Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19a21
(674 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g28530.1 68415.m03466 RNA recognition motif (RRM)-containing ... 37 0.011
At2g37580.1 68415.m04610 zinc finger (C3HC4-type RING finger) fa... 37 0.014
At1g74870.1 68414.m08677 expressed protein contains similarity t... 36 0.025
At5g05530.1 68418.m00600 zinc finger (C3HC4-type RING finger) fa... 36 0.033
At1g04360.1 68414.m00426 zinc finger (C3HC4-type RING finger) fa... 36 0.033
At4g17245.1 68417.m02593 zinc finger (C3HC4-type RING finger) fa... 35 0.057
At2g38920.1 68415.m04784 SPX (SYG1/Pho81/XPR1) domain-containing... 35 0.057
At3g45630.1 68416.m04928 RNA recognition motif (RRM)-containing ... 34 0.100
At4g10370.1 68417.m01702 DC1 domain-containing protein contains ... 32 0.40
At3g05670.1 68416.m00631 PHD finger family protein contains Pfam... 32 0.40
At1g71980.1 68414.m08320 protease-associated zinc finger (C3HC4-... 32 0.40
At4g33565.1 68417.m04770 zinc finger (C3HC4-type RING finger) fa... 31 0.53
At4g30400.1 68417.m04318 zinc finger (C3HC4-type RING finger) fa... 31 0.53
At2g42350.1 68415.m05241 zinc finger (C3HC4-type RING finger) fa... 31 0.53
At1g72200.1 68414.m08348 zinc finger (C3HC4-type RING finger) fa... 31 0.53
At5g02340.1 68418.m00157 DC1 domain-containing protein contains ... 31 0.70
At4g13130.1 68417.m02045 DC1 domain-containing protein contains ... 31 0.70
At2g44950.1 68415.m05596 zinc finger (C3HC4-type RING finger) fa... 31 0.70
At2g42360.1 68415.m05242 zinc finger (C3HC4-type RING finger) fa... 31 0.70
At2g13950.1 68415.m01550 DC1 domain-containing protein contains ... 31 0.70
At5g27420.1 68418.m03273 zinc finger (C3HC4-type RING finger) fa... 31 0.93
At5g47610.1 68418.m05876 zinc finger (C3HC4-type RING finger) fa... 30 1.2
At5g09870.1 68418.m01141 cellulose synthase, catalytic subunit, ... 30 1.2
At4g10160.1 68417.m01662 zinc finger (C3HC4-type RING finger) fa... 30 1.2
At4g10150.1 68417.m01660 zinc finger (C3HC4-type RING finger) fa... 30 1.2
At3g25940.1 68416.m03233 transcription factor S-II (TFIIS) domai... 30 1.2
At2g39100.1 68415.m04804 zinc finger (C3HC4-type RING finger) fa... 30 1.2
At1g53340.1 68414.m06046 DC1 domain-containing protein contains ... 30 1.2
At1g21650.1 68414.m02710 preprotein translocase secA family prot... 30 1.2
At1g13100.1 68414.m01519 cytochrome P450 71B29, putative (CYP71B... 30 1.2
At5g05170.1 68418.m00550 cellulose synthase, catalytic subunit (... 30 1.6
At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc f... 30 1.6
At2g17620.1 68415.m02038 cyclin, putative (CYC2a) similar to cyc... 30 1.6
At5g02750.1 68418.m00217 zinc finger (C3HC4-type RING finger) fa... 29 2.1
At5g17960.1 68418.m02106 DC1 domain-containing protein contains ... 29 2.8
At1g51890.1 68414.m05849 leucine-rich repeat protein kinase, put... 29 2.8
At1g49230.1 68414.m05519 zinc finger (C3HC4-type RING finger) fa... 29 2.8
At5g44770.1 68418.m05487 DC1 domain-containing protein contains ... 29 3.8
At3g01510.1 68416.m00077 5'-AMP-activated protein kinase beta-1 ... 29 3.8
At1g44050.1 68414.m05082 DC1 domain-containing protein contains ... 29 3.8
At1g17145.1 68414.m02090 expressed protein 29 3.8
At5g41400.1 68418.m05030 zinc finger (C3HC4-type RING finger) fa... 28 5.0
At5g25180.1 68418.m02985 cytochrome P450 71B14, putative (CYP71B... 28 5.0
At2g13900.1 68415.m01542 DC1 domain-containing protein contains ... 28 5.0
At5g38070.1 68418.m04587 zinc finger (C3HC4-type RING finger) fa... 28 6.6
