Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19a22
         (669 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   4.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   5.2  
DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like pr...    22   5.2  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    21   9.1  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   9.1  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   9.1  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +3

Query: 378 TYLHCGHSCLCTD 416
           T +H GH C C +
Sbjct: 354 TTIHAGHKCTCPE 366


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 85   QPPRSTTCTTVALRRKRFEFWLA 153
            QPP   TCTT+  +  R   W++
Sbjct: 1102 QPPDKATCTTLTAQTIRVS-WVS 1123


>DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like
           protein protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +3

Query: 336 CMRCRRSFAVYPAVTYLHC 392
           C  CR SF     +T  HC
Sbjct: 81  CYCCRESFLRERTITLTHC 99


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 245 RKVNYTSVVAPHREHLAAV 189
           R+  Y S  AP REHLA++
Sbjct: 60  RQQRYLS--APEREHLASI 76


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 178 VESYSGGSERAKTRSACVLTRPSCM 104
           ++  SGG ++  + +A VLT P  M
Sbjct: 217 IKGISGGEKKRLSFAAEVLTNPKLM 241


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 178 VESYSGGSERAKTRSACVLTRPSCM 104
           ++  SGG ++  + +A VLT P  M
Sbjct: 217 IKGISGGEKKRLSFAAEVLTNPKLM 241


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,546
Number of Sequences: 336
Number of extensions: 3359
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)