Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19a21
(674 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 40 3e-04
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 32 0.087
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ... 31 0.15
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 31 0.20
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 29 0.46
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha... 29 0.61
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar... 28 1.4
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo... 27 1.9
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 27 3.3
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 27 3.3
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c... 27 3.3
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 27 3.3
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 26 4.3
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|... 26 4.3
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 26 4.3
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 26 5.7
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 5.7
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 26 5.7
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 25 7.6
SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual 25 10.0
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi... 25 10.0
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac... 25 10.0
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 25 10.0
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 39.9 bits (89), Expect = 3e-04
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +2
Query: 233 ECNVCKEISTDERFLKPKEC--CEYAICNACCVTMWKTATTHAKCPACRTSY 382
EC +C + + ER L K C C + +A C+ W ++ ++CP CR+S+
Sbjct: 1557 ECAICYSVLSVERTLPNKRCGTCRHKF-HASCLYKWFKSSNSSRCPLCRSSF 1607
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 31.9 bits (69), Expect = 0.087
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 230 YECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACR 373
Y+C +C + S + P C + CN C ++ T KCP CR
Sbjct: 204 YKCVICLD-SPENLSCTP---CGHIFCNFCILSALGTTAATQKCPVCR 247
>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 437
Score = 31.1 bits (67), Expect = 0.15
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +2
Query: 230 YECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCP 364
Y CNVC + T ++ EC ++ +C C + T H P
Sbjct: 6 YHCNVCAQDITRSIHIRCVECVDFDLCIPCFTSGASLGTHHPSHP 50
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 30.7 bits (66), Expect = 0.20
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 236 CNVC-KEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACRTSY 382
C +C +EI ++ KP +C Y +C C + + + +CPACR Y
Sbjct: 18 CPLCMEEIDISDKNFKPCQC-GYRVCRFCWHHIKEDL--NGRCPACRRLY 64
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 29.5 bits (63), Expect = 0.46
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +2
Query: 50 QLRDALKLIKNSFACCFKNINSMQMYVNELISNCLLFIEKLETINKTVKVMN 205
QL+ + +K++F+ N S+ + E + C LF+EKL TI KT N
Sbjct: 523 QLQATYENLKSNFSARIFNQLSVHSFFAE--ATCHLFLEKLPTITKTYVYSN 572
>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 496
Score = 29.1 bits (62), Expect = 0.61
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +1
Query: 460 LTSYFDLKDNEHVPSEPM--AFIRNYLNCTFDLLDDAVLM 573
++++ DL DN H+P + M I LN TFD D LM
Sbjct: 332 ISNFLDLNDNFHLPLQIMDPRKIAQELNLTFDGFQDYCLM 371
>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 232
Score = 27.9 bits (59), Expect = 1.4
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Frame = +2
Query: 221 SVLYECNVCKEI-----STDERFLKPKECCEYAICNAC--CVTMWKTAT 346
S LYECN C+EI D + CC++ C C T W AT
Sbjct: 179 SNLYECNACREIVIAGYVCDCGYCLHVYCCKHLAHVNCINCNTPWANAT 227
>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -3
Query: 159 NNRQFDINSFTYICIEFIFLKQHAKEFLISFNASRNC 49
N+R+ + F IC+ IF +++ I AS NC
Sbjct: 205 NSREIVLTDFGSICLVPIFASNNSEAIAIQDKASENC 241
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 26.6 bits (56), Expect = 3.3
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = +3
Query: 282 QKNVANTLYATRAALPCGKRPPRTQSVQ 365
QKN+ + L++ + LPC + R ++++
Sbjct: 338 QKNIVDDLFSVKKPLPCSPKSKRVKTLE 365
>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +2
