Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19a22
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48285| Best HMM Match : Torsin (HMM E-Value=0)                      33   0.21 
SB_48253| Best HMM Match : zf-C3HC4 (HMM E-Value=0.12)                 32   0.49 
SB_25082| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.85 
SB_26290| Best HMM Match : zf-C2H2 (HMM E-Value=5.5e-08)               31   0.85 
SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)                   31   1.1  
SB_47201| Best HMM Match : SAM_1 (HMM E-Value=7.1e-09)                 29   2.6  
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_37232| Best HMM Match : EGF (HMM E-Value=1)                         29   3.4  
SB_59423| Best HMM Match : Insulin (HMM E-Value=7.7)                   29   4.5  
SB_5020| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.0  
SB_7289| Best HMM Match : EGF_CA (HMM E-Value=0)                       28   7.9  

>SB_48285| Best HMM Match : Torsin (HMM E-Value=0)
          Length = 636

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = +3

Query: 210 VRRYNRRVIDFAGIRNKTLEIIKTDRN-LPLNTECNVKAVDSACMRCRRSFAVYPAVTYL 386
           V++Y R   DF+   ++   + K  +   P    C+ K+    C+    +FA+     YL
Sbjct: 293 VKKYKRSSADFSEDEDQLQTVPKNPKQQTPQQVVCHKKSNRLLCVFMTVAFAIALGSVYL 352

Query: 387 HCGHSCLCTDCDETVNV 437
           H     LC D + T N+
Sbjct: 353 HLNPHGLCLDGEFTANL 369


>SB_48253| Best HMM Match : zf-C3HC4 (HMM E-Value=0.12)
          Length = 156

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 336 CMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCK 461
           C + R S      V   +CGHSC C+ C + VN    CP+C+
Sbjct: 28  CDQYRTSKMKLVPVVMPNCGHSC-CSTCAKRVN--RKCPECR 66


>SB_25082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 585

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 375 VTYLHCGHSCLCTDCDETVNVDNTCPKCKSGI 470
           V  L+CGH C C  C + +   + CP C+  I
Sbjct: 548 VVLLNCGHVCSCRTCAQQI---HQCPVCRGDI 576


>SB_26290| Best HMM Match : zf-C2H2 (HMM E-Value=5.5e-08)
          Length = 317

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 321 AVDSACMRCRRSFAVYPAVTYLHCG-HSCLCTDCDETVNVDN 443
           A  + C  C+  F+    + Y   G H C+C +C+ET + +N
Sbjct: 225 ATKNKCASCQTEFSRSKDLKYHEKGCHPCVCNECNETFDHEN 266


>SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)
          Length = 514

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 345 CRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGIR 473
           C+        + +L CGH   C  C E + +   CP C++ IR
Sbjct: 473 CKICMDAEVGIVFLPCGHLSCCPGCAEGMEL---CPMCRAPIR 512


>SB_47201| Best HMM Match : SAM_1 (HMM E-Value=7.1e-09)
          Length = 765

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/87 (25%), Positives = 39/87 (44%)
 Frame = +3

Query: 213 RRYNRRVIDFAGIRNKTLEIIKTDRNLPLNTECNVKAVDSACMRCRRSFAVYPAVTYLHC 392
           RR   +  D     N+  E I +    P + +   ++    C+ C+ +  V  A+  L C
Sbjct: 650 RRQTEKSYDIKLFVNEEEEPIYSPPETPPSQQ---RSTHGTCIVCQ-NLPVTRAL--LPC 703

Query: 393 GHSCLCTDCDETVNVDNTCPKCKSGIR 473
            H+C+C  C     +++ CP C+  IR
Sbjct: 704 RHACVCGSCFS--RLESKCPLCRQVIR 728


>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3235

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +1

Query: 25  VRTLFVETKNYQR--NFDSNLPQ-PPRSTTCTTVALRRKRFEFWLARYLRC 168
           VRT+  E  NY++  +FD N+P   P +       +++  F  W   +L+C
Sbjct: 338 VRTMASEPSNYRKSADFDFNMPDTDPTAADAEWKKIQQNTFTRWCNEHLKC 388


>SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 829

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 328 TVHACVAEEVSQFTPPLPICIADIRVCAPIATKR*TWTIRV 450
           +VH C A  V++FT  L +C+  +  CA +   R T  +R+
Sbjct: 411 SVHTCAALVVARFTLVLRLCL-PVHTCAALVFARFTLALRL 450


>SB_37232| Best HMM Match : EGF (HMM E-Value=1)
          Length = 79

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 390 CGHSCLCTDCDETVNVDNTCPKCKSGIRYKLK 485
           C +   C +  + VN   TCP C  G+R ++K
Sbjct: 3   CANGGTCNNGADNVNNTCTCPVCLKGVRCEMK 34


>SB_59423| Best HMM Match : Insulin (HMM E-Value=7.7)
          Length = 123

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 22/100 (22%), Positives = 41/100 (41%)
 Frame = +1

Query: 130 KRFEFWLARYLRCTTRPSIGTAARCSRCGATTDV*LTLRAFATKRWKSLRPTETCRSTQN 309
           +R+   +AR      + S+  A  C   GA  +  + LRA       SLR      + + 
Sbjct: 13  ERYAICIARVKSRPKKSSLHLAQTCGISGANVEYSICLRA------SSLREYSVSYTGRR 66

Query: 310 AM*RLSTVHACVAEEVSQFTPPLPICIADIRVCAPIATKR 429
              R       +   + +++P LP+  A + +CA  + +R
Sbjct: 67  ERYRPQVFLPMIIRRLLKYSPCLPLVFASVIICAYSSVRR 106


>SB_5020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/63 (31%), Positives = 24/63 (38%)
 Frame = +3

Query: 267 EIIKTDRNLPLNTECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNT 446
           E +  D     N  CN   + S   RC   F+          G    CTD DE V  D+T
Sbjct: 400 ECVTGDHTCDKNARCN-NTIGSYHCRCNPGFS----------GDGRECTDIDECVTGDHT 448

Query: 447 CPK 455
           C K
Sbjct: 449 CDK 451



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/63 (31%), Positives = 24/63 (38%)
 Frame = +3

Query: 267 EIIKTDRNLPLNTECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNT 446
           E +  D     N +CN       CM C   F+          G    CTD DE V  D+T
Sbjct: 277 ECVTGDHTCDKNAKCNNTIGSHHCM-CNPGFS----------GDGRECTDIDECVTGDHT 325

Query: 447 CPK 455
           C K
Sbjct: 326 CDK 328


>SB_7289| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 278

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/63 (31%), Positives = 24/63 (38%)
 Frame = +3

Query: 267 EIIKTDRNLPLNTECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNT 446
           E +  D     N  CN       CM C   F+          G+   CTD DE V  D+T
Sbjct: 176 ECVTGDHTCDKNARCNNTIGSYHCM-CNPGFS----------GNGRECTDIDECVTGDHT 224

Query: 447 CPK 455
           C K
Sbjct: 225 CDK 227



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/63 (31%), Positives = 24/63 (38%)
 Frame = +3

Query: 267 EIIKTDRNLPLNTECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNT 446
           E +  D     N  CN       CM C   F+          G+   CTD DE V  D+T
Sbjct: 217 ECVTGDHTCDKNARCNNTIGSYHCM-CNPGFS----------GNGRECTDIDECVTGDHT 265

Query: 447 CPK 455
           C K
Sbjct: 266 CDK 268


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,011,860
Number of Sequences: 59808
Number of extensions: 452505
Number of successful extensions: 1461
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1461
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)