I +V+ P D+ + + F F+TF
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTF 61
Score = 35.1 bits (77), Expect = 0.039
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +2
Query: 218 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 388
L+VGGL+ E + L F +G+I+ + D + R F F+ F E M
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAM 71
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 41.5 bits (93), Expect = 4e-04
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +2
Query: 209 DRKLFVGGLSWETTDKELRDHF-GAYGEIESINVKTDPNTGRSRGFAFIVF 358
D +FVG L+ + +D L + F G Y ++ V D NTGRS+G+ F+ F
Sbjct: 212 DLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRF 262
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/56 (32%), Positives = 34/56 (60%)
Frame = +2
Query: 392 AGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDK 559
AG H N D ++ + IFVGGL ++++++++ FS+FG ++ V++P K
Sbjct: 310 AGGHGGNGSMSD---GESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGK 362
Score = 37.1 bits (82), Expect = 0.010
Identities = 22/96 (22%), Positives = 43/96 (44%)
Frame = +2
Query: 131 QLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVK 310
Q NG+ N + + G ++ +FVGGL + T+++L F +GE+ S+ +
Sbjct: 300 QQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIP 359
Query: 311 TDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK 418
+G F+ F +S ++ + T+ K
Sbjct: 360 V------GKGCGFVQFANRQSAEEAIGNLNGTVIGK 389
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 41.1 bits (92), Expect = 6e-04
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +2
Query: 218 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 367
LFVG L W TTD EL YG ++ + + +G+S+G+ + F P
Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDP 285
Score = 31.5 bits (68), Expect = 0.48
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 458 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 598
+FVG L +D E+ ++G + EV+ +K + KG+C + F
Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEF 282
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 41.1 bits (92), Expect = 6e-04
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = +2
Query: 458 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 631
+++G +S +++++ FS G I ++ M DK GFCF+ F S + D +K
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVK 93
Score = 40.7 bits (91), Expect = 8e-04
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = +2
Query: 218 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 379
+++G +S+ TT+++L + F GEI+ I + D NT GF F++F + E +
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTE 89
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 40.7 bits (91), Expect = 8e-04
Identities = 45/185 (24%), Positives = 77/185 (41%), Gaps = 40/185 (21%)
Frame = +2
Query: 197 GRDDDRKL----FVGGLSWETTDKELRDHFGAYGEIESINVKTDP--------------- 319
G DD+ KL FVG L + K + F +GE+ES+ +++ P
Sbjct: 162 GFDDESKLLRTVFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVPIVDSKRTRKGAIMLK 221
Query: 320 --NTGRSRGFAFIVFKAPESIDKVMA------AGEHTINNKKVDPKKAKARHG------- 454
N S A++VF+ +S +A G H ++ P+K + H
Sbjct: 222 QINEKASSVHAYVVFETEQSAAASLAHNMSLIDGNHVRVDRACPPRKKQKGHDDTHLYDP 281
Query: 455 --KIFVGGLSSEISDDEIRNFF---SEFGTILE-VEMPFDKTKNQRKGFCFITFESEQVV 616
+F+G L ++ D+E+ F S +E V + D N KG ++ F++ +
Sbjct: 282 KRTVFMGNLPFDVKDEEVYQLFTGKSNLENSIEAVRVIRDPHLNIGKGIAYVLFKTREAA 341
Query: 617 NDLLK 631
N +LK
Sbjct: 342 NLVLK 346
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Frame = +2
Query: 203 DDDRKLFVGGLSWETTDKELRDHF----GAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 370
D R +F+G L ++ D+E+ F IE++ V DP+ +G A+++FK E
Sbjct: 280 DPKRTVFMGNLPFDVKDEEVYQLFTGKSNLENSIEAVRVIRDPHLNIGKGIAYVLFKTRE 339
Query: 371 SIDKVMAAGEHTINNKKVDPKKAK 442
+ + V+ G + +++ + K
Sbjct: 340 AANLVLKKGYLKLRERELRISRVK 363
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = +2
Query: 203 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 382
DD ++VGGL ++ T++ +R F YG + ++ + D + R + + F+ F S D
Sbjct: 4 DDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSV-RGKCYGFVTFSNRRSADD 62
Query: 383 VMAAGE-HTINNKKVDPKKAKARHGKIFVG 469
+ + +I + V R G++ G
Sbjct: 63 AIEDMDGKSIGGRAVRVNDVTTRGGRMNPG 92
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 607
KI V L S+D ++ FS FG I EV++ D+ + KG+ FI F S+
Sbjct: 41 KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQ 91
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 370
K+ V L + T++ L+ F A+GEI + + D RS+G+AFI F + +
Sbjct: 41 KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQD 92
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 39.9 bits (89), Expect = 0.001
Identities = 28/97 (28%), Positives = 42/97 (43%)
Frame = +2
Query: 158 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 337
G +D +E P ++D +LF G L E D L F + V D TG+++
Sbjct: 121 GQSWEDPTLSEWP--ENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTK 178
Query: 338 GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 448
G+ F+ F P +AA +N K V + K R
Sbjct: 179 GYGFVSFLNPAD----LAAALKEMNGKYVGNRPIKLR 211
Score = 36.3 bits (80), Expect = 0.017
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 598
++F G L +E++DD + F+ F T ++ DK + KG+ F++F
Sbjct: 138 RLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSF 185
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +2
Query: 161 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRG 340
G + ++ R D+ + V LS +T +L + F +G + +V D T SRG
Sbjct: 157 GADRKAGGSDMRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRG 216
Query: 341 FAFIVFKAPESIDKVM 388
F F+ F + E + +
Sbjct: 217 FGFVSFVSREDAQRAI 232
Score = 32.3 bits (70), Expect = 0.28
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +2
Query: 413 NKKVDPKKAKARHGK--IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFC 586
++K ++RH + + V LS + ++ F FG + + D+ + +GF
Sbjct: 159 DRKAGGSDMRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFG 218
Query: 587 FITFESEQ 610
F++F S +
Sbjct: 219 FVSFVSRE 226
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +2
Query: 458 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQV 613
+++G + + EI FFS+FGT+ V + +K + K F FI FE +V