Query: 230 YECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACRTSYK 385
Y+ +C +S D + +P C I + C+ + T + +CP C T+Y+
Sbjct: 21 YDKKLCS-LSNDS-WRRPCRCS--LIAHESCLISYITRSGSTRCPQCLTAYR 68
>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
2|||Manual
Length = 466
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +1
Query: 502 SEPMAFIRNYLNCTFDLLDDAVLMNYFNYLQSMQLKHLVGSTSTNIFK 645
SEPMAF+ +N + LL ++++ N ++ L+ L+ T T + K
Sbjct: 127 SEPMAFMSENVNLQYALL-NSIIDKMNNNIKKPNLEFLMPCTITKLSK 173
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3
Query: 276 KNLSSVDISLQTLHSYKTELSTNKFITLT 190
KNLS++ L+T +S+ ELS + ITL+
Sbjct: 303 KNLSTIQSPLKTSNSFFKELSPHSQITLS 331
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 26.2 bits (55), Expect = 4.3
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +1
Query: 484 DNEHVPSEPMAFIRNYLNCTFDLLDDAVLMNYFNYLQSMQLKHLVGSTSTNIFKFVK 654
DN+ P E AF+R+ L D DD L + LQ +L L+ T + F K
Sbjct: 1342 DNKSTPEEREAFLRSLLEHDGD--DDHDLT--YGELQDDELNELISRTDEELVLFKK 1394
>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 381
Score = 26.2 bits (55), Expect = 4.3
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 35 YPYLKQLRDALKLIKNSFACCFKNINSM-QMYVNELISNCLLFIEKLETINKTV 193
Y Y KQ+R+ L + + + F+NI + + LI + L I +L +NK V
Sbjct: 170 YTYPKQVRECLNVYQVLISKGFRNITVLGESAGGTLILSFLYQISELSKLNKVV 223
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 397 VACLFIRCPARWTLCVRGGRFPHGNAARVA 308
V C IR P+ + LC G+ H +A ++A
Sbjct: 337 VPCQLIRLPSDFVLCKMKGKKEHKDAFKIA 366
>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 707
Score = 25.8 bits (54), Expect = 5.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 268 KIFKAKRMLRIRYMQRVLRYHV 333
K+F +L I+Y+ +VL YHV
Sbjct: 227 KVFNDLLLLAIQYVPKVLNYHV 248
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/55 (21%), Positives = 26/55 (47%)
Frame = +2
Query: 197 VMNLFVDNSVLYECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKC 361
++ F +NS + N+C+ S +F+ E+ +C C ++ + A + C
Sbjct: 3258 ILKPFFENSKFTKQNLCESASIIVQFITDLTVGEFQLCLKCLLSFSQHAASLRIC 3312
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +2
Query: 143 SNCLLFIEKLETINKTVKVMNLFVDNSVLYECNVCKEISTDERFLK 280
S LF ++ + ++M +++CNV E+ D+RFL+
Sbjct: 837 SGLKLFKLGIKLCTRNEQIMKTIWSFIHVHDCNVISEVIPDQRFLR 882
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 25.4 bits (53), Expect = 7.6
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +2
Query: 107 INSMQMYVNELISNCLLFIE-KLETINKTVKV---MNLFVDNSVLYECNVCKEISTDERF 274
+NS ++ L ++ + + +L ++N V+ M+L VD VLY+ V E R+
Sbjct: 503 LNSRSTHLPPLFASLMQHLSCRLNSLNNLVRYIRSMSLDVDRQVLYKLRVMGEKCNSVRY 562
Query: 275 L 277
L
Sbjct: 563 L 563
>SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 25.0 bits (52), Expect = 10.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -2
Query: 265 IRRYFFTNIAFVQNRIVYEQIHNFNSFINSF 173
I R+ F+N+ F++NR+ + INS+
Sbjct: 227 IDRFTFSNLEFLENRVDSKSKLTMQDLINSY 257
>SPAC1002.16c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 25.0 bits (52), Expect = 10.0
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = -3
Query: 450 FKMISFQSQQVAAATHFALRA---YLYDVLH-AGHFACVVAVFHMVTQHALHIAYSQHSF 283
+K + S Q+A A + A Y Y + AGH ++A+F H ++I + +H
Sbjct: 409 YKRATAISLQLAIANSSGILAGQIYRYPPKYIAGHLTSLIAIFISTVLHVVNIFFLKHQN 468
Query: 282 GFKNLS 265
K S
Sbjct: 469 SKKQKS 474
>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 25.0 bits (52), Expect = 10.0
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = +2
Query: 128 VNELISNCLLFIEKLETINKTVKVMNLFVDNSVLYECNVCKEISTDERFLKPK 286
++ L+ +C+ + K + K V+ + DN Y V EI D+ K +
Sbjct: 282 IDPLVVDCMCVLWKKSSSKKVVRRLQQRDDNDEKYVYKVLSEILRDDMLKKQR 334
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 25.0 bits (52), Expect = 10.0
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Frame = +2
Query: 230 YECNVCKEISTDERFLKPKECCEYAICNACCVTMW-------KTATTHAKCPACR 373
+ C+VC + F+ P C + C C + T+T AKCP CR
Sbjct: 604 FNCSVCLDPCLAPVFIIP---CGHFTCQECMSMLVGQKYGSSSTSTIIAKCPMCR 655
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,750,936
Number of Sequences: 5004
Number of extensions: 57438
Number of successful extensions: 215
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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