At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger) fa... 28 6.6
At5g37910.1 68418.m04567 seven in absentia (SINA) family protein... 27 8.7
At3g26250.1 68416.m03275 DC1 domain-containing protein contains ... 27 8.7
At1g47570.1 68414.m05281 zinc finger (C3HC4-type RING finger) fa... 27 8.7
At1g33480.1 68414.m04144 zinc finger (C3HC4-type RING finger) fa... 27 8.7
At1g18740.1 68414.m02337 expressed protein 27 8.7
>At2g28530.1 68415.m03466 RNA recognition motif (RRM)-containing
protein similar to SP|P34909 General negative regulator
of transcription subunit 4 {Saccharomyces cerevisiae};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 236
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +2
Query: 236 CNVC-KEISTDERFLKPKECCEYAICNAC---CVTMWKTATTHAKCPACRTSY 382
C +C +E+ ++ LKP +C Y IC C + M + T +CPACRT Y
Sbjct: 9 CPLCTEEMDLTDQHLKPCKC-GYQICVWCWHHIIEMAEKDKTEGRCPACRTRY 60
>At2g37580.1 68415.m04610 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 235
Score = 36.7 bits (81), Expect = 0.014
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 233 ECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACRT 376
EC+VC + TD L+ C++A + C+ W H CP CRT
Sbjct: 141 ECSVCLMVFTDSDELRQLSECKHAF-HVLCIETW--LKDHPNCPICRT 185
>At1g74870.1 68414.m08677 expressed protein contains similarity to
hypothetical proteins
Length = 289
Score = 35.9 bits (79), Expect = 0.025
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 233 ECNVCKEISTDERFLKPKEC-CEYAICNACCVTMWKTATTHAKCPACRTSYK 385
EC +C E+ D L+ + C C + IC C K + A+CPACR YK
Sbjct: 211 ECPICSELM-DATDLEFEPCTCGFRICLFCHN---KISENEARCPACRKDYK 258
>At5g05530.1 68418.m00600 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 199
Score = 35.5 bits (78), Expect = 0.033
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 233 ECNVC-KEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACR 373
EC +C +E+ DE ++ +CC + + C +W+ T + CP CR
Sbjct: 147 ECTICLEELCHDEESIETHDCCH--VFHKLC--LWRWIRTKSSCPLCR 190
>At1g04360.1 68414.m00426 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 381
Score = 35.5 bits (78), Expect = 0.033
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 233 ECNVC-KEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACRTS 379
EC+VC E DE+ CC + + C+ +W +A CP CRTS
Sbjct: 133 ECSVCLNEFQEDEKLRIIPNCCH--VFHIDCIDIWLQG--NANCPLCRTS 178
>At4g17245.1 68417.m02593 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 166
Score = 34.7 bits (76), Expect = 0.057
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 233 ECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACRTS 379
EC +C D L+ E C++ + C+ W +++H+ CP CRT+
Sbjct: 101 ECIICLSEFQDGDTLRVLERCKHGF-HVYCIQKW-LSSSHSSCPTCRTN 147
>At2g38920.1 68415.m04784 SPX (SYG1/Pho81/XPR1) domain-containing
protein / zinc finger (C3HC4-type RING finger)
protein-related weak similarity to tripartite motif
protein TRIM13 [Mus musculus] GI:12407427; contains Pfam
profile PF03105: SPX domain, weak hit to PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 335
Score = 34.7 bits (76), Expect = 0.057
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Frame = +2
Query: 173 ETINKTVKVMNLFVDNSVLYE----CNVCKEISTDERFLKPKECCEYAICNACCVTM--- 331
E +N+ V+ L + NS+ E C +C E + LK C + CN+C +
Sbjct: 206 ENLNEDQPVLKLMLPNSIELEYDLTCAICLETVFNPYALK----CGHIFCNSCACSAASV 261
Query: 332 -----WKTATTHAKCPACR 373
K A H+KCP CR
Sbjct: 262 LIFQGIKAAPRHSKCPICR 280
>At3g45630.1 68416.m04928 RNA recognition motif (RRM)-containing
protein similar to SP|P34909 General negative regulator
of transcription subunit 4 {Saccharomyces cerevisiae};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 989