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEV 113
Score = 38.7 bits (86), Expect = 0.003
Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Frame = +2
Query: 158 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 337
GG ++ P ++ L++G + + E+ F +G ++ + V + TG+S+
Sbjct: 42 GGPARKAPVTTPPLQNKATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSK 101
Query: 338 GFAFIVFKAPESIDKVMAAG--------EHTINNKKVDPKKAK 442
F FI F+ PE + +AAG EH + ++P+ K
Sbjct: 102 HFGFIQFEDPEVAE--IAAGAMNDYLLMEHMLKVHVIEPENVK 142
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/66 (27%), Positives = 35/66 (53%)
Frame = +2
Query: 218 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 397
L+V L + T+ ++ F +G++ + V D +T +SRG AF+++ + E K +
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
Query: 398 EHTINN 415
+ I N
Sbjct: 119 DAKILN 124
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 39.5 bits (88), Expect = 0.002
Identities = 38/144 (26%), Positives = 59/144 (40%), Gaps = 11/144 (7%)
Frame = +2
Query: 143 NAENGGGD-SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDP 319
N NG G + +H E P R LFV ++ D EL F YG+I ++
Sbjct: 148 NIPNGAGTVAGEHPYGEHPSRT----LFVRNINSNVEDSELTALFEQYGDIRTLY----- 198
Query: 320 NTGRSRGFAFIVFKAPESIDKVMAAGEH-TINNKKVD---------PKKAKARHGKIFVG 469
T + RGF I + S M + ++ + +K+D P + G + V
Sbjct: 199 TTCKHRGFVMISYYDIRSARMAMRSLQNKPLRRRKLDIHFSIPKDNPSEKDMNQGTLVVF 258
Query: 470 GLSSEISDDEIRNFFSEFGTILEV 541
L IS+D++ F G I E+
Sbjct: 259 NLDPSISNDDLHGIFGAHGEIKEI 282
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 39.5 bits (88), Expect = 0.002
Identities = 38/144 (26%), Positives = 59/144 (40%), Gaps = 11/144 (7%)
Frame = +2
Query: 143 NAENGGGD-SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDP 319
N NG G + +H E P R LFV ++ D EL F YG+I ++
Sbjct: 148 NIPNGAGTVAGEHPYGEHPSRT----LFVRNINSNVEDSELTALFEQYGDIRTLY----- 198
Query: 320 NTGRSRGFAFIVFKAPESIDKVMAAGEH-TINNKKVD---------PKKAKARHGKIFVG 469
T + RGF I + S M + ++ + +K+D P + G + V
Sbjct: 199 TTCKHRGFVMISYYDIRSARMAMRSLQNKPLRRRKLDIHFSIPKDNPSEKDMNQGTLVVF 258
Query: 470 GLSSEISDDEIRNFFSEFGTILEV 541
L IS+D++ F G I E+
Sbjct: 259 NLDPSISNDDLHGIFGAHGEIKEI 282
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +2
Query: 218 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 358
LFVG L W TTD E+ YG ++ I + +G+S+G+ + F
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEF 250
Score = 34.3 bits (75), Expect = 0.068
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +2
Query: 458 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 598
+FVG L +D EI + S++G + E++ ++ + KG+C + F
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEF 250
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/81 (27%), Positives = 37/81 (45%)
Frame = +2
Query: 167 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 346
S+DH S+ G L + L + +LRD F +G ++ I + + TG RGF
Sbjct: 38 SRDHESSGPSG------LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFG 91
Query: 347 FIVFKAPESIDKVMAAGEHTI 409
F+ ++ E + M H +
Sbjct: 92 FVKYRYAEDAAEAMKRMNHKV 112
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/58 (17%), Positives = 29/58 (50%)
Frame = +2
Query: 458 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 631
+ + L + +++R+ F FG + ++ +P + + +GF F+ + + + +K
Sbjct: 49 LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMK 106
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 449 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 598
HG + V + + +E+R F FG + +V +P D Q +GF F+ F
Sbjct: 46 HGSLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEF 95
Score = 35.1 bits (77), Expect = 0.039
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 218 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 358
L V + + +ELR+ F +G + + + D +G+ RGFAF+ F
Sbjct: 49 LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEF 95
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +2
Query: 167 SQDHNSAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 343
S+DH S + G + KL++ L + ++++++ F GE++ V D +GRS+G
Sbjct: 70 SEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGT 128
Query: 344 AFIVF 358
A +V+
Sbjct: 129 AEVVY 133
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +2
Query: 167 SQDHNSAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 343
S+DH S + G + KL++ L + ++++++ F GE++ V D +GRS+G
Sbjct: 6 SEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGT 64
Query: 344 AFIVF 358
A +V+
Sbjct: 65 AEVVY 69
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +2
Query: 167 SQDHNSAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 343
S+DH S + G + KL++ L + ++++++ F GE++ V D +GRS+G
Sbjct: 72 SEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGT 130
Query: 344 AFIVF 358
A +V+
Sbjct: 131 AEVVY 135
Score = 31.5 bits (68), Expect = 0.48
Identities = 21/102 (20%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Frame = +2
Query: 308 KTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHG-----KIFVGG 472
+ +PN +R + KAPES G +++ D + ++ G K+++
Sbjct: 40 RNNPNRKSTRSAPYQSAKAPES-----TWGHDMFSDRSEDHRSGRSSAGIETGTKLYISN 94
Query: 473 LSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 598
L + +++I+ F+E G + + FD++ + KG + +
Sbjct: 95 LDYGVMNEDIKELFAEVGELKRYTVHFDRS-GRSKGTAEVVY 135
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 38.3 bits (85), Expect = 0.004
Identities = 15/51 (29%), Positives = 30/51 (58%)
Frame = +2
Query: 458 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 610
+FV G S +S+ ++ FSEFG + V++ ++ Q G+ ++ F S++
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKE 110
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 38.3 bits (85), Expect = 0.004
Identities = 15/51 (29%), Positives = 30/51 (58%)
Frame = +2
Query: 458 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 610
+FV G S +S+ ++ FSEFG + V++ ++ Q G+ ++ F S++
Sbjct: 79 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKE 129
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/77 (23%), Positives = 35/77 (45%)
Frame = +2
Query: 389 AAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKN 568
A+ + + P + +++G L + DD + N FS FG I+ ++ D+
Sbjct: 459 ASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTG 518
Query: 569 QRKGFCFITFESEQVVN 619
KG+ F+ + Q+ N
Sbjct: 519 LSKGYGFVKYADVQMAN 535
Score = 34.7 bits (76), Expect = 0.052
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +2
Query: 143 NAENGGGDSQDHNSA--EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKT 313
NA NG S + P ++ D+ L++G L D L + F ++GEI V
Sbjct: 454 NAGNGASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIK 513
Query: 314 DPNTGRSRGFAFIVF 358
D TG S+G+ F+ +
Sbjct: 514 DRVTGLSKGYGFVKY 528
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/77 (23%), Positives = 35/77 (45%)
Frame = +2
Query: 389 AAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKN 568
A+ + + P + +++G L + DD + N FS FG I+ ++ D+
Sbjct: 459 ASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTG 518
Query: 569 QRKGFCFITFESEQVVN 619
KG+ F+ + Q+ N
Sbjct: 519 LSKGYGFVKYADVQMAN 535
Score = 34.7 bits (76), Expect = 0.052
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +2
Query: 143 NAENGGGDSQDHNSA--EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKT 313
NA NG S + P ++ D+ L++G L D L + F ++GEI V
Sbjct: 454 NAGNGASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIK 513
Query: 314 DPNTGRSRGFAFIVF 358
D TG S+G+ F+ +
Sbjct: 514 DRVTGLSKGYGFVKY 528
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 37.5 bits (83), Expect = 0.007
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +2
Query: 212 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 379
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F+ D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPP---RPPGYAFVEFEDARDAD 59
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +2
Query: 140 GNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 292
G GGGD P R + ++ V GL + ++L+DH GE+
Sbjct: 98 GRGGRGGGDGGGRE--RGPSRRSEYRVVVSGLPSSASWQDLKDHMRKGGEV 146
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 37.5 bits (83), Expect = 0.007
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +2
Query: 212 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 379
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F+ D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPP---RPPGYAFVEFEDARDAD 59
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +2
Query: 140 GNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 292
G GGGD P R + ++ V GL + ++L+DH GE+
Sbjct: 98 GRGGRGGGDGGGRE--RGPSRRSEYRVVVSGLPSSASWQDLKDHMRKGGEV 146
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 37.5 bits (83), Expect = 0.007
Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 10/149 (6%)
Frame = +2
Query: 188 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 367
E P D + V LS T ++ F ++ S+ + + + G+ G+ F+ F +
Sbjct: 150 ETPPDFVDEVVIVSNLSPLTKIAHIKGFFNGVAQVVSVRLVVN-HEGKHVGYGFVEFASA 208
Query: 368 ESIDKVMAA--GEHTINNKKVDPK--------KAKARHGKIFVGGLSSEISDDEIRNFFS 517
+K + GE+ N+K + K + A +FV L I +I NFF
Sbjct: 209 YGANKALEEKNGEYLHNHKILLMKGHESPGFAEEAAITKTLFVANLRDSIQISDIINFFK 268
Query: 518 EFGTILEVEMPFDKTKNQRKGFCFITFES 604
+ G ++ V + ++ + G+ F+ F S
Sbjct: 269 DVGEVVHVRL-IVNSQGKHAGWGFVEFAS 296
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 37.1 bits (82), Expect = 0.010
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +2
Query: 209 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 379
+R ++VG L + E+ D F YG I I++K P R G+AF+ F+ P D
Sbjct: 6 NRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPP---RPPGYAFVEFEDPRDAD 59
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +2
Query: 167 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 292
S ++++ AP R D ++ V GL + ++L+DH G++
Sbjct: 94 SSSYSASRAPSRRSDYRVLVTGLPPSASWQDLKDHMRKAGDV 135
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 36.7 bits (81), Expect = 0.013
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +2
Query: 425 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK-GFCFITFE 601
+P++ + GKIFVG L + I E FF +FG I V + + ++ GF FI +
Sbjct: 156 NPQQEFRQEGKIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYA 215
Query: 602 SEQ 610
+E+
Sbjct: 216 AEK 218
Score = 33.9 bits (74), Expect = 0.090
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIES-INVKTDPNTGRSRGFAFIVFKAPESIDKVM 388
K+FVG L E + F +G IE+ I +K ++ GF FI++ A +S K +
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAV 224
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 36.3 bits (80), Expect = 0.017
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = +2
Query: 470 GLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 631
GLS+ +D +R F+ F +++ D+ + KGF FITFESE LK
Sbjct: 77 GLSAYTTDQSLRQLFAPFARLIK-----DQQTQRPKGFGFITFESEDDAQKALK 125
Score = 35.1 bits (77), Expect = 0.039
Identities = 22/65 (33%), Positives = 33/65 (50%)
Frame = +2
Query: 230 GLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI 409
GLS TTD+ LR F + + +K D T R +GF FI F++ + K + A I
Sbjct: 77 GLSAYTTDQSLRQLFAPFARL----IK-DQQTQRPKGFGFITFESEDDAQKALKALNGKI 131
Query: 410 NNKKV 424
N ++
Sbjct: 132 VNGRL 136
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 36.3 bits (80), Expect = 0.017
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +2
Query: 188 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 367
E P + LFV LS +T ++ D F GE+ SI + + + G+ G+ F+ F +
Sbjct: 236 ERPPNSVEEVLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVN-HEGKHVGYGFVEFASA 294
Query: 368 ESIDKVM 388
+ K +
Sbjct: 295 DETKKAL 301
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/70 (25%), Positives = 31/70 (44%)
Frame = +2
Query: 422 VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE 601
+ K+A R +FV L E I +FF + G ++ V++ K + G F+ F
Sbjct: 117 ISVKEAAVREKTLFVANLPYETKIPNIIDFFKKVGEVVRVQL-IVNLKGKLVGCGFVEFA 175
Query: 602 SEQVVNDLLK 631
S + L+
Sbjct: 176 SVNEAEEALQ 185
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +2
Query: 209 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 388
++ LFV L +ET + D F GE+ + + + G+ G F+ F + ++ +
Sbjct: 126 EKTLFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLK-GKLVGCGFVEFASVNEAEEAL 184
Query: 389 AA--GEHTINNK 418
GE NNK
Sbjct: 185 QKKNGECLDNNK 196
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +2