Score = 33.9 bits (74), Expect = 0.100
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +2
Query: 236 CNVC-KEISTDERFLKPKECCEYAICNAC---CVTMWKTATTHAKCPACRTSY 382
C +C +E+ ++ LKP +C Y IC C + M + + +CPACRT Y
Sbjct: 9 CPLCAEEMDLTDQQLKPCKC-GYQICVWCWHHIMDMAEKDQSEGRCPACRTPY 60
>At4g10370.1 68417.m01702 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 687
Score = 31.9 bits (69), Expect = 0.40
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = +2
Query: 191 VKVMNLFVDNSVLYECNVCK---EISTDERFLK-PKECCEYAICNACCVTM 331
+K+ N N Y C +C+ E T+ F PK+ + CNACC T+
Sbjct: 540 LKICNGKEANDQSYWCEICEGKIEEGTERAFYNTPKKDTSFYKCNACCTTL 590
>At3g05670.1 68416.m00631 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 883
Score = 31.9 bits (69), Expect = 0.40
Identities = 23/113 (20%), Positives = 46/113 (40%)
Frame = +2
Query: 47 KQLRDALKLIKNSFACCFKNINSMQMYVNELISNCLLFIEKLETINKTVKVMNLFVDNSV 226
+Q+R+A L+K+S +N ++ L + K + K K + L + +
Sbjct: 358 EQIREAGSLLKSS-------VNHASSIRQTTVNKDLPQLRK-SPVKKGEKKVELVKRDVI 409
Query: 227 LYECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACRTSYK 385
C +C R +CC + C C+ W + ++CP C+ ++
Sbjct: 410 KNVCGICLSEEDMRRLKGTLDCCSHYFC-FTCIMEW--SKVESRCPLCKQRFR 459
>At1g71980.1 68414.m08320 protease-associated zinc finger
(C3HC4-type RING finger) family protein identical to
ReMembR-H2 protein JR702 [Arabidopsis thaliana]
gi|6942149|gb|AAF32326; contains Pfam domain, PF02225:
protease-associated (PA) domain and Pfam domain,
PF00097: Zinc finger, C3HC4 type (RING finger);
identical to cDNA ReMembR-H2 protein JR702 mRNA, partial
cds GI:6942148
Length = 448
Score = 31.9 bits (69), Expect = 0.40
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +2
Query: 215 DNSVLYECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACR 373
DN+ + C +C E T L+ CC +A CV W T + CP C+
Sbjct: 225 DNTTAFTCAICLEDYTVGDKLRLLPCCHK--FHAACVDSWLT-SWRTFCPVCK 274
>At4g33565.1 68417.m04770 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 204
Score = 31.5 bits (68), Expect = 0.53
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +2
Query: 176 TINKTVKVMNLFVDNSVLY--ECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATT 349
T+ ++KV + V+ +C+VC +E L+ C++A + C+ W +
Sbjct: 32 TVISSIKVCQYSKKDGVVEGTDCSVCLSEFEEEETLRLLPKCKHAF-HLYCIDTW--LRS 88
Query: 350 HAKCPACR 373
H CP CR
Sbjct: 89 HTNCPLCR 96
>At4g30400.1 68417.m04318 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHX1a
[Arabidopsis thaliana] GI:3790591; contains Pfam profile
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 472
Score = 31.5 bits (68), Expect = 0.53
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +2
Query: 230 YECNVCK-EISTDERF-LKPKECCEYAICNACCVTMWKTATTHAKCPACRTS 379
++C VC E T+++ L PK C +A + C+ W +H+ CP CR+S
Sbjct: 132 FDCAVCLCEFETEDKLRLLPK--CSHAF-HMDCIDTW--LLSHSTCPLCRSS 178
>At2g42350.1 68415.m05241 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 217
Score = 31.5 bits (68), Expect = 0.53
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 233 ECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACRT 376
EC VC + ++ + C++ + + CV W TT + CP CRT
Sbjct: 99 ECAVCLSLLEEKDNARMLPNCKH-VFHVSCVDTW--LTTQSTCPVCRT 143
>At1g72200.1 68414.m08348 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 404
Score = 31.5 bits (68), Expect = 0.53
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +2
Query: 233 ECNVCK-EISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACR 373
EC+VC E DE +CC + + C+ W +H CP CR
Sbjct: 143 ECSVCLNEFEDDETLRLIPKCCH--VFHPGCIDAW--LRSHTTCPLCR 186
>At5g02340.1 68418.m00157 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 631
Score = 31.1 bits (67), Expect = 0.70
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = +2
Query: 236 CNVCKEISTDERFLKPKEC--CEYAICNACCVTMWKTATTHAK 358
C +C+E +++ C C+Y IC C +K H K
Sbjct: 478 CQICQEDGDGNNYIRKLNCMECKYIICFRCATLPYKAKYKHDK 520
>At4g13130.1 68417.m02045 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 767
Score = 31.1 bits (67), Expect = 0.70
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +2
Query: 218 NSVLYECNVC-KEISTDERFLKPKECCEYAICNACCVTM 331
++++Y C C KEI+++ERF K C EY CCVT+
Sbjct: 648 STMMYWCEACEKEINSEERFYK---CDEY-----CCVTL 678
>At2g44950.1 68415.m05596 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 878
Score = 31.1 bits (67), Expect = 0.70
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 11/84 (13%)
Frame = +2
Query: 164 EKLETINKTVKVMNLFVDNSVLYECNVCKEISTDERFLKPKEC-----------CEYAIC 310
E++E K V + ++ S + + +E+S + LK K C C + C
Sbjct: 788 EEMEIAKKKVSRLRSLIEGSSAIQ-KLRQELSEFKEILKCKACNDRPKEVVITKCYHLFC 846
Query: 311 NACCVTMWKTATTHAKCPACRTSY 382
N C + T T KCP C S+
Sbjct: 847 NPCVQKL--TGTRQKKCPTCSASF 868
>At2g42360.1 68415.m05242 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 236
Score = 31.1 bits (67), Expect = 0.70
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 233 ECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACRT 376
EC VC + ++ + C++ I + CV W TT + CP CRT
Sbjct: 107 ECAVCLSVLKEQDKARELPNCKH-IFHVDCVDTW--LTTCSTCPVCRT 151
>At2g13950.1 68415.m01550 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 517
Score = 31.1 bits (67), Expect = 0.70
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = +2
Query: 236 CNVCKEISTDERFLKPKEC--CEYAICNACCVTMWKTATTHAK 358
C +C+E +++ C C+Y IC C +K H K
Sbjct: 400 CQICQEDGDGNNYIRKLNCMECKYIICFRCATLPYKAKYKHDK 442
>At5g27420.1 68418.m03273 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 zinc finger protein
ATL6 [Arabidopsis thaliana]
gi|4928403|gb|AAD33584.1|AF132016_1[4928403]; contains
Pfam domain, PF00097: Zinc finger, C3HC4 type (RING
finger)
Length = 368
Score = 30.7 bits (66), Expect = 0.93
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +2
Query: 233 ECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACRTS 379
EC +C D+ L+ C++ + + C+ W H CP CRT+
Sbjct: 123 ECAICLNEFEDDETLRLLPKCDH-VFHPHCIGAWLQG--HVTCPVCRTN 168
>At5g47610.1 68418.m05876 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 166
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +2
Query: 233 ECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACRTS 379
EC +C ++ E C++ + C+ W +T + CP CRTS
Sbjct: 106 ECAICLSEFEQGESIQVLEKCQHGF-HVKCIHKW--LSTRSSCPTCRTS 151
>At5g09870.1 68418.m01141 cellulose synthase, catalytic subunit,
putative similar to gi:2827141 cellulose synthase
catalytic subunit (Ath-A), Arabidopsis thaliana
Length = 1069
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = +2
Query: 236 CNVCK---EISTD-ERFLKPKECCEYAICNACCVTMWKTATTHAKCPACRTSYK 385
C +C E+S D E F+ EC + +C C ++ + CP C+T YK
Sbjct: 39 CQICGDEIELSVDGESFVACNECA-FPVCRPCYE--YERREGNQSCPQCKTRYK 89
>At4g10160.1 68417.m01662 zinc finger (C3HC4-type RING finger)
family protein zinc finger protein, Arabidopsis
thaliana, gb:L76926
Length = 225
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 233 ECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACRTS 379
+C+VC E L+ C + + C+ +W T+H CP CR S
Sbjct: 96 QCSVCLGDYQAEEKLQQMPSCGHTF-HMECIDLW--LTSHTTCPLCRLS 141
>At4g10150.1 68417.m01660 zinc finger (C3HC4-type RING finger)
family protein RING-H2 finger protein RHA1a, Arabidopsis