Query: 446 RHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 604
R +FV LS + I NFF + G ++ V + + T + G F+ F S
Sbjct: 357 RKKTLFVAHLSRKTEITHIINFFKDVGEVVHVRLILNHT-GKHVGCAFVEFGS 408
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 36.3 bits (80), Expect = 0.017
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +2
Query: 212 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 358
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEF 52
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +2
Query: 122 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 292
T NG GGG + + P R + ++ V GL + ++L+DH G++
Sbjct: 90 TRGSFNGGGR-GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDV 145
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 36.3 bits (80), Expect = 0.017
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +2
Query: 212 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 358
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEF 52
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +2
Query: 122 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 292
T NG GGG + + P R + ++ V GL + ++L+DH G++
Sbjct: 90 TRGSFNGGGR-GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDV 145
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 36.3 bits (80), Expect = 0.017
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +2
Query: 212 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 358
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEF 52
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +2
Query: 122 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 292
T NG GGG + + P R + ++ V GL + ++L+DH G++
Sbjct: 90 TRGSFNGGGR-GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDV 145
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 35.9 bits (79), Expect = 0.022
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +2
Query: 188 EAPGRDDDRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKA 364
E P LFV L++E K L++ F A G + S V N RS G+ F+ FK
Sbjct: 181 ETPSPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKT 240
Query: 365 PESIDKVM 388
+ + +
Sbjct: 241 KKQAEAAL 248
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 35.9 bits (79), Expect = 0.022
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +2
Query: 431 KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 604
KKA + V LS +++ ++ F FG ++ VE+ D+ N +G ++ F++
Sbjct: 91 KKAVQESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKA 148
Score = 34.7 bits (76), Expect = 0.052
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +2
Query: 218 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 397
L V LS + L++ FG +GE+ + + D RG ++ FKA +K
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEK----A 155
Query: 398 EHTINNKKVDPKKAKA 445
+ ++ ++D K KA
Sbjct: 156 QLYMDGAQIDGKVVKA 171
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 35.9 bits (79), Expect = 0.022
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +2
Query: 431 KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 604
KKA + V LS +++ ++ F FG ++ VE+ D+ N +G ++ F++
Sbjct: 91 KKAVQESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKA 148
Score = 34.7 bits (76), Expect = 0.052
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +2
Query: 218 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 397
L V LS + L++ FG +GE+ + + D RG ++ FKA +K
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEK----A 155
Query: 398 EHTINNKKVDPKKAKA 445
+ ++ ++D K KA
Sbjct: 156 QLYMDGAQIDGKVVKA 171
>At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing
protein contains Pfam profile:PF00076 RNA recognition
motif
Length = 602
Score = 35.5 bits (78), Expect = 0.030
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +2
Query: 479 SEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 628
S +D+++ N+F FG + +V +P+ Q++ F F+TF + V +L
Sbjct: 328 SSFTDEDVSNYFGNFGPVQDVRIPY----QQKRMFGFVTFLHSETVRIIL 373
Score = 32.7 bits (71), Expect = 0.21
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +2
Query: 248 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKK- 421
TD+++ ++FG +G ++ + + + R F F+ F E++ ++A G H I + +
Sbjct: 331 TDEDVSNYFGNFGPVQDVRIPYQ----QKRMFGFVTFLHSETVRIILARGNPHFICDSRV 386
Query: 422 -VDPKKAKAR 448
V P K K R
Sbjct: 387 LVKPYKEKGR 396
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 35.1 bits (77), Expect = 0.039
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 367
+++VG L T++EL D F A+G + S+ V P G+AF+ F+ P
Sbjct: 3 RVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRP-----PGYAFLDFEDP 48
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/59 (22%), Positives = 29/59 (49%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 631
+++VG L +++ E+ + F FG + V + + G+ F+ FE + D ++
Sbjct: 3 RVYVGNLDPRVTERELEDEFRAFGVVRSVWV-----ARRPPGYAFLDFEDPRDARDAIR 56
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 34.7 bits (76), Expect = 0.052
Identities = 14/49 (28%), Positives = 30/49 (61%)
Frame = +2
Query: 458 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 604
+++ L +++S++ + FS+FG ++ + D + + +GF FI FES
Sbjct: 19 LYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKD-FRGESRGFAFIEFES 66
Score = 33.1 bits (72), Expect = 0.16
Identities = 21/87 (24%), Positives = 43/87 (49%)
Frame = +2
Query: 164 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 343
+ +H S+ P + L++ L + +++ L F +G++ +V G SRGF
Sbjct: 3 NDDNHGSSSCPRKFTS--LYIANLDAQVSEEMLFLMFSDFGKVIR-SVLAKDFRGESRGF 59
Query: 344 AFIVFKAPESIDKVMAAGEHTINNKKV 424
AFI F++ +S + M + + +K+
Sbjct: 60 AFIEFESADSAGRAMLHMDGRLIGQKI 86
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 34.7 bits (76), Expect = 0.052
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Frame = +2
Query: 122 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETT-DKELRDHFGAYGEIES 298
T ++ G+ +GGG S+ +S+ P + LFV + T ++L HF YG+I +
Sbjct: 31 TKSERGGDKRSGGG-SRRSSSSMRPSKT----LFVINFDADNTRTRDLEKHFEPYGKIVN 85
Query: 299 INVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 406
+ ++ R FAFI ++A E + + A ++
Sbjct: 86 VRIR--------RNFAFIQYEAQEDATRALDASNNS 113
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 34.7 bits (76), Expect = 0.052
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Frame = +2
Query: 122 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETT-DKELRDHFGAYGEIES 298
T ++ G+ +GGG S+ +S+ P + LFV + T ++L HF YG+I +
Sbjct: 72 TKSERGGDKRSGGG-SRRSSSSMRPSKT----LFVINFDADNTRTRDLEKHFEPYGKIVN 126
Query: 299 INVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 406
+ ++ R FAFI ++A E + + A ++
Sbjct: 127 VRIR--------RNFAFIQYEAQEDATRALDASNNS 154
>At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 399
Score = 34.3 bits (75), Expect = 0.068
Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +2
Query: 251 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVD 427
++++ D+F +G ++ + + + R F F+ F PE++ ++A G H + + +V
Sbjct: 169 EEDVSDYFSTFGPVQDVRIPYQ----QKRMFGFVTFMYPETVKSILAKGNPHFVCHSRVL 224
Query: 428 PKKAKARHGKI 460
K K + GK+
Sbjct: 225 VKPYKEK-GKV 234
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 34.3 bits (75), Expect = 0.068
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +2
Query: 221 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE 400
F L + L +F ++GEI + V TG S G+A+I K E +K + G
Sbjct: 241 FDASLPVDDIKSALSKYFSSFGEITRVFVPPSHGTGGSLGYAYIDLK--EGAEKALELGR 298
Query: 401 HTI 409
H +
Sbjct: 299 HDV 301
>At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 130
Score = 33.9 bits (74), Expect = 0.090
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2
Query: 458 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 577
+FV G S +S+ ++ FSEFG + E F +KN RK
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQVTN-EHYFSGSKNHRK 98
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 33.9 bits (74), Expect = 0.090
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 284 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 391
G ++++ V TDP T +G AF+ F ES+ K +A
Sbjct: 469 GAVQNVIVVTDPVTRHPKGTAFVTFATKESVGKAVA 504
>At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 552
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +2
Query: 479 SEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 628
S D+++ +FS FGT+ +V +P+ Q++ F F++F + V +L
Sbjct: 269 STFKDEDVATYFSLFGTVQDVRIPY----QQKRMFGFVSFAHPETVKVVL 314
Score = 31.9 bits (69), Expect = 0.36
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +2
Query: 251 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVD 427
D+++ +F +G ++ + + + R F F+ F PE++ V+A G H I + +V
Sbjct: 273 DEDVATYFSLFGTVQDVRIPYQ----QKRMFGFVSFAHPETVKVVLARGNPHFICDSRVL 328
Query: 428 PKKAKARHGKI 460
K K + GK+
Sbjct: 329 VKPYKEK-GKV 338
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 33.1 bits (72), Expect = 0.16
Identities = 21/59 (35%), Positives = 30/59 (50%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 631
++ VGGL + D++ FS GT+ VE F +TK + F +I F S N L K
Sbjct: 11 RLHVGGLGESVGRDDLLKIFSPMGTVDAVE--FVRTKG--RSFAYIDF-SPSSTNSLTK 64
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 33.1 bits (72), Expect = 0.16
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +2
Query: 236 SWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 370
S T++ LRD F GEI + +K + G+SR FA+I F+ +
Sbjct: 11 SKHVTEERLRDVFSRKGEIADVKLKR-KSDGKSRQFAYIGFRTEQ 54
>At2g42240.1 68415.m05228 RNA recognition motif (RRM)-containing
protein similar to RNA-binding protein (Hermes) from
{Gallus gallus} SP|Q9W6I1, {Xenopus laevis} SP|Q9YGP5,
{Mus musculus} SP|Q9WVB0; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 124
Score = 33.1 bits (72), Expect = 0.16
Identities = 24/84 (28%), Positives = 40/84 (47%)
Frame = +2
Query: 200 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 379
RD+ R LFV GL + +E+ + F + E+ ++++ ++ FAF VF +S
Sbjct: 31 RDEVRTLFVAGLPEDVKPREIYNLFREFPGYETSHLRSSDG---AKPFAFAVFSDLQSAV 87
Query: 380 KVMAAGEHTINNKKVDPKKAKARH 451
VM H +N D +K H
Sbjct: 88 AVM----HALNGMVFDLEKHSTLH 107
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 32.7 bits (71), Expect = 0.21
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +2
Query: 200 RDDDR----KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 367
R DDR +L+VG LS T ++L F YG + +++K D +AF+ F P
Sbjct: 3 RYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD--------YAFVEFSDP 54
Query: 368 ESID 379
D
Sbjct: 55 RDAD 58
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFD 556
+++VG LSS ++ FS +G + +V+M D
Sbjct: 12 RLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD 45
>At5g16840.1 68418.m01973 RNA recognition motif (RRM)-containing
protein predicted proteins - Arabidopsis thaliana
Length = 259
Score = 32.3 bits (70), Expect = 0.28
Identities = 17/71 (23%), Positives = 39/71 (54%)
Frame = +2
Query: 212 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 391
R + VG LS T+ ++++ F GE+ESI+++++ ++ A++ FK + + +
Sbjct: 6 RSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSNEHS------AYVTFKETQGAETAVL 59
Query: 392 AGEHTINNKKV 424
+I ++ V
Sbjct: 60 LSGASIADQSV 70
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 32.3 bits (70), Expect = 0.28
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 361
+++VG L T++EL D F ++G I S+ V P G+AF+ F+
Sbjct: 3 RVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRP-----PGYAFLDFE 46
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 631
+++VG L +++ E+ + F FG I V + + G+ F+ FE + D ++
Sbjct: 3 RVYVGNLDPRVTERELEDEFRSFGVIRSVWV-----ARRPPGYAFLDFEDSRDARDAIR 56
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 32.3 bits (70), Expect = 0.28
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +2
Query: 458 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 610
+FV L+ D+++ FS FGT++ ++ D + FI FE+++
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKE 295
>At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM), PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 540
Score = 31.9 bits (69), Expect = 0.36
Identities = 16/71 (22%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +2
Query: 251 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVD 427
++++ ++F +G ++ + + + R F F+ F PE++ ++A G H + + +V
Sbjct: 272 EEDVSNYFSTFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKSILAKGNPHFVCDSRVL 327
Query: 428 PKKAKARHGKI 460
K K + GK+
Sbjct: 328 VKPYKEK-GKV 337