thaliana,AF078683
Length = 236
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 233 ECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACRTS 379
+C+VC E L+ C + + C+ +W T+H CP CR S
Sbjct: 110 QCSVCLGDYQAEEKLQQMPSCGHTF-HMECIDLW--LTSHTTCPLCRLS 155
>At3g25940.1 68416.m03233 transcription factor S-II (TFIIS)
domain-containing protein similar to SP|O94703
DNA-directed RNA polymerase I 13.1 kDa polypeptide (EC
2.7.7.6) {Schizosaccharomyces pombe}; contains Pfam
profile PF01096: Transcription factor S-II (TFIIS)
Length = 119
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 296 EYAICNACCVTMWKTATTHAKCPACRTS 379
E+ CN C + +T +A+CP C+T+
Sbjct: 8 EFLFCNLCGTMLVLKSTKYAECPHCKTT 35
>At2g39100.1 68415.m04804 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 296
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +2
Query: 236 CNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACRTSY 382
C +C E T+ R C++ C A C+ W ++ CP C T +
Sbjct: 39 CPICLENLTERRSAAVITVCKHGYCLA-CIRKW--SSFKRNCPLCNTRF 84
>At1g53340.1 68414.m06046 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 667
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +2
Query: 236 CNVCKEISTDERF-LKPKEC--CEYAICNACCVTMWKTATTHAK 358
C++C+E S DE F K C C++ IC C +K H K
Sbjct: 502 CHICQE-SKDESFSCKKLNCIECDFVICFKCATLPYKARYQHDK 544
>At1g21650.1 68414.m02710 preprotein translocase secA family protein
contains Pfam profiles: PF01043 SecA protein, amino
terminal region, PF00400 WD domain, G-beta repeat,
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 1579
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/51 (27%), Positives = 19/51 (37%)
Frame = +2
Query: 233 ECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACRTSYK 385
EC VC + E + C + C C + K +CPAC K
Sbjct: 5 ECPVCLQSYDGESTVPRVLACGHTACEECLTNLPKKFPDTIRCPACTVLVK 55
>At1g13100.1 68414.m01519 cytochrome P450 71B29, putative (CYP71B29)
strong similarity to gb|X97864 cytochrome P450 and
identical to Cytochrome P450 71B29
(SP:Q9SAE4)[Arabidopsis thaliana];PF|00067 Cytochrome
P450 family
Length = 490
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 304 YMQRVLRYHVENGHHARKVSSVQDIV*ISTQRKMSGGGNLLTLERDHFK 450
+ Q +L YH++ G S + D+V I+ +K G+ L DH K
Sbjct: 244 FFQNILDYHLKPGRKVADSSDIIDVV-INMIKKQEKDGDSFKLTTDHLK 291
>At5g05170.1 68418.m00550 cellulose synthase, catalytic subunit
(Ath-B) nearly identical to gi:2827143, cellulose
synthase, catalytic subunit (Ath-B)
Length = 1065
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/71 (28%), Positives = 32/71 (45%)
Frame = +2
Query: 173 ETINKTVKVMNLFVDNSVLYECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTH 352
ET K +K N+ + NV K + D RF+ + C + +C C ++ +
Sbjct: 6 ETAGKPMK--NIVPQTCQICSDNVGKTVDGD-RFVAC-DICSFPVCRPCYE--YERKDGN 59
Query: 353 AKCPACRTSYK 385
CP C+T YK
Sbjct: 60 QSCPQCKTRYK 70
>At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc
finger (C3HC4-type RING finger) family protein (BRCA1)
contains Pfam profiles PF00533: BRCA1 C Terminus (BRCT)
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01535: PPR repeat; identical to cDNA BRCA1 GI:28372473
Length = 1276
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 293 CEYAICNACCVTMWKTATTHAKCPACRTSY 382
C + CNAC V K+ A CP C+ Y
Sbjct: 366 CNHVFCNACIV---KSMKMDATCPVCKIPY 392
>At2g17620.1 68415.m02038 cyclin, putative (CYC2a) similar to cyclin
2b protein [Arabidopsis thaliana] GI:509423; contains
Pfam profiles PF00134: Cyclin, N-terminal domain,
PF02984: Cyclin, C-terminal domain; identical to cDNA
cyc2a mRNA for cyclin 2a protein GI:728518