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 31.9 bits (69), Expect = 0.36
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +2
Query: 200 RDDDR----KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 367
R DDR +L+VG LS T ++L F YG + +++K D +AF+ F P
Sbjct: 3 RYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD--------YAFVEFGDP 54
Query: 368 ESID 379
D
Sbjct: 55 RDAD 58
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFD 556
+++VG LSS ++ FS +G + +V+M D
Sbjct: 12 RLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD 45
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 31.9 bits (69), Expect = 0.36
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF-KAPESIDKVMA 391
+++VG L T++EL D F A+G + ++ V P G+AF+ F +++D + A
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRP-----PGYAFLEFDDERDALDAISA 57
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/58 (22%), Positives = 29/58 (50%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 628
+++VG L +++ E+ + F FG + V + + G+ F+ F+ E+ D +
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWV-----ARRPPGYAFLEFDDERDALDAI 55
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 31.9 bits (69), Expect = 0.36
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +2
Query: 215 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF-KAPESIDKVMA 391
+++VG L T++EL D F A+G + ++ V P G+AF+ F +++D + A
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRP-----PGYAFLEFDDERDALDAISA 57
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/58 (22%), Positives = 29/58 (50%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 628
+++VG L +++ E+ + F FG + V + + G+ F+ F+ E+ D +
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWV-----ARRPPGYAFLEFDDERDALDAI 55
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 31.5 bits (68), Expect = 0.48
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +2
Query: 149 ENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETT-DKELRDHFGAYGEIESINVKTDPNT 325
+ GG + + G + LFV + T ++L HF YG+I ++ ++
Sbjct: 75 DRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIR----- 129
Query: 326 GRSRGFAFIVFKAPESIDKVMAA 394
R FAFI ++A E + + A
Sbjct: 130 ---RNFAFIQYEAQEDATRALDA 149
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 31.5 bits (68), Expect = 0.48
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +2
Query: 149 ENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETT-DKELRDHFGAYGEIESINVKTDPNT 325
+ GG + + G + LFV + T ++L HF YG+I ++ ++
Sbjct: 75 DRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIR----- 129
Query: 326 GRSRGFAFIVFKAPESIDKVMAA 394
R FAFI ++A E + + A
Sbjct: 130 ---RNFAFIQYEAQEDATRALDA 149
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 31.5 bits (68), Expect = 0.48
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 212 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 361
R +FVG +ET +L F YG ++ +++K+ G+AF+ F+
Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKS--------GYAFVYFE 43
Score = 27.9 bits (59), Expect = 5.9
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +2
Query: 158 GGDSQDHNSAEAPGRDDDRK-LFVGGLS-WETTDKELRDHFGAYGEIESINVKTDPNTGR 331
G + A+AP K LFV T + ++ HF YG++ ++ ++
Sbjct: 74 GERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRIR------- 126
Query: 332 SRGFAFIVFKAPESIDKVMAAGEHT 406
R F+F+ F+ E K + A + +
Sbjct: 127 -RNFSFVQFETQEDATKALEATQRS 150
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 31.5 bits (68), Expect = 0.48
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +2
Query: 458 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 598
+ V L + +++R F +FG + ++ +P D +GF F+ F
Sbjct: 38 LLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQF 84
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 31.1 bits (67), Expect = 0.64
Identities = 23/80 (28%), Positives = 38/80 (47%)
Frame = +2
Query: 218 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 397
L V L+ ++++L + FG YGEI+ I + PN R F+ F S D + A
Sbjct: 224 LVVFNLAPSVSNRDLENIFGVYGEIKEI--RETPN---KRHHKFVEFFDVRSADAALKA- 277
Query: 398 EHTINNKKVDPKKAKARHGK 457
+N ++ K+ K H +
Sbjct: 278 ---LNRTEIAGKRIKLEHSR 294
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 31.1 bits (67), Expect = 0.64
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 458 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 598
+ V L + +++R F +FG + ++ +P D +GF FI F
Sbjct: 39 LLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQF 85
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 31.1 bits (67), Expect = 0.64
Identities = 14/58 (24%), Positives = 28/58 (48%)
Frame = +2
Query: 458 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 631
++VG + ++ FS+FG + V+M + G+ F+ FE E+ D ++
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDM--------KSGYAFVYFEDERDAEDAIR 53
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +2
Query: 245 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 424
T ++++ HF YG++ ++ ++ R FAF+ F E K + + T N+K +
Sbjct: 107 TRERDMERHFEPYGKVLNVRMR--------RNFAFVQFATQEDATKAL---DSTHNSKLL 155
Query: 425 D 427
D
Sbjct: 156 D 156
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 30.7 bits (66), Expect = 0.84
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 212 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 361
R ++VG L + + E+ D F YG I I +K P R + F+ F+
Sbjct: 7 RSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPP---RPPCYCFVEFE 53
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 30.7 bits (66), Expect = 0.84
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +2
Query: 461 FVGGLSSEISDDEIRNFFSEFGTILEVEMPF 553
+VG L S+ +++++N FS+FG ++ + F
Sbjct: 11 YVGNLESDTEENDLKNAFSQFGDVIHSNVRF 41
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = +2
Query: 395 GEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQR 574
GE NN + + + + VG +SS + D E++ F +FG I + T +
Sbjct: 198 GERGGNNSVGELNRGEIPSRTLLVGNISSNVEDYELKVLFEQFGDIQALH-----TACKN 252
Query: 575 KGFCFITF 598
+GF +++
Sbjct: 253 RGFIMVSY 260
>At5g04210.1 68418.m00409 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 193
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +2