Length = 429
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 413 PPLILRCVLIYTMSCTLDTLRAW 345
PP +L +YT CTLD R W
Sbjct: 342 PPSLLAATSVYTAQCTLDGSRKW 364
>At5g02750.1 68418.m00217 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 283
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +2
Query: 185 KTVKVMNLFVDNSVLYECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCP 364
+ V+V N+ N+ EC +CKE ++ R + C + + C+ W + CP
Sbjct: 197 RAVEVFNVAASNAGEVECVICKEEMSEGRDVCEMPCQHF--FHWKCILPWLSKKN--TCP 252
Query: 365 ACR 373
CR
Sbjct: 253 FCR 255
>At5g17960.1 68418.m02106 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 599
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 230 YECNVCKEISTDERFLKPKECCEYAICNAC 319
+ CN CK T R L+ CEY+IC C
Sbjct: 450 FRCNGCKRGLTKNR-LQCSTLCEYSICYEC 478
>At1g51890.1 68414.m05849 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 888
Score = 29.1 bits (62), Expect = 2.8
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Frame = -3
Query: 273 NLSSVDISLQTLHSYKTELSTNKFITLTVLLIVSSFSINNRQFDINSFTYICIEFIFLKQ 94
+L S ++S+ T + Y + K + L IN DI S +YI + F ++
Sbjct: 222 SLLSTELSVDTSNFYNVPQTVAKTAAVP-LNATQPLKINWSLDDITSQSYIYMHFAEIEN 280
Query: 93 ----HAKEFLISFNASRNCFKY 40
+EF I++N N F Y
Sbjct: 281 LEANETREFNITYNGGENWFSY 302
>At1g49230.1 68414.m05519 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 219
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +2
Query: 233 ECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACR 373
EC +C E +K C + + C+ W ++H+ CP CR
Sbjct: 130 ECAICLSEFVAEERVKLLPTCHHGF-HVRCIDKW--LSSHSSCPTCR 173
>At5g44770.1 68418.m05487 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 541
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +2
Query: 227 LYECNVCKEISTDERFLKPKEC--CEYAICNAC 319
L E CK T+ LKP C CEYA+C C
Sbjct: 389 LEETKQCKACGTE--ILKPLSCLVCEYALCIRC 419
>At3g01510.1 68416.m00077 5'-AMP-activated protein kinase beta-1
subunit-related contains similarity to Swiss-Prot:P80387
5'-AMP-activated protein kinase, beta-1 subunit (AMPK
beta-1 chain) (AMPKb) (40 kDa subunit) [Sus scrofa]
Length = 591
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 354 ACVVAVFHMVTQHALHIAYS 295
ACV+A H +T +LH AYS
Sbjct: 399 ACVIAYLHWMTDTSLHAAYS 418
>At1g44050.1 68414.m05082 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 530
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/68 (26%), Positives = 27/68 (39%)
Frame = +2
Query: 149 CLLFIEKLETINKTVKVMNLFVDNSVLYECNVCKEISTDERFLKPKECCEYAICNACCVT 328
C L E L + L+ D L C +CK+ S + + CEY++C C
Sbjct: 334 CALITEPLVYQGHMHPLFLLWDDTESLISCQMCKKKSYYSQLFCLE--CEYSLCLRCVTF 391
Query: 329 MWKTATTH 352
+K H
Sbjct: 392 PYKVRYKH 399
>At1g17145.1 68414.m02090 expressed protein
Length = 335
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +2
Query: 227 LYECNVCKEISTDERFLKPKECCEYAICNACCVTMWK-TATTHAKCPACRTS 379
L EC +C L CC +IC C + M + +CP C+TS
Sbjct: 60 LEECPICFLYYPS---LNRSRCCMKSICTECFLRMKSPNSAQPTQCPFCKTS 108
>At5g41400.1 68418.m05030 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHA1a
[Arabidopsis thaliana] GI:3790554; contains Pfam profile
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 176
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Frame = +2
Query: 236 CNVC-KEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACRTSY 382
C VC E D+ + C I + C+ W CP CRT +
Sbjct: 105 CAVCLHEFENDDEIRRLTNCQH--IFHRSCLDRWMMGYNQMTCPLCRTPF 152
>At5g25180.1 68418.m02985 cytochrome P450 71B14, putative (CYP71B14)
Identical to cytochrome P450 71B14 (SP:P58051)
[Arabidopsis thaliana]; cytochrome P450 71B1, Thlaspi