Query: 251 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 388
++++RDHF YGEIESI + P+ G AF+ + + +K M
Sbjct: 91 EQDIRDHFCPYGEIESIVI--FPHRGGGT-CAFLTYTTRLAAEKAM 133
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = +2
Query: 212 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 370
R L+VG L ++EL D F +GE+ES+ + GRS +AF+ F E
Sbjct: 23 RHLWVGNLPHGILERELADRFLRFGELESLAFQ----PGRS--YAFVNFNHDE 69
>At2g33440.1 68415.m04099 splicing factor family protein similar to
Splicing factor U2AF 65 kDa subunit (U2 snRNP auxiliary
factor large subunit) {Homo sapiens} SP|P26368, {Mus
musculus} SP|P26369; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 247
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +2
Query: 455 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGF 583
KIF+GG S IS + + S FG + + NQR F
Sbjct: 41 KIFIGGFSKAISSEMLMEIVSVFGPLKAYRFVSNNDLNQRCAF 83
>At1g67950.3 68414.m07762 RNA recognition motif (RRM)-containing
protein
Length = 279
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/80 (22%), Positives = 37/80 (46%)
Frame = +2
Query: 371 SIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMP 550
S+ + T +N +D + + + + +S +S +++ FFS G I VEM
Sbjct: 2 SVTAAFIDSDQTQHNILMDSQSTVSGVKTVKISNVSLIVSKKDVKEFFSFSGDIQYVEM- 60
Query: 551 FDKTKNQRKGFCFITFESEQ 610
+++ Q ++TF+ Q
Sbjct: 61 --RSETQESQVAYVTFKDSQ 78
>At1g67950.1 68414.m07761 RNA recognition motif (RRM)-containing
protein
Length = 278
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/80 (22%), Positives = 37/80 (46%)
Frame = +2
Query: 371 SIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMP 550
S+ + T +N +D + + + + +S +S +++ FFS G I VEM
Sbjct: 2 SVTAAFIDSDQTQHNILMDSQSTVSGVKTVKISNVSLIVSKKDVKEFFSFSGDIQYVEM- 60
Query: 551 FDKTKNQRKGFCFITFESEQ 610
+++ Q ++TF+ Q
Sbjct: 61 --RSETQESQVAYVTFKDSQ 78
>At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing
protein RNA-binding protein LAH1, Saccharomyces
cerevisiae, PIR2:B48600; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 433
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/53 (22%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +2
Query: 476 SSEISDDEIRNFFSEFGTILEVEMPFDKTKNQ-RKGFCFITFESEQVVNDLLK 631
S ++ +++ +FFS++G + V MP +++ G + F +E+ +++K
Sbjct: 124 SYDVKREDVESFFSQYGKVNSVRMPRHVAESRIFSGVALVEFPTEEDAQNVMK 176
>At4g16810.1 68417.m02538 expressed protein similar to vernalization
2 protein [Arabidopsis thaliana] GI:16945788, embryonic
flower 2 [Arabidopsis thaliana] GI:14276050,
fertilization-independent seed 2 protein [Arabidopsis
thaliana] GI:4185499
Length = 623
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +3
Query: 399 NTPSTTRK*TQRRLKHDMGRFLSEDSAVKSQM---MKSETSSVNLELS*KWRCPLTKQR 566
NT + + + LK G +E+ K ++ M ++ SSV E++ KWRCP +R
Sbjct: 547 NTEVLVKCSSSKELKTKAGEDNTEEREKKRRVLGEMSNQLSSVAKEIAGKWRCPQKNKR 605
>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
PF02854: MIF4G domain
Length = 1186
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +2
Query: 137 NGNAENGG--GDSQDHNSAEAPGRDDDR 214
+GN E G GD D++ + PG DDD+
Sbjct: 962 DGNHERGSESGDGDDYDDGDGPGSDDDK 989
>At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 204
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +2
Query: 176 HNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 337
+N A G D + LFV L++E+++ +++ F +YG I+ + G R
Sbjct: 127 NNDPNATG-DPYKTLFVSRLNYESSESKIKREFESYGPIKRVGYSEHSLAGSVR 179
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 95 NDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDR 214
NDN + +N N N NGGG ++ S P R+ DR
Sbjct: 119 NDNNGNNNNGNNNDNNNQNNGGG--SNNRSPPPPSRNSDR 156
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 92 NNDNFAQDITTDNQLNGNAENGGGDSQDHNS 184
NN N D +N N N +N G+++D+N+
Sbjct: 76 NNGNNNNDNNNNNNGNNNNDNNNGNNKDNNN 106
>At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 259
Score = 29.5 bits (63), Expect = 1.9
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Frame = +2
Query: 209 DRKLFVGGLSWETTDKELR----DHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 376
D LFV G E++ +HF + G++ I V +TG S G+AFI K
Sbjct: 116 DSALFVQGFDTSHPRHEIKTALWNHFSSCGKVYLIYVPIACSTGASVGYAFIDMK--NET 173
Query: 377 DKVMAAGEHTINNKKVD 427
+ G H + +K+D
Sbjct: 174 KGLTLNGSH-LGGRKID 189
>At1g67950.2 68414.m07760 RNA recognition motif (RRM)-containing
protein
Length = 279
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/71 (23%), Positives = 35/71 (49%)
Frame = +2
Query: 398 EHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 577
+ T +N +D + + + + +S +S +++ FFS G I VEM +++ Q
Sbjct: 12 DQTQHNILMDSQSTVSGVKTVKISNVSLIVSKKDVKEFFSFSGDIQYVEM---RSETQES 68
Query: 578 GFCFITFESEQ 610
++TF+ Q
Sbjct: 69 QVAYVTFKDSQ 79
>At2g47390.1 68415.m05915 expressed protein
Length = 961
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 137 NGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRD 268
+G AE+GGG S SA A +DD G + E+RD
Sbjct: 78 SGGAEDGGGTSNGSLSASATATEDDELAI--GTGYRLPPPEIRD 119
>At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 427
Score = 29.1 bits (62), Expect = 2.6
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = +2
Query: 416 KKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFC--F 589
KK D K + IFV L ++ F +FG I E + ++ C F
Sbjct: 268 KKNDQKVIEVPGTSIFVANLPLNAMPPQLFELFKDFGPIKENGIQVRSSRGNANPVCFGF 327
Query: 590 ITFESEQVVNDLLK 631
I+FE+ V +L+
Sbjct: 328 ISFETVASVQSVLQ 341
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 185 AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVK 310
A+ D+ ++++ L + T EL+D FG G++ I K
Sbjct: 271 ADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQVGRIKQK 312
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 185 AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVK 310
A+ D+ ++++ L + T EL+D FG G++ I K
Sbjct: 271 ADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQVGRIKQK 312
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 28.3 bits (60), Expect = 4.5
Identities = 10/40 (25%), Positives = 24/40 (60%)
Frame = +2
Query: 458 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 577
++VG LS ++ ++ + F FG I V++ + +T +++
Sbjct: 181 LYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKR 220
>At5g03480.1 68418.m00304 expressed protein ; expression supported
by MPSS
Length = 321
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 260 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 388
L HF + GEI + V TD G + AF+ + + DK +
Sbjct: 133 LEKHFDSCGEIRHVYVPTDYERGVLKSVAFLRIEGEGAEDKAL 175
>At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing
protein contains Pfam domain PF00076: RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 461
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 260 LRDHFGAYGEIESINVKTDPNTGRSRGF 343
L HF GEI + V +P+TG +GF
Sbjct: 364 LSKHFSVCGEITRVFVPRNPSTGAIKGF 391
>At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 422
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/66 (21%), Positives = 31/66 (46%)
Frame = +2
Query: 434 KAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQV 613
K +A+ IFV L + + +++ F FG I + + ++ F+ FE+ +
Sbjct: 269 KPQAQGSSIFVANLPMDATIEQLYETFKSFGAIRKDGIQVRSYPEKKNCIGFVAFENGEA 328
Query: 614 VNDLLK 631
V ++ +
Sbjct: 329 VKNVFQ 334
>At5g22830.1 68418.m02669 magnesium transporter CorA-like family
protein weak similarity to SP|Q01926 RNA splicing
protein MRS2, mitochondrial precursor {Saccharomyces
cerevisiae}; contains Pfam profile PF01544: CorA-like
Mg2+ transporter protein; supporting cDNA
gi|12007446|gb|AF322255.1|AF322255
Length = 459
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 89 ANNDNFAQDITTDNQ-LNGNAENGGGDSQDHNSAEAPGRDDDRKL 220
A + A+D D + LN + ++ G DS + GRDD +K+
Sbjct: 65 AKSPTTAEDFVGDYESLNVSDDDDGSDSNSSDGDNGGGRDDSKKI 109
>At4g24420.1 68417.m03501 RNA recognition motif (RRM)-containing
protein RRM, RNA recognition motif
Length = 87
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +2
Query: 260 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 424
L +HF + G I ++ + P T G A I ++ +KVM + +K+
Sbjct: 5 LTNHFKSCGVIAMVSFRRHPETDVVNGLATITMMGNDADEKVMLLNGSELGGRKL 59
>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
thaliana}
Length = 712
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +2
Query: 500 IRNFFSEFGTILE--VEMPFDKTKNQRKGFCFITFESEQ 610
++ +++ G I E + MP D G+CFI F + Q
Sbjct: 78 VKKIYNQLGVIKENGLWMPVDPDTKMTLGYCFIEFNTPQ 116
>At5g25780.1 68418.m03060 eukaryotic translation initiation factor 3
subunit 9, putative / eIF-3 eta, putative / eIF3b,
putative nearly identical to SP|Q9C5Z1 Eukaryotic
translation initiation factor 3 subunit 9 (eIF-3 eta)
(eIF3 p110) (eIF3b) {Arabidopsis thaliana}
Length = 714
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +2
Query: 500 IRNFFSEFGTILE--VEMPFDKTKNQRKGFCFITFESEQ 610
++ +++ G I E + MP D G+CFI F + Q
Sbjct: 79 VKKIYNQLGVIKENGLLMPVDPDTKMTLGYCFIEFNTPQ 117
>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
Length = 947
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/40 (25%), Positives = 25/40 (62%)
Frame = +2
Query: 458 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 577
++V LSS++ ++ + F FG I V++ + +T+ +++
Sbjct: 189 LYVVNLSSKVDENFLLRTFGRFGPIASVKIMWPRTEEEKR 228
>At4g17720.1 68417.m02646 RNA recognition motif (RRM)-containing
protein
Length = 313
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/67 (25%), Positives = 34/67 (50%)
Frame = +2
Query: 224 VGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH 403
V +S TD++L++ F G+I + ++T T R++ A++ FK + + +
Sbjct: 8 VSNVSLGATDRDLKEFFSFSGDI--LYLETQSETERTK-LAYVTFKDLQGAETAVLLSGA 64
Query: 404 TINNKKV 424
TI + V
Sbjct: 65 TIVDSSV 71
>At3g21215.1 68416.m02681 RNA-binding protein, putative contains RNA
recognition motif, Pfam:PF00076; contains AT-AC splice
sites at intron 8
Length = 339
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +2
Query: 458 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE 601
+F+G L I+++E+R+ S ++++ + +R CFI FE
Sbjct: 235 LFIGNLGENINEEELRSLLSAQPGFKQMKI----LRQERHTVCFIEFE 278
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +2
Query: 245 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 424
T ++++ HF YG++ ++ ++ R FAF+ F E K + + T N+K +
Sbjct: 81 TRERDMERHFEPYGKVLNVRMR--------RNFAFVQFATQEDATKAL---DSTHNSKLL 129
Query: 425 D 427
D
Sbjct: 130 D 130
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 27.5 bits (58), Expect = 7.8
Identities = 23/62 (37%), Positives = 28/62 (45%)
Frame = -2
Query: 297 LSISPYAPKXXXXXXXXXXXXSPPTKSFLSSSRPGASALL*SCESPPPFSAFPLSWLSVV 118
LS S +P +PP S LS S P +L S PPP S+ PLS LS
Sbjct: 27 LSPSSSSPSLSPSPPSSSPSSAPP--SSLSPSSPPPLSLSPSSPPPPPPSSSPLSSLSPS 84
Query: 117 IS 112
+S
Sbjct: 85 LS 86
>At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 428
Score = 27.5 bits (58), Expect = 7.8
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +2
Query: 458 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 631
IFV L + + +++ F FG I + + + + F F+TF S + V +L+
Sbjct: 279 IFVANLLMDATPEQLNETFKGFGAITKDGIQVRSYRLKGNCFGFVTFASAEAVKLVLQ 336
>At1g04950.2 68414.m00493 TATA box-binding protein-associated factor
(TAF) family protein contains Pfam profile: PF02969 TATA
box binding protein associated factor
Length = 549
Score = 27.5 bits (58), Expect = 7.8
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 404 TINNKKVDPKKAKARH-GKI-FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 577
T+ N +DPKKA +H G I + L + I + + ++LE E+ +K KNQ K
Sbjct: 310 TLVNALLDPKKALTQHYGAIQGLAALGHTVVRLLILSNLEPYLSLLEPELNAEKQKNQMK 369
>At1g04950.1 68414.m00492 TATA box-binding protein-associated factor
(TAF) family protein contains Pfam profile: PF02969 TATA
box binding protein associated factor
Length = 549
Score = 27.5 bits (58), Expect = 7.8
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 404 TINNKKVDPKKAKARH-GKI-FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 577
T+ N +DPKKA +H G I + L + I + + ++LE E+ +K KNQ K
Sbjct: 310 TLVNALLDPKKALTQHYGAIQGLAALGHTVVRLLILSNLEPYLSLLEPELNAEKQKNQMK 369
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,890,450
Number of Sequences: 28952
Number of extensions: 292831
Number of successful extensions: 1499
Number of sequences better than 10.0: 250
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1437
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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