arvense, SWISSPROT:C7B1_THLAR; similar to cytochrome
P450 CYP83D1p (GIi:2739002) [Glycine max]
Length = 496
Score = 28.3 bits (60), Expect = 5.0
Identities = 22/82 (26%), Positives = 36/82 (43%)
Frame = +2
Query: 20 NVIVFYPYLKQLRDALKLIKNSFACCFKNINSMQMYVNELISNCLLFIEKLETINKTVKV 199
N + F PY K R+ K+ K + S Q E +++ + FI++ ++ KTV +
Sbjct: 110 NDLAFSPYSKYWREVRKMTVIELYTA-KRVKSFQNVRQEEVASFVDFIKQHASLEKTVNM 168
Query: 200 MNLFVDNSVLYECNVCKEISTD 265
V S C V IS +
Sbjct: 169 KQKLVKLSGSVICKVGFGISLE 190
>At2g13900.1 68415.m01542 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 661
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +2
Query: 236 CNVCKEISTDERFLKPKEC--CEYAICNACCVTMWKTATTHAK 358
C +C++ +T FL+ C C+Y IC C ++ H K
Sbjct: 509 CQICQQKAT---FLRKLNCIECDYVICFKCATLPYEAKYKHDK 548
>At5g38070.1 68418.m04587 zinc finger (C3HC4-type RING finger)
family protein contains InterPro Entry IPR001841
Zn-finger, RING; contains PROSITE PS00190: Cytochrome c
family heme-binding site signature
Length = 259
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/56 (25%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Frame = +2
Query: 221 SVLYECNVCKEISTDERFLKPKECC-EYAICNACCVTMWKTATTHAKCPACRTSYK 385
S +C +C + D P C + CV W C CR YK
Sbjct: 49 SKFVQCRICHDEDEDTNMDTPCSCSGTLKFAHHNCVQRWCNEKGDTVCEICRQQYK 104
>At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 227
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 230 YECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHA-KCPACR 373
+ECN+C E++ D C + C C+ W +H+ +CP C+
Sbjct: 26 FECNICFELAQDPIV----TLCGHLFCWP-CLYRWLHHHSHSQECPVCK 69
>At5g37910.1 68418.m04567 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 276
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = -2
Query: 391 CLFIRCPARWTLCVRGGRFPHGNAA-RVAYSVFATFFWL*KSFIRRYFFTNIAFVQNRIV 215
C+F +C ++C G + A ++ +S FW K F FFT + ++I+
Sbjct: 119 CIFSQCSCPSSVCDYTGSYKDLYAHYKLTHST--NIFWNIKRFRCANFFTTSMLISDKIL 176
Query: 214 YEQIH 200
+++H
Sbjct: 177 IKRVH 181
>At3g26250.1 68416.m03275 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 490
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = +2
Query: 236 CNVCKEIS---TDERFLKPKECCEYAICNACCVTMWKTATTHAK 358
C+VC E T E F +E C++A+C C K H K
Sbjct: 310 CSVCAEARGYYTKETFNCIEEECDFALCFKCATLPQKVRYKHDK 353
>At1g47570.1 68414.m05281 zinc finger (C3HC4-type RING finger)
family protein contains Pfam PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 466
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Frame = +2
Query: 233 ECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATT---HAKCPACRTS 379
+C++C I D P C + CN C + + H CP CRT+
Sbjct: 137 KCSICLNIWHDVVTAAP---CLHNFCNGCFSEWMRRSEEKHKHVLCPQCRTT 185
>At1g33480.1 68414.m04144 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 508
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +2
Query: 233 ECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACR 373
+C+VC L+ C++ + C+ +W T+H CP CR
Sbjct: 99 QCSVCLGDYQPNDKLQQIPVCKHTF-HMDCIDLW--LTSHTTCPLCR 142
>At1g18740.1 68414.m02337 expressed protein
Length = 382
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +2
Query: 146 NCLLFIEKLETINKTVKVMNLFVDNSVLYECNVCKEISTDER 271
NC +++++ I K+ ++MN +D S+ + N KE+ +R
Sbjct: 302 NCCGLLKEIDRIEKSSRLMNELID-SIHFPLNDDKEVEVKQR 342
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,096,196
Number of Sequences: 28952
Number of extensions: 285714
Number of successful extensions: 859
